data_4HSE # _model_server_result.job_id LHa5h42fqiNNTY5LbW8Ifw _model_server_result.datetime_utc '2024-10-28 02:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4HSE # _exptl.entry_id 4HSE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HSE _cell.length_a 60.99 _cell.length_b 60.99 _cell.length_c 213.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HSE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4HSE _atom_sites.fract_transf_matrix[1][1] 0.016396 _atom_sites.fract_transf_matrix[1][2] 0.009466 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAI A 1 601 1 GAI GAI . C 3 ADP A 1 602 1 ADP ADP . D 4 CL A 1 603 1 CL CL . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 10 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . E 5 HOH A 12 712 12 HOH HOH . E 5 HOH A 13 713 13 HOH HOH . E 5 HOH A 14 714 14 HOH HOH . E 5 HOH A 15 715 15 HOH HOH . E 5 HOH A 16 716 16 HOH HOH . E 5 HOH A 17 717 17 HOH HOH . E 5 HOH A 18 718 18 HOH HOH . E 5 HOH A 19 719 19 HOH HOH . E 5 HOH A 20 720 20 HOH HOH . E 5 HOH A 21 721 21 HOH HOH . E 5 HOH A 22 722 22 HOH HOH . E 5 HOH A 23 723 23 HOH HOH . E 5 HOH A 24 724 24 HOH HOH . E 5 HOH A 25 725 25 HOH HOH . E 5 HOH A 26 726 26 HOH HOH . E 5 HOH A 27 727 27 HOH HOH . E 5 HOH A 28 728 28 HOH HOH . E 5 HOH A 29 729 29 HOH HOH . E 5 HOH A 30 730 30 HOH HOH . E 5 HOH A 31 731 31 HOH HOH . E 5 HOH A 32 732 32 HOH HOH . E 5 HOH A 33 733 33 HOH HOH . E 5 HOH A 34 734 34 HOH HOH . E 5 HOH A 35 735 35 HOH HOH . E 5 HOH A 36 736 36 HOH HOH . E 5 HOH A 37 737 37 HOH HOH . E 5 HOH A 38 738 38 HOH HOH . E 5 HOH A 39 739 39 HOH HOH . E 5 HOH A 40 740 40 HOH HOH . E 5 HOH A 41 741 41 HOH HOH . E 5 HOH A 42 742 42 HOH HOH . E 5 HOH A 43 743 43 HOH HOH . E 5 HOH A 44 744 44 HOH HOH . E 5 HOH A 45 745 45 HOH HOH . E 5 HOH A 46 746 46 HOH HOH . E 5 HOH A 47 747 47 HOH HOH . E 5 HOH A 48 748 48 HOH HOH . E 5 HOH A 49 749 49 HOH HOH . E 5 HOH A 50 750 50 HOH HOH . E 5 HOH A 51 751 51 HOH HOH . E 5 HOH A 52 752 52 HOH HOH . E 5 HOH A 53 753 53 HOH HOH . E 5 HOH A 54 754 54 HOH HOH . E 5 HOH A 55 755 55 HOH HOH . E 5 HOH A 56 756 56 HOH HOH . E 5 HOH A 57 757 57 HOH HOH . E 5 HOH A 58 758 58 HOH HOH . E 5 HOH A 59 759 59 HOH HOH . E 5 HOH A 60 760 60 HOH HOH . E 5 HOH A 61 761 61 HOH HOH . E 5 HOH A 62 762 62 HOH HOH . E 5 HOH A 63 763 63 HOH HOH . E 5 HOH A 64 764 64 HOH HOH . E 5 HOH A 65 765 65 HOH HOH . E 5 HOH A 66 766 66 HOH HOH . E 5 HOH A 67 767 67 HOH HOH . E 5 HOH A 68 768 68 HOH HOH . E 5 HOH A 69 769 69 HOH HOH . E 5 HOH A 70 770 70 HOH HOH . E 5 HOH A 71 771 71 HOH HOH . E 5 HOH A 72 772 72 HOH HOH . E 5 HOH A 73 773 73 HOH HOH . E 5 HOH A 74 774 74 HOH HOH . E 5 HOH A 75 775 75 HOH HOH . E 5 HOH A 76 776 76 HOH HOH . E 5 HOH A 77 777 77 HOH HOH . E 5 HOH A 78 778 78 HOH HOH . E 5 HOH A 79 779 79 HOH HOH . E 5 HOH A 80 780 80 HOH HOH . E 5 HOH A 81 781 81 HOH HOH . E 5 HOH A 82 782 82 HOH HOH . E 5 HOH A 83 783 83 HOH HOH . E 5 HOH A 84 784 84 HOH HOH . E 5 HOH A 85 785 85 HOH HOH . E 5 HOH A 86 786 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 2.176 10.421 -14.994 1 27.9 ? PB ADP 602 A 1 HETATM 2 O O1B ADP . . . C 3 0.955 9.883 -15.715 1 29.95 ? O1B ADP 602 A 1 HETATM 3 O O2B ADP . . . C 3 2.058 11.864 -14.639 1 27.98 ? O2B ADP 602 A 1 HETATM 4 O O3B ADP . . . C 3 2.648 9.478 -13.919 1 29.09 ? O3B ADP 602 A 1 HETATM 5 P PA ADP . . . C 3 4.361 11.501 -16.502 1 28.21 ? PA ADP 602 A 1 HETATM 6 O O1A ADP . . . C 3 3.667 12.706 -17.075 1 27.65 ? O1A ADP 602 A 1 HETATM 7 O O2A ADP . . . C 3 5.262 11.685 -15.318 1 30.84 ? O2A ADP 602 A 1 HETATM 8 O O3A ADP . . . C 3 3.32 10.338 -16.131 1 28.16 ? O3A ADP 602 A 1 HETATM 9 O O5' ADP . . . C 3 5.14 10.753 -17.703 1 27.99 ? O5' ADP 602 A 1 HETATM 10 C C5' ADP . . . C 3 6.061 9.682 -17.466 1 28.1 ? C5' ADP 602 A 1 HETATM 11 C C4' ADP . . . C 3 7.407 9.996 -18.124 1 28.46 ? C4' ADP 602 A 1 HETATM 12 O O4' ADP . . . C 3 7.254 9.91 -19.541 1 27.4 ? O4' ADP 602 A 1 HETATM 13 C C3' ADP . . . C 3 7.871 11.426 -17.835 1 28.93 ? C3' ADP 602 A 1 HETATM 14 O O3' ADP . . . C 3 9.3 11.484 -17.89 1 31.33 ? O3' ADP 602 A 1 HETATM 15 C C2' ADP . . . C 3 7.337 12.235 -18.994 1 27.89 ? C2' ADP 602 A 1 HETATM 16 O O2' ADP . . . C 3 8.134 13.403 -19.251 1 28.26 ? O2' ADP 602 A 1 HETATM 17 C C1' ADP . . . C 3 7.374 11.223 -20.12 1 27.51 ? C1' ADP 602 A 1 HETATM 18 N N9 ADP . . . C 3 6.276 11.417 -21.089 1 28.57 ? N9 ADP 602 A 1 HETATM 19 C C8 ADP . . . C 3 5.02 10.929 -20.985 1 27.81 ? C8 ADP 602 A 1 HETATM 20 N N7 ADP . . . C 3 4.285 11.291 -22.058 1 28.25 ? N7 ADP 602 A 1 HETATM 21 C C5 ADP . . . C 3 5.087 12.019 -22.869 1 28.47 ? C5 ADP 602 A 1 HETATM 22 C C6 ADP . . . C 3 4.951 12.709 -24.165 1 28.71 ? C6 ADP 602 A 1 HETATM 23 N N6 ADP . . . C 3 3.77 12.685 -24.828 1 29.11 ? N6 ADP 602 A 1 HETATM 24 N N1 ADP . . . C 3 6.04 13.365 -24.655 1 31.05 ? N1 ADP 602 A 1 HETATM 25 C C2 ADP . . . C 3 7.224 13.405 -24.005 1 29.58 ? C2 ADP 602 A 1 HETATM 26 N N3 ADP . . . C 3 7.412 12.785 -22.822 1 28.51 ? N3 ADP 602 A 1 HETATM 27 C C4 ADP . . . C 3 6.403 12.098 -22.226 1 28.46 ? C4 ADP 602 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #