data_4HSI # _model_server_result.job_id Xmhr2So1koLMtWYfH9BcnA _model_server_result.datetime_utc '2025-07-08 23:29:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 4HSI # _exptl.entry_id 4HSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HSI _cell.length_a 117.295 _cell.length_b 117.295 _cell.length_c 321.872 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,H,I,S 1 1,2,3 B,J,K,L,T 2 1,4,5 C,F,M,N,O,U 3 1,2,3 D,P,Q,R,V 4 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.6475 -101.58045 0 5 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 117.295 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 P N N ? 3 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 1398 NAG 2 n E NAG 2 E 2 NAG A 1399 NAG 2 n F NAG 1 F 1 NAG C 801 NAG 2 n F NAG 2 F 2 NAG C 802 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 116 1_555 A SG CYS 546 A CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 106 A CYS 133 1_555 A SG CYS 502 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 180 A CYS 207 1_555 A SG CYS 244 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 337 A CYS 364 1_555 A SG CYS 385 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf5 A SG CYS 569 A CYS 596 1_555 A SG CYS 606 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 89 B CYS 116 1_555 B SG CYS 546 B CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 106 B CYS 133 1_555 B SG CYS 502 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 180 B CYS 207 1_555 B SG CYS 244 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf9 B SG CYS 337 B CYS 364 1_555 B SG CYS 385 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf10 B SG CYS 569 B CYS 596 1_555 B SG CYS 606 B CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 C SG CYS 89 C CYS 116 1_555 C SG CYS 546 C CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 C SG CYS 106 C CYS 133 1_555 C SG CYS 502 C CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 C SG CYS 180 C CYS 207 1_555 C SG CYS 244 C CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 C SG CYS 337 C CYS 364 1_555 C SG CYS 385 C CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf15 C SG CYS 569 C CYS 596 1_555 C SG CYS 606 C CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 D SG CYS 89 D CYS 116 1_555 D SG CYS 546 D CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 D SG CYS 106 D CYS 133 1_555 D SG CYS 502 D CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf18 D SG CYS 180 D CYS 207 1_555 D SG CYS 244 D CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf19 D SG CYS 337 D CYS 364 1_555 D SG CYS 385 D CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf20 D SG CYS 569 D CYS 596 1_555 D SG CYS 606 D CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 371 A ASN 398 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 403 A ASN 430 1_555 G C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 371 B ASN 398 1_555 J C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 647 B ASN 674 1_555 K C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 C ND2 ASN 371 C ASN 398 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 C ND2 ASN 403 C ASN 430 1_555 M C1 NAG . C NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 D ND2 ASN 371 D ASN 398 1_555 P C1 NAG . D NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 D ND2 ASN 647 D ASN 674 1_555 Q C1 NAG . D NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 254 n n C1 O1 NAG sing 255 n n C1 O5 NAG sing 256 n n C1 H1 NAG sing 257 n n C2 C3 NAG sing 258 n n C2 N2 NAG sing 259 n n C2 H2 NAG sing 260 n n C3 C4 NAG sing 261 n n C3 O3 NAG sing 262 n n C3 H3 NAG sing 263 n n C4 C5 NAG sing 264 n n C4 O4 NAG sing 265 n n C4 H4 NAG sing 266 n n C5 C6 NAG sing 267 n n C5 O5 NAG sing 268 n n C5 H5 NAG sing 269 n n C6 O6 NAG sing 270 n n C6 H61 NAG sing 271 n n C6 H62 NAG sing 272 n n C7 C8 NAG sing 273 n n C7 N2 NAG sing 274 n n C7 O7 NAG doub 275 n n C8 H81 NAG sing 276 n n C8 H82 NAG sing 277 n n C8 H83 NAG sing 278 n n N2 HN2 NAG sing 279 n n O1 HO1 NAG sing 280 n n O3 HO3 NAG sing 281 n n O4 HO4 NAG sing 282 n n O6 HO6 NAG sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4HSI _atom_sites.fract_transf_matrix[1][1] 0.008526 _atom_sites.fract_transf_matrix[1][2] 0.004922 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 803 1430 NAG NAG . H 4 MRY A 1 804 2000 MRY MRY . I 5 CL A 1 805 3 CL CL . J 3 NAG B 1 801 1398 NAG NAG . K 3 NAG B 1 802 1674 NAG NAG . L 5 CL B 1 803 1 CL CL . M 3 NAG C 1 803 803 NAG NAG . N 4 MRY C 1 804 2000 MRY MRY . O 5 CL C 1 805 4 CL CL . P 3 NAG D 1 801 1398 NAG NAG . Q 3 NAG D 1 802 1674 NAG NAG . R 5 CL D 1 803 2 CL CL . S 6 HOH A 1 901 1 HOH HOH . S 6 HOH A 2 902 2 HOH HOH . S 6 HOH A 3 903 10 HOH HOH . S 6 HOH A 4 904 11 HOH HOH . S 6 HOH A 5 905 12 HOH HOH . S 6 HOH A 6 906 13 HOH HOH . S 6 HOH A 7 907 14 HOH HOH . S 6 HOH A 8 908 15 HOH HOH . T 6 HOH B 1 901 3 HOH HOH . U 6 HOH C 1 901 4 HOH HOH . U 6 HOH C 2 902 5 HOH HOH . U 6 HOH C 3 903 16 HOH HOH . V 6 HOH D 1 901 6 HOH HOH . V 6 HOH D 2 902 7 HOH HOH . V 6 HOH D 3 903 8 HOH HOH . V 6 HOH D 4 904 9 HOH HOH . V 6 HOH D 5 905 17 HOH HOH . V 6 HOH D 6 906 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 3 35.33 -33.597 117.21 1 69.17 ? C1 NAG 801 B 1 HETATM 2 C C2 NAG . . . J 3 35.558 -33.292 118.697 1 69.17 ? C2 NAG 801 B 1 HETATM 3 C C3 NAG . . . J 3 35.284 -34.48 119.629 1 69.17 ? C3 NAG 801 B 1 HETATM 4 C C4 NAG . . . J 3 34.105 -35.338 119.201 1 69.17 ? C4 NAG 801 B 1 HETATM 5 C C5 NAG . . . J 3 34.203 -35.682 117.724 1 69.17 ? C5 NAG 801 B 1 HETATM 6 C C6 NAG . . . J 3 32.99 -36.498 117.288 1 69.17 ? C6 NAG 801 B 1 HETATM 7 C C7 NAG . . . J 3 37.549 -31.762 118.537 1 69.17 ? C7 NAG 801 B 1 HETATM 8 C C8 NAG . . . J 3 39.003 -31.726 118.901 1 69.17 ? C8 NAG 801 B 1 HETATM 9 N N2 NAG . . . J 3 36.943 -32.895 118.916 1 69.17 ? N2 NAG 801 B 1 HETATM 10 O O3 NAG . . . J 3 35.03 -34.024 120.942 1 69.17 ? O3 NAG 801 B 1 HETATM 11 O O4 NAG . . . J 3 34.084 -36.527 119.962 1 69.17 ? O4 NAG 801 B 1 HETATM 12 O O5 NAG . . . J 3 34.27 -34.501 116.949 1 69.17 ? O5 NAG 801 B 1 HETATM 13 O O6 NAG . . . J 3 31.805 -35.79 117.575 1 69.17 ? O6 NAG 801 B 1 HETATM 14 O O7 NAG . . . J 3 37.021 -30.811 117.942 1 69.17 ? O7 NAG 801 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #