data_4HTH # _model_server_result.job_id YIf5wziXdCqRVS9lPM8z6g _model_server_result.datetime_utc '2024-10-11 10:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4HTH # _exptl.entry_id 4HTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.188 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "THYMIDINE-3',5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.24 _cell.angle_gamma 90 _cell.entry_id 4HTH _cell.length_a 31.181 _cell.length_b 60.464 _cell.length_c 38.385 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O11 P2' _chem_comp.formula_weight 402.188 _chem_comp.id THP _chem_comp.mon_nstd_flag . _chem_comp.name "THYMIDINE-3',5'-DIPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P2 O4P THP doub 277 n n P2 O5P THP sing 278 n n P2 O6P THP sing 279 n n P2 O5' THP sing 280 n n O5P HOP5 THP sing 281 n n O6P HOP6 THP sing 282 n n P1 O1P THP doub 283 n n P1 O2P THP sing 284 n n P1 O3P THP sing 285 n n P1 O3' THP sing 286 n n O2P HOP2 THP sing 287 n n O3P HOP3 THP sing 288 n n O5' C5' THP sing 289 n n C5' C4' THP sing 290 n n C5' "H5'1" THP sing 291 n n C5' "H5'2" THP sing 292 n n C4' O4' THP sing 293 n n C4' C3' THP sing 294 n n C4' H4' THP sing 295 n n O4' C1' THP sing 296 n n C3' O3' THP sing 297 n n C3' C2' THP sing 298 n n C3' H3' THP sing 299 n n C2' C1' THP sing 300 n n C2' "H2'1" THP sing 301 n n C2' "H2'2" THP sing 302 n n C1' N1 THP sing 303 n n C1' H1' THP sing 304 n n N1 C2 THP sing 305 n n N1 C6 THP sing 306 n n C2 O2 THP doub 307 n n C2 N3 THP sing 308 n n N3 C4 THP sing 309 n n N3 H3 THP sing 310 n n C4 O4 THP doub 311 n n C4 C5 THP sing 312 n n C5 C5M THP sing 313 n n C5 C6 THP doub 314 n n C5M H51 THP sing 315 n n C5M H52 THP sing 316 n n C5M H53 THP sing 317 n n C6 H6 THP sing 318 n n # _atom_sites.entry_id 4HTH _atom_sites.fract_transf_matrix[1][1] 0.032071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002378 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 THP A 1 201 142 THP THP . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 1 HOH HOH . C 3 HOH A 6 306 2 HOH HOH . C 3 HOH A 7 307 3 HOH HOH . C 3 HOH A 8 308 4 HOH HOH . C 3 HOH A 9 309 5 HOH HOH . C 3 HOH A 10 310 6 HOH HOH . C 3 HOH A 11 311 7 HOH HOH . C 3 HOH A 12 312 8 HOH HOH . C 3 HOH A 13 313 9 HOH HOH . C 3 HOH A 14 314 10 HOH HOH . C 3 HOH A 15 315 11 HOH HOH . C 3 HOH A 16 316 12 HOH HOH . C 3 HOH A 17 317 13 HOH HOH . C 3 HOH A 18 318 14 HOH HOH . C 3 HOH A 19 319 15 HOH HOH . C 3 HOH A 20 320 16 HOH HOH . C 3 HOH A 21 321 17 HOH HOH . C 3 HOH A 22 322 18 HOH HOH . C 3 HOH A 23 323 19 HOH HOH . C 3 HOH A 24 324 20 HOH HOH . C 3 HOH A 25 325 21 HOH HOH . C 3 HOH A 26 326 22 HOH HOH . C 3 HOH A 27 327 23 HOH HOH . C 3 HOH A 28 328 24 HOH HOH . C 3 HOH A 29 329 25 HOH HOH . C 3 HOH A 30 330 26 HOH HOH . C 3 HOH A 31 331 27 HOH HOH . C 3 HOH A 32 332 28 HOH HOH . C 3 HOH A 33 333 29 HOH HOH . C 3 HOH A 34 334 30 HOH HOH . C 3 HOH A 35 335 32 HOH HOH . C 3 HOH A 36 336 33 HOH HOH . C 3 HOH A 37 337 34 HOH HOH . C 3 HOH A 38 338 37 HOH HOH . C 3 HOH A 39 339 38 HOH HOH . C 3 HOH A 40 340 39 HOH HOH . C 3 HOH A 41 341 40 HOH HOH . C 3 HOH A 42 342 41 HOH HOH . C 3 HOH A 43 343 42 HOH HOH . C 3 HOH A 44 344 43 HOH HOH . C 3 HOH A 45 345 44 HOH HOH . C 3 HOH A 46 346 45 HOH HOH . C 3 HOH A 47 347 46 HOH HOH . C 3 HOH A 48 348 47 HOH HOH . C 3 HOH A 49 349 48 HOH HOH . C 3 HOH A 50 350 49 HOH HOH . C 3 HOH A 51 351 50 HOH HOH . C 3 HOH A 52 352 51 HOH HOH . C 3 HOH A 53 353 52 HOH HOH . C 3 HOH A 54 354 53 HOH HOH . C 3 HOH A 55 355 54 HOH HOH . C 3 HOH A 56 356 55 HOH HOH . C 3 HOH A 57 357 56 HOH HOH . C 3 HOH A 58 358 57 HOH HOH . C 3 HOH A 59 359 58 HOH HOH . C 3 HOH A 60 360 59 HOH HOH . C 3 HOH A 61 361 60 HOH HOH . C 3 HOH A 62 362 61 HOH HOH . C 3 HOH A 63 363 62 HOH HOH . C 3 HOH A 64 364 63 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P2 THP . . . B 2 17.883 10.831 4.964 1 22.2 ? P2 THP 201 A 1 HETATM 2 O O4P THP . . . B 2 17.83 9.404 5.256 1 22.49 ? O4P THP 201 A 1 HETATM 3 O O5P THP . . . B 2 16.633 11.583 5.417 1 22.25 ? O5P THP 201 A 1 HETATM 4 O O6P THP . . . B 2 19.104 11.522 5.42 1 25.64 ? O6P THP 201 A 1 HETATM 5 P P1 THP . . . B 2 21.197 14.438 1.153 1 27.8 ? P1 THP 201 A 1 HETATM 6 O O1P THP . . . B 2 22.185 14.943 0.151 1 28.54 ? O1P THP 201 A 1 HETATM 7 O O2P THP . . . B 2 21.876 13.357 1.976 1 31.19 ? O2P THP 201 A 1 HETATM 8 O O3P THP . . . B 2 20.491 15.43 2.01 1 27.48 ? O3P THP 201 A 1 HETATM 9 O O5' THP . . . B 2 17.931 10.907 3.343 1 25.98 ? O5' THP 201 A 1 HETATM 10 C C5' THP . . . B 2 18.011 12.171 2.685 1 25.55 ? C5' THP 201 A 1 HETATM 11 C C4' THP . . . B 2 18.966 12.077 1.504 1 21.93 ? C4' THP 201 A 1 HETATM 12 O O4' THP . . . B 2 18.475 11.001 0.746 1 21.09 ? O4' THP 201 A 1 HETATM 13 C C3' THP . . . B 2 18.863 13.34 0.656 1 23.95 ? C3' THP 201 A 1 HETATM 14 O O3' THP . . . B 2 20.17 13.65 0.16 1 25.63 ? O3' THP 201 A 1 HETATM 15 C C2' THP . . . B 2 18.009 12.893 -0.534 1 21.74 ? C2' THP 201 A 1 HETATM 16 C C1' THP . . . B 2 18.208 11.394 -0.622 1 19.9 ? C1' THP 201 A 1 HETATM 17 N N1 THP . . . B 2 16.914 10.786 -0.957 1 19.34 ? N1 THP 201 A 1 HETATM 18 C C2 THP . . . B 2 16.626 10.576 -2.351 1 21.03 ? C2 THP 201 A 1 HETATM 19 O O2 THP . . . B 2 17.532 10.94 -3.147 1 23.69 ? O2 THP 201 A 1 HETATM 20 N N3 THP . . . B 2 15.443 10.045 -2.746 1 20.01 ? N3 THP 201 A 1 HETATM 21 C C4 THP . . . B 2 14.46 9.812 -1.817 1 22.02 ? C4 THP 201 A 1 HETATM 22 O O4 THP . . . B 2 13.369 9.395 -2.22 1 23.12 ? O4 THP 201 A 1 HETATM 23 C C5 THP . . . B 2 14.74 9.962 -0.384 1 21.85 ? C5 THP 201 A 1 HETATM 24 C C5M THP . . . B 2 13.717 9.616 0.7 1 23.07 ? C5M THP 201 A 1 HETATM 25 C C6 THP . . . B 2 15.993 10.497 -0.014 1 19.49 ? C6 THP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #