data_4HU5 # _model_server_result.job_id NyuH63RvpVa8hRqPxEzSUQ _model_server_result.datetime_utc '2024-10-14 07:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4HU5 # _exptl.entry_id 4HU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.75 _cell.angle_gamma 90 _cell.entry_id 4HU5 _cell.length_a 76.729 _cell.length_b 30.907 _cell.length_c 33.306 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ARG 2 A ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ARG 2 A ARG 1 1_555 A N NLE 3 A NLE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C NLE 3 A NLE 2 1_555 A N LYS 4 A LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C GLU 7 A GLU 6 1_555 A N UU4 8 A UU4 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C UU4 8 A UU4 7 1_555 A N LYS 9 A LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale6 A C GLU 11 A GLU 10 1_555 A N 19W 12 A 19W 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C 19W 12 A 19W 11 1_555 A N LEU 13 A LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C ACE 1 B ACE 0 1_555 B N ARG 2 B ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 B C ARG 2 B ARG 1 1_555 B N NLE 3 B NLE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 B C NLE 3 B NLE 2 1_555 B N LYS 4 B LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 B C GLU 7 B GLU 6 1_555 B N UU4 8 B UU4 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 B C UU4 8 B UU4 7 1_555 B N LYS 9 B LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 B C GLU 11 B GLU 10 1_555 B N 19W 12 B 19W 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale14 B C 19W 12 B 19W 11 1_555 B N LEU 13 B LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 4HU5 _atom_sites.fract_transf_matrix[1][1] 0.013033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001773 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 101 1 GOL GOL . D 3 ACT B 1 101 1 ACT ACT . E 3 ACT B 1 102 1 ACT ACT . F 3 ACT B 1 103 1 ACT ACT . G 4 HOH A 1 201 2 HOH HOH . G 4 HOH A 2 202 3 HOH HOH . G 4 HOH A 3 203 4 HOH HOH . G 4 HOH A 4 204 5 HOH HOH . G 4 HOH A 5 205 7 HOH HOH . G 4 HOH A 6 206 8 HOH HOH . G 4 HOH A 7 207 9 HOH HOH . G 4 HOH A 8 208 10 HOH HOH . G 4 HOH A 9 209 11 HOH HOH . G 4 HOH A 10 210 13 HOH HOH . G 4 HOH A 11 211 14 HOH HOH . G 4 HOH A 12 212 18 HOH HOH . G 4 HOH A 13 213 19 HOH HOH . G 4 HOH A 14 214 24 HOH HOH . G 4 HOH A 15 215 30 HOH HOH . G 4 HOH A 16 216 31 HOH HOH . G 4 HOH A 17 217 32 HOH HOH . G 4 HOH A 18 218 35 HOH HOH . G 4 HOH A 19 219 37 HOH HOH . G 4 HOH A 20 220 38 HOH HOH . G 4 HOH A 21 221 39 HOH HOH . H 4 HOH B 1 201 1 HOH HOH . H 4 HOH B 2 202 12 HOH HOH . H 4 HOH B 3 203 15 HOH HOH . H 4 HOH B 4 204 16 HOH HOH . H 4 HOH B 5 205 17 HOH HOH . H 4 HOH B 6 206 22 HOH HOH . H 4 HOH B 7 207 23 HOH HOH . H 4 HOH B 8 208 26 HOH HOH . H 4 HOH B 9 209 27 HOH HOH . H 4 HOH B 10 210 29 HOH HOH . H 4 HOH B 11 211 33 HOH HOH . H 4 HOH B 12 212 34 HOH HOH . H 4 HOH B 13 213 36 HOH HOH . H 4 HOH B 14 214 40 HOH HOH . H 4 HOH B 15 215 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 8.079 -3.329 -2.908 1 50.76 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . C 2 8.403 -2.707 -4.176 1 62.59 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . C 2 7.762 -4.808 -3.126 1 52.51 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . C 2 6.336 -5.035 -3.076 1 52.39 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . C 2 8.487 -5.674 -2.095 1 50.14 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . C 2 8.261 -7.049 -2.423 1 45.8 ? O3 GOL 101 A 1 HETATM 7 H H11 GOL . . . C 2 8.922 -3.22 -2.221 1 53.59 ? H11 GOL 101 A 1 HETATM 8 H H12 GOL . . . C 2 7.215 -2.829 -2.464 1 53.68 ? H12 GOL 101 A 1 HETATM 9 H H2 GOL . . . C 2 8.133 -5.092 -4.121 1 51.85 ? H2 GOL 101 A 1 HETATM 10 H H31 GOL . . . C 2 9.56 -5.459 -2.11 1 49.67 ? H31 GOL 101 A 1 HETATM 11 H H32 GOL . . . C 2 8.106 -5.461 -1.092 1 49.62 ? H32 GOL 101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #