data_4HV4 # _model_server_result.job_id 3hmTF4lLiDWRuKAkbotrCA _model_server_result.datetime_utc '2024-12-21 14:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4HV4 # _exptl.entry_id 4HV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HV4 _cell.length_a 66.534 _cell.length_b 78.021 _cell.length_c 183.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 429 A CYS 426 1_555 D S2 BME . A BME 502 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.139 ? covale ? covale2 B SG CYS 429 B CYS 426 1_555 F S2 BME . B BME 502 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.91 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 109 n n C1 O1 BME sing 110 n n C1 H11 BME sing 111 n n C1 H12 BME sing 112 n n C2 S2 BME sing 113 n n C2 H21 BME sing 114 n n C2 H22 BME sing 115 n n O1 HO1 BME sing 116 n n S2 HS2 BME sing 117 n n # _atom_sites.entry_id 4HV4 _atom_sites.fract_transf_matrix[1][1] 0.01503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 501 1 AMP AMP . D 3 BME A 1 502 3 BME BME . E 2 AMP B 1 501 2 AMP AMP . F 3 BME B 1 502 4 BME BME . G 4 HOH A 1 601 5 HOH HOH . G 4 HOH A 2 602 7 HOH HOH . G 4 HOH A 3 603 10 HOH HOH . G 4 HOH A 4 604 13 HOH HOH . G 4 HOH A 5 605 15 HOH HOH . G 4 HOH A 6 606 18 HOH HOH . G 4 HOH A 7 607 19 HOH HOH . G 4 HOH A 8 608 23 HOH HOH . G 4 HOH A 9 609 25 HOH HOH . G 4 HOH A 10 610 26 HOH HOH . G 4 HOH A 11 611 28 HOH HOH . G 4 HOH A 12 612 29 HOH HOH . G 4 HOH A 13 613 30 HOH HOH . G 4 HOH A 14 614 31 HOH HOH . G 4 HOH A 15 615 41 HOH HOH . G 4 HOH A 16 616 43 HOH HOH . G 4 HOH A 17 617 46 HOH HOH . G 4 HOH A 18 618 47 HOH HOH . G 4 HOH A 19 619 51 HOH HOH . G 4 HOH A 20 620 52 HOH HOH . G 4 HOH A 21 621 53 HOH HOH . G 4 HOH A 22 622 55 HOH HOH . G 4 HOH A 23 623 60 HOH HOH . G 4 HOH A 24 624 61 HOH HOH . G 4 HOH A 25 625 65 HOH HOH . G 4 HOH A 26 626 67 HOH HOH . G 4 HOH A 27 627 68 HOH HOH . G 4 HOH A 28 628 69 HOH HOH . G 4 HOH A 29 629 70 HOH HOH . G 4 HOH A 30 630 76 HOH HOH . G 4 HOH A 31 631 78 HOH HOH . G 4 HOH A 32 632 80 HOH HOH . G 4 HOH A 33 633 82 HOH HOH . G 4 HOH A 34 634 83 HOH HOH . G 4 HOH A 35 635 84 HOH HOH . G 4 HOH A 36 636 85 HOH HOH . G 4 HOH A 37 637 86 HOH HOH . G 4 HOH A 38 638 87 HOH HOH . G 4 HOH A 39 639 88 HOH HOH . G 4 HOH A 40 640 89 HOH HOH . G 4 HOH A 41 641 91 HOH HOH . G 4 HOH A 42 642 94 HOH HOH . G 4 HOH A 43 643 97 HOH HOH . G 4 HOH A 44 644 98 HOH HOH . G 4 HOH A 45 645 101 HOH HOH . G 4 HOH A 46 646 102 HOH HOH . G 4 HOH A 47 647 107 HOH HOH . G 4 HOH A 48 648 110 HOH HOH . G 4 HOH A 49 649 111 HOH HOH . G 4 HOH A 50 650 113 HOH HOH . G 4 HOH A 51 651 115 HOH HOH . G 4 HOH A 52 652 116 HOH HOH . G 4 HOH A 53 653 120 HOH HOH . G 4 HOH A 54 654 121 HOH HOH . G 4 HOH A 55 655 126 HOH HOH . G 4 HOH A 56 656 130 HOH HOH . G 4 HOH A 57 657 131 HOH HOH . G 4 HOH A 58 658 133 HOH HOH . G 4 HOH A 59 659 139 HOH HOH . G 4 HOH A 60 660 141 HOH HOH . G 4 HOH A 61 661 143 HOH HOH . G 4 HOH A 62 662 144 HOH HOH . G 4 HOH A 63 663 145 HOH HOH . G 4 HOH A 64 664 147 HOH HOH . G 4 HOH A 65 665 151 HOH HOH . G 4 HOH A 66 666 152 HOH HOH . G 4 HOH A 67 667 154 HOH HOH . G 4 HOH A 68 668 155 HOH HOH . G 4 HOH A 69 669 157 HOH HOH . G 4 HOH A 70 670 162 HOH HOH . G 4 HOH A 71 671 163 HOH HOH . G 4 HOH A 72 672 170 HOH HOH . G 4 HOH A 73 673 171 HOH HOH . G 4 HOH A 74 674 172 HOH HOH . G 4 HOH A 75 675 173 HOH HOH . G 4 HOH A 76 676 174 HOH HOH . G 4 HOH A 77 677 187 HOH HOH . G 4 HOH A 78 678 188 HOH HOH . G 4 HOH A 79 679 189 HOH HOH . G 4 HOH A 80 680 193 HOH HOH . G 4 HOH A 81 681 194 HOH HOH . G 4 HOH A 82 682 195 HOH HOH . G 4 HOH A 83 683 196 HOH HOH . G 4 HOH A 84 684 197 HOH HOH . G 4 HOH A 85 685 198 HOH HOH . G 4 HOH A 86 686 199 HOH HOH . G 4 HOH A 87 687 200 HOH HOH . G 4 HOH A 88 688 201 HOH HOH . G 4 HOH A 89 689 202 HOH HOH . G 4 HOH A 90 690 203 HOH HOH . G 4 HOH A 91 691 204 HOH HOH . G 4 HOH A 92 692 206 HOH HOH . G 4 HOH A 93 693 207 HOH HOH . G 4 HOH A 94 694 208 HOH HOH . G 4 HOH A 95 695 209 HOH HOH . G 4 HOH A 96 696 210 HOH HOH . G 4 HOH A 97 697 211 HOH HOH . G 4 HOH A 98 698 212 HOH HOH . G 4 HOH A 99 699 216 HOH HOH . G 4 HOH A 100 700 217 HOH HOH . G 4 HOH A 101 701 218 HOH HOH . G 4 HOH A 102 702 222 HOH HOH . G 4 HOH A 103 703 223 HOH HOH . G 4 HOH A 104 704 225 HOH HOH . G 4 HOH A 105 705 230 HOH HOH . G 4 HOH A 106 706 234 HOH HOH . G 4 HOH A 107 707 235 HOH HOH . G 4 HOH A 108 708 236 HOH HOH . G 4 HOH A 109 709 237 HOH HOH . G 4 HOH A 110 710 247 HOH HOH . G 4 HOH A 111 711 254 HOH HOH . G 4 HOH A 112 712 255 HOH HOH . G 4 HOH A 113 713 256 HOH HOH . G 4 HOH A 114 714 257 HOH HOH . G 4 HOH A 115 715 258 HOH HOH . G 4 HOH A 116 716 266 HOH HOH . G 4 HOH A 117 717 270 HOH HOH . G 4 HOH A 118 718 273 HOH HOH . G 4 HOH A 119 719 276 HOH HOH . G 4 HOH A 120 720 277 HOH HOH . G 4 HOH A 121 721 282 HOH HOH . G 4 HOH A 122 722 283 HOH HOH . G 4 HOH A 123 723 284 HOH HOH . H 4 HOH B 1 601 6 HOH HOH . H 4 HOH B 2 602 8 HOH HOH . H 4 HOH B 3 603 9 HOH HOH . H 4 HOH B 4 604 11 HOH HOH . H 4 HOH B 5 605 12 HOH HOH . H 4 HOH B 6 606 14 HOH HOH . H 4 HOH B 7 607 16 HOH HOH . H 4 HOH B 8 608 17 HOH HOH . H 4 HOH B 9 609 20 HOH HOH . H 4 HOH B 10 610 21 HOH HOH . H 4 HOH B 11 611 22 HOH HOH . H 4 HOH B 12 612 24 HOH HOH . H 4 HOH B 13 613 27 HOH HOH . H 4 HOH B 14 614 32 HOH HOH . H 4 HOH B 15 615 33 HOH HOH . H 4 HOH B 16 616 34 HOH HOH . H 4 HOH B 17 617 35 HOH HOH . H 4 HOH B 18 618 36 HOH HOH . H 4 HOH B 19 619 37 HOH HOH . H 4 HOH B 20 620 38 HOH HOH . H 4 HOH B 21 621 39 HOH HOH . H 4 HOH B 22 622 40 HOH HOH . H 4 HOH B 23 623 42 HOH HOH . H 4 HOH B 24 624 44 HOH HOH . H 4 HOH B 25 625 45 HOH HOH . H 4 HOH B 26 626 48 HOH HOH . H 4 HOH B 27 627 49 HOH HOH . H 4 HOH B 28 628 50 HOH HOH . H 4 HOH B 29 629 54 HOH HOH . H 4 HOH B 30 630 56 HOH HOH . H 4 HOH B 31 631 57 HOH HOH . H 4 HOH B 32 632 58 HOH HOH . H 4 HOH B 33 633 59 HOH HOH . H 4 HOH B 34 634 62 HOH HOH . H 4 HOH B 35 635 63 HOH HOH . H 4 HOH B 36 636 64 HOH HOH . H 4 HOH B 37 637 66 HOH HOH . H 4 HOH B 38 638 71 HOH HOH . H 4 HOH B 39 639 72 HOH HOH . H 4 HOH B 40 640 73 HOH HOH . H 4 HOH B 41 641 74 HOH HOH . H 4 HOH B 42 642 75 HOH HOH . H 4 HOH B 43 643 77 HOH HOH . H 4 HOH B 44 644 79 HOH HOH . H 4 HOH B 45 645 81 HOH HOH . H 4 HOH B 46 646 90 HOH HOH . H 4 HOH B 47 647 92 HOH HOH . H 4 HOH B 48 648 93 HOH HOH . H 4 HOH B 49 649 95 HOH HOH . H 4 HOH B 50 650 96 HOH HOH . H 4 HOH B 51 651 99 HOH HOH . H 4 HOH B 52 652 100 HOH HOH . H 4 HOH B 53 653 103 HOH HOH . H 4 HOH B 54 654 104 HOH HOH . H 4 HOH B 55 655 105 HOH HOH . H 4 HOH B 56 656 106 HOH HOH . H 4 HOH B 57 657 108 HOH HOH . H 4 HOH B 58 658 109 HOH HOH . H 4 HOH B 59 659 112 HOH HOH . H 4 HOH B 60 660 114 HOH HOH . H 4 HOH B 61 661 117 HOH HOH . H 4 HOH B 62 662 118 HOH HOH . H 4 HOH B 63 663 119 HOH HOH . H 4 HOH B 64 664 122 HOH HOH . H 4 HOH B 65 665 123 HOH HOH . H 4 HOH B 66 666 124 HOH HOH . H 4 HOH B 67 667 125 HOH HOH . H 4 HOH B 68 668 127 HOH HOH . H 4 HOH B 69 669 128 HOH HOH . H 4 HOH B 70 670 129 HOH HOH . H 4 HOH B 71 671 132 HOH HOH . H 4 HOH B 72 672 134 HOH HOH . H 4 HOH B 73 673 135 HOH HOH . H 4 HOH B 74 674 136 HOH HOH . H 4 HOH B 75 675 137 HOH HOH . H 4 HOH B 76 676 138 HOH HOH . H 4 HOH B 77 677 140 HOH HOH . H 4 HOH B 78 678 142 HOH HOH . H 4 HOH B 79 679 146 HOH HOH . H 4 HOH B 80 680 148 HOH HOH . H 4 HOH B 81 681 149 HOH HOH . H 4 HOH B 82 682 150 HOH HOH . H 4 HOH B 83 683 153 HOH HOH . H 4 HOH B 84 684 156 HOH HOH . H 4 HOH B 85 685 158 HOH HOH . H 4 HOH B 86 686 159 HOH HOH . H 4 HOH B 87 687 160 HOH HOH . H 4 HOH B 88 688 161 HOH HOH . H 4 HOH B 89 689 164 HOH HOH . H 4 HOH B 90 690 165 HOH HOH . H 4 HOH B 91 691 166 HOH HOH . H 4 HOH B 92 692 167 HOH HOH . H 4 HOH B 93 693 168 HOH HOH . H 4 HOH B 94 694 169 HOH HOH . H 4 HOH B 95 695 175 HOH HOH . H 4 HOH B 96 696 176 HOH HOH . H 4 HOH B 97 697 177 HOH HOH . H 4 HOH B 98 698 178 HOH HOH . H 4 HOH B 99 699 179 HOH HOH . H 4 HOH B 100 700 180 HOH HOH . H 4 HOH B 101 701 181 HOH HOH . H 4 HOH B 102 702 182 HOH HOH . H 4 HOH B 103 703 183 HOH HOH . H 4 HOH B 104 704 184 HOH HOH . H 4 HOH B 105 705 185 HOH HOH . H 4 HOH B 106 706 186 HOH HOH . H 4 HOH B 107 707 190 HOH HOH . H 4 HOH B 108 708 191 HOH HOH . H 4 HOH B 109 709 192 HOH HOH . H 4 HOH B 110 710 205 HOH HOH . H 4 HOH B 111 711 213 HOH HOH . H 4 HOH B 112 712 214 HOH HOH . H 4 HOH B 113 713 215 HOH HOH . H 4 HOH B 114 714 219 HOH HOH . H 4 HOH B 115 715 220 HOH HOH . H 4 HOH B 116 716 221 HOH HOH . H 4 HOH B 117 717 224 HOH HOH . H 4 HOH B 118 718 226 HOH HOH . H 4 HOH B 119 719 227 HOH HOH . H 4 HOH B 120 720 228 HOH HOH . H 4 HOH B 121 721 229 HOH HOH . H 4 HOH B 122 722 231 HOH HOH . H 4 HOH B 123 723 232 HOH HOH . H 4 HOH B 124 724 233 HOH HOH . H 4 HOH B 125 725 238 HOH HOH . H 4 HOH B 126 726 239 HOH HOH . H 4 HOH B 127 727 240 HOH HOH . H 4 HOH B 128 728 241 HOH HOH . H 4 HOH B 129 729 242 HOH HOH . H 4 HOH B 130 730 243 HOH HOH . H 4 HOH B 131 731 244 HOH HOH . H 4 HOH B 132 732 245 HOH HOH . H 4 HOH B 133 733 246 HOH HOH . H 4 HOH B 134 734 248 HOH HOH . H 4 HOH B 135 735 249 HOH HOH . H 4 HOH B 136 736 250 HOH HOH . H 4 HOH B 137 737 251 HOH HOH . H 4 HOH B 138 738 252 HOH HOH . H 4 HOH B 139 739 253 HOH HOH . H 4 HOH B 140 740 259 HOH HOH . H 4 HOH B 141 741 260 HOH HOH . H 4 HOH B 142 742 261 HOH HOH . H 4 HOH B 143 743 262 HOH HOH . H 4 HOH B 144 744 263 HOH HOH . H 4 HOH B 145 745 264 HOH HOH . H 4 HOH B 146 746 265 HOH HOH . H 4 HOH B 147 747 267 HOH HOH . H 4 HOH B 148 748 268 HOH HOH . H 4 HOH B 149 749 269 HOH HOH . H 4 HOH B 150 750 271 HOH HOH . H 4 HOH B 151 751 272 HOH HOH . H 4 HOH B 152 752 274 HOH HOH . H 4 HOH B 153 753 275 HOH HOH . H 4 HOH B 154 754 278 HOH HOH . H 4 HOH B 155 755 279 HOH HOH . H 4 HOH B 156 756 280 HOH HOH . H 4 HOH B 157 757 281 HOH HOH . H 4 HOH B 158 758 285 HOH HOH . H 4 HOH B 159 759 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . A . D 3 11.03 60.862 -2.715 0.5 39.34 ? C1 BME 502 A 1 HETATM 2 C C2 BME . A . D 3 12.39 61.55 -2.707 0.5 38.95 ? C2 BME 502 A 1 HETATM 3 O O1 BME . A . D 3 10.38 61.159 -3.952 0.5 40 ? O1 BME 502 A 1 HETATM 4 S S2 BME . A . D 3 13.509 60.607 -3.765 0.5 35.11 ? S2 BME 502 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 1187 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 4 #