data_4HV7 # _model_server_result.job_id aLgjLDcI8XHLi9SsZdCnGA _model_server_result.datetime_utc '2025-07-03 20:42:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4HV7 # _exptl.entry_id 4HV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HV7 _cell.length_a 68.196 _cell.length_b 68.196 _cell.length_c 140.844 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -70.422 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 272 n n C1 O1B MLA doub 273 n n C1 C2 MLA sing 274 n n O1A H1A MLA sing 275 n n C2 C3 MLA sing 276 n n C2 HC21 MLA sing 277 n n C2 HC22 MLA sing 278 n n C3 O3A MLA doub 279 n n C3 O3B MLA sing 280 n n O3B H3B MLA sing 281 n n # _atom_sites.entry_id 4HV7 _atom_sites.fract_transf_matrix[1][1] 0.014664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 19J X 1 301 1 19J R46 . C 3 SO4 X 1 302 1 SO4 SO4 . D 4 MLA X 1 303 1 MLA MAL . E 5 HOH X 1 401 1 HOH HOH . E 5 HOH X 2 402 2 HOH HOH . E 5 HOH X 3 403 3 HOH HOH . E 5 HOH X 4 404 4 HOH HOH . E 5 HOH X 5 405 5 HOH HOH . E 5 HOH X 6 406 6 HOH HOH . E 5 HOH X 7 407 7 HOH HOH . E 5 HOH X 8 408 8 HOH HOH . E 5 HOH X 9 409 9 HOH HOH . E 5 HOH X 10 410 10 HOH HOH . E 5 HOH X 11 411 11 HOH HOH . E 5 HOH X 12 412 12 HOH HOH . E 5 HOH X 13 413 13 HOH HOH . E 5 HOH X 14 414 14 HOH HOH . E 5 HOH X 15 415 15 HOH HOH . E 5 HOH X 16 416 16 HOH HOH . E 5 HOH X 17 417 17 HOH HOH . E 5 HOH X 18 418 18 HOH HOH . E 5 HOH X 19 419 19 HOH HOH . E 5 HOH X 20 420 20 HOH HOH . E 5 HOH X 21 421 21 HOH HOH . E 5 HOH X 22 422 22 HOH HOH . E 5 HOH X 23 423 23 HOH HOH . E 5 HOH X 24 424 24 HOH HOH . E 5 HOH X 25 425 25 HOH HOH . E 5 HOH X 26 426 26 HOH HOH . E 5 HOH X 27 427 27 HOH HOH . E 5 HOH X 28 428 28 HOH HOH . E 5 HOH X 29 429 29 HOH HOH . E 5 HOH X 30 430 30 HOH HOH . E 5 HOH X 31 431 31 HOH HOH . E 5 HOH X 32 432 32 HOH HOH . E 5 HOH X 33 433 33 HOH HOH . E 5 HOH X 34 434 34 HOH HOH . E 5 HOH X 35 435 35 HOH HOH . E 5 HOH X 36 436 36 HOH HOH . E 5 HOH X 37 437 37 HOH HOH . E 5 HOH X 38 438 38 HOH HOH . E 5 HOH X 39 439 39 HOH HOH . E 5 HOH X 40 440 40 HOH HOH . E 5 HOH X 41 441 41 HOH HOH . E 5 HOH X 42 442 42 HOH HOH . E 5 HOH X 43 443 43 HOH HOH . E 5 HOH X 44 444 44 HOH HOH . E 5 HOH X 45 445 45 HOH HOH . E 5 HOH X 46 446 46 HOH HOH . E 5 HOH X 47 447 47 HOH HOH . E 5 HOH X 48 448 48 HOH HOH . E 5 HOH X 49 449 49 HOH HOH . E 5 HOH X 50 450 50 HOH HOH . E 5 HOH X 51 451 51 HOH HOH . E 5 HOH X 52 452 52 HOH HOH . E 5 HOH X 53 453 53 HOH HOH . E 5 HOH X 54 454 54 HOH HOH . E 5 HOH X 55 455 55 HOH HOH . E 5 HOH X 56 456 56 HOH HOH . E 5 HOH X 57 457 57 HOH HOH . E 5 HOH X 58 458 58 HOH HOH . E 5 HOH X 59 459 59 HOH HOH . E 5 HOH X 60 460 60 HOH HOH . E 5 HOH X 61 461 61 HOH HOH . E 5 HOH X 62 462 62 HOH HOH . E 5 HOH X 63 463 63 HOH HOH . E 5 HOH X 64 464 64 HOH HOH . E 5 HOH X 65 465 65 HOH HOH . E 5 HOH X 66 466 66 HOH HOH . E 5 HOH X 67 467 67 HOH HOH . E 5 HOH X 68 468 68 HOH HOH . E 5 HOH X 69 469 69 HOH HOH . E 5 HOH X 70 470 70 HOH HOH . E 5 HOH X 71 471 71 HOH HOH . E 5 HOH X 72 472 72 HOH HOH . E 5 HOH X 73 473 73 HOH HOH . E 5 HOH X 74 474 74 HOH HOH . E 5 HOH X 75 475 75 HOH HOH . E 5 HOH X 76 476 76 HOH HOH . E 5 HOH X 77 477 77 HOH HOH . E 5 HOH X 78 478 78 HOH HOH . E 5 HOH X 79 479 79 HOH HOH . E 5 HOH X 80 480 80 HOH HOH . E 5 HOH X 81 481 81 HOH HOH . E 5 HOH X 82 482 82 HOH HOH . E 5 HOH X 83 483 83 HOH HOH . E 5 HOH X 84 484 84 HOH HOH . E 5 HOH X 85 485 85 HOH HOH . E 5 HOH X 86 486 86 HOH HOH . E 5 HOH X 87 487 87 HOH HOH . E 5 HOH X 88 488 88 HOH HOH . E 5 HOH X 89 489 89 HOH HOH . E 5 HOH X 90 490 90 HOH HOH . E 5 HOH X 91 491 91 HOH HOH . E 5 HOH X 92 492 92 HOH HOH . E 5 HOH X 93 493 93 HOH HOH . E 5 HOH X 94 494 94 HOH HOH . E 5 HOH X 95 495 95 HOH HOH . E 5 HOH X 96 496 96 HOH HOH . E 5 HOH X 97 497 97 HOH HOH . E 5 HOH X 98 498 98 HOH HOH . E 5 HOH X 99 499 99 HOH HOH . E 5 HOH X 100 500 100 HOH HOH . E 5 HOH X 101 501 101 HOH HOH . E 5 HOH X 102 502 102 HOH HOH . E 5 HOH X 103 503 103 HOH HOH . E 5 HOH X 104 504 104 HOH HOH . E 5 HOH X 105 505 105 HOH HOH . E 5 HOH X 106 506 106 HOH HOH . E 5 HOH X 107 507 107 HOH HOH . E 5 HOH X 108 508 108 HOH HOH . E 5 HOH X 109 509 109 HOH HOH . E 5 HOH X 110 510 110 HOH HOH . E 5 HOH X 111 511 111 HOH HOH . E 5 HOH X 112 512 112 HOH HOH . E 5 HOH X 113 513 113 HOH HOH . E 5 HOH X 114 514 114 HOH HOH . E 5 HOH X 115 515 115 HOH HOH . E 5 HOH X 116 516 116 HOH HOH . E 5 HOH X 117 517 117 HOH HOH . E 5 HOH X 118 518 118 HOH HOH . E 5 HOH X 119 519 119 HOH HOH . E 5 HOH X 120 520 120 HOH HOH . E 5 HOH X 121 521 121 HOH HOH . E 5 HOH X 122 522 122 HOH HOH . E 5 HOH X 123 523 123 HOH HOH . E 5 HOH X 124 524 124 HOH HOH . E 5 HOH X 125 525 125 HOH HOH . E 5 HOH X 126 526 126 HOH HOH . E 5 HOH X 127 527 127 HOH HOH . E 5 HOH X 128 528 128 HOH HOH . E 5 HOH X 129 529 129 HOH HOH . E 5 HOH X 130 530 130 HOH HOH . E 5 HOH X 131 531 131 HOH HOH . E 5 HOH X 132 532 132 HOH HOH . E 5 HOH X 133 533 133 HOH HOH . E 5 HOH X 134 534 134 HOH HOH . E 5 HOH X 135 535 135 HOH HOH . E 5 HOH X 136 536 136 HOH HOH . E 5 HOH X 137 537 137 HOH HOH . E 5 HOH X 138 538 138 HOH HOH . E 5 HOH X 139 539 139 HOH HOH . E 5 HOH X 140 540 140 HOH HOH . E 5 HOH X 141 541 141 HOH HOH . E 5 HOH X 142 542 142 HOH HOH . E 5 HOH X 143 543 143 HOH HOH . E 5 HOH X 144 544 144 HOH HOH . E 5 HOH X 145 545 145 HOH HOH . E 5 HOH X 146 546 146 HOH HOH . E 5 HOH X 147 547 147 HOH HOH . E 5 HOH X 148 548 148 HOH HOH . E 5 HOH X 149 549 149 HOH HOH . E 5 HOH X 150 550 150 HOH HOH . E 5 HOH X 151 551 151 HOH HOH . E 5 HOH X 152 552 152 HOH HOH . E 5 HOH X 153 553 153 HOH HOH . E 5 HOH X 154 554 154 HOH HOH . E 5 HOH X 155 555 155 HOH HOH . E 5 HOH X 156 556 156 HOH HOH . E 5 HOH X 157 557 157 HOH HOH . E 5 HOH X 158 558 158 HOH HOH . E 5 HOH X 159 559 159 HOH HOH . E 5 HOH X 160 560 160 HOH HOH . E 5 HOH X 161 561 161 HOH HOH . E 5 HOH X 162 562 162 HOH HOH . E 5 HOH X 163 563 163 HOH HOH . E 5 HOH X 164 564 164 HOH HOH . E 5 HOH X 165 565 165 HOH HOH . E 5 HOH X 166 566 166 HOH HOH . E 5 HOH X 167 567 167 HOH HOH . E 5 HOH X 168 568 168 HOH HOH . E 5 HOH X 169 569 169 HOH HOH . E 5 HOH X 170 570 170 HOH HOH . E 5 HOH X 171 571 171 HOH HOH . E 5 HOH X 172 572 172 HOH HOH . E 5 HOH X 173 573 173 HOH HOH . E 5 HOH X 174 574 174 HOH HOH . E 5 HOH X 175 575 175 HOH HOH . E 5 HOH X 176 576 176 HOH HOH . E 5 HOH X 177 577 177 HOH HOH . E 5 HOH X 178 578 178 HOH HOH . E 5 HOH X 179 579 179 HOH HOH . E 5 HOH X 180 580 180 HOH HOH . E 5 HOH X 181 581 181 HOH HOH . E 5 HOH X 182 582 182 HOH HOH . E 5 HOH X 183 583 183 HOH HOH . E 5 HOH X 184 584 184 HOH HOH . E 5 HOH X 185 585 185 HOH HOH . E 5 HOH X 186 586 186 HOH HOH . E 5 HOH X 187 587 187 HOH HOH . E 5 HOH X 188 588 188 HOH HOH . E 5 HOH X 189 589 189 HOH HOH . E 5 HOH X 190 590 190 HOH HOH . E 5 HOH X 191 591 191 HOH HOH . E 5 HOH X 192 592 192 HOH HOH . E 5 HOH X 193 593 193 HOH HOH . E 5 HOH X 194 594 194 HOH HOH . E 5 HOH X 195 595 195 HOH HOH . E 5 HOH X 196 596 196 HOH HOH . E 5 HOH X 197 597 197 HOH HOH . E 5 HOH X 198 598 198 HOH HOH . E 5 HOH X 199 599 199 HOH HOH . E 5 HOH X 200 600 200 HOH HOH . E 5 HOH X 201 601 201 HOH HOH . E 5 HOH X 202 602 202 HOH HOH . E 5 HOH X 203 603 203 HOH HOH . E 5 HOH X 204 604 204 HOH HOH . E 5 HOH X 205 605 205 HOH HOH . E 5 HOH X 206 606 206 HOH HOH . E 5 HOH X 207 607 207 HOH HOH . E 5 HOH X 208 608 208 HOH HOH . E 5 HOH X 209 609 209 HOH HOH . E 5 HOH X 210 610 210 HOH HOH . E 5 HOH X 211 611 211 HOH HOH . E 5 HOH X 212 612 212 HOH HOH . E 5 HOH X 213 613 213 HOH HOH . E 5 HOH X 214 614 214 HOH HOH . E 5 HOH X 215 615 215 HOH HOH . E 5 HOH X 216 616 216 HOH HOH . E 5 HOH X 217 617 217 HOH HOH . E 5 HOH X 218 618 218 HOH HOH . E 5 HOH X 219 619 219 HOH HOH . E 5 HOH X 220 620 220 HOH HOH . E 5 HOH X 221 621 221 HOH HOH . E 5 HOH X 222 622 222 HOH HOH . E 5 HOH X 223 623 223 HOH HOH . E 5 HOH X 224 624 224 HOH HOH . E 5 HOH X 225 625 225 HOH HOH . E 5 HOH X 226 626 226 HOH HOH . E 5 HOH X 227 627 227 HOH HOH . E 5 HOH X 228 628 228 HOH HOH . E 5 HOH X 229 629 229 HOH HOH . E 5 HOH X 230 630 230 HOH HOH . E 5 HOH X 231 631 231 HOH HOH . E 5 HOH X 232 632 232 HOH HOH . E 5 HOH X 233 633 233 HOH HOH . E 5 HOH X 234 634 234 HOH HOH . E 5 HOH X 235 635 235 HOH HOH . E 5 HOH X 236 636 236 HOH HOH . E 5 HOH X 237 637 237 HOH HOH . E 5 HOH X 238 638 238 HOH HOH . E 5 HOH X 239 639 239 HOH HOH . E 5 HOH X 240 640 240 HOH HOH . E 5 HOH X 241 641 241 HOH HOH . E 5 HOH X 242 642 242 HOH HOH . E 5 HOH X 243 643 243 HOH HOH . E 5 HOH X 244 644 244 HOH HOH . E 5 HOH X 245 645 245 HOH HOH . E 5 HOH X 246 646 246 HOH HOH . E 5 HOH X 247 647 247 HOH HOH . E 5 HOH X 248 648 248 HOH HOH . E 5 HOH X 249 649 249 HOH HOH . E 5 HOH X 250 650 250 HOH HOH . E 5 HOH X 251 651 251 HOH HOH . E 5 HOH X 252 652 252 HOH HOH . E 5 HOH X 253 653 253 HOH HOH . E 5 HOH X 254 654 254 HOH HOH . E 5 HOH X 255 655 255 HOH HOH . E 5 HOH X 256 656 256 HOH HOH . E 5 HOH X 257 657 257 HOH HOH . E 5 HOH X 258 658 258 HOH HOH . E 5 HOH X 259 659 259 HOH HOH . E 5 HOH X 260 660 260 HOH HOH . E 5 HOH X 261 661 261 HOH HOH . E 5 HOH X 262 662 262 HOH HOH . E 5 HOH X 263 663 263 HOH HOH . E 5 HOH X 264 664 264 HOH HOH . E 5 HOH X 265 665 265 HOH HOH . E 5 HOH X 266 666 266 HOH HOH . E 5 HOH X 267 667 267 HOH HOH . E 5 HOH X 268 668 268 HOH HOH . E 5 HOH X 269 669 269 HOH HOH . E 5 HOH X 270 670 270 HOH HOH . E 5 HOH X 271 671 271 HOH HOH . E 5 HOH X 272 672 272 HOH HOH . E 5 HOH X 273 673 273 HOH HOH . E 5 HOH X 274 674 274 HOH HOH . E 5 HOH X 275 675 275 HOH HOH . E 5 HOH X 276 676 276 HOH HOH . E 5 HOH X 277 677 277 HOH HOH . E 5 HOH X 278 678 278 HOH HOH . E 5 HOH X 279 679 279 HOH HOH . E 5 HOH X 280 680 280 HOH HOH . E 5 HOH X 281 681 281 HOH HOH . E 5 HOH X 282 682 282 HOH HOH . E 5 HOH X 283 683 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . D 4 1.516 -15.465 1.701 1 36.29 ? C1 MLA 303 X 1 HETATM 2 O O1A MLA . . . D 4 2.586 -14.913 1.147 1 33.68 ? O1A MLA 303 X 1 HETATM 3 O O1B MLA . . . D 4 1.267 -16.643 1.498 1 35.18 ? O1B MLA 303 X 1 HETATM 4 C C2 MLA . . . D 4 0.643 -14.611 2.582 1 37.18 ? C2 MLA 303 X 1 HETATM 5 C C3 MLA . . . D 4 1.574 -13.754 3.409 1 42.96 ? C3 MLA 303 X 1 HETATM 6 O O3A MLA . . . D 4 2.474 -14.289 4.038 1 42.56 ? O3A MLA 303 X 1 HETATM 7 O O3B MLA . . . D 4 1.442 -12.429 3.456 1 41.6 ? O3B MLA 303 X 1 HETATM 8 H H1A MLA . . . D 4 3.091 -15.591 0.677 1 40.36 ? H1A MLA 303 X 1 HETATM 9 H HC21 MLA . . . D 4 -0.012 -13.983 1.975 1 44.57 ? HC21 MLA 303 X 1 HETATM 10 H HC22 MLA . . . D 4 0.028 -15.239 3.231 1 44.57 ? HC22 MLA 303 X 1 HETATM 11 H H3B MLA . . . D 4 0.741 -12.154 2.85 1 49.88 ? H3B MLA 303 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #