data_4HVB # _model_server_result.job_id codZncyvLBCCEybaqHnMTg _model_server_result.datetime_utc '2024-11-15 10:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4HVB # _exptl.entry_id 4HVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.502 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{1-[(2S)-2-hydroxypropanoyl]piperidin-4-yl}-3-methyl-8-(6-methylpyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-c][1,5]naphthyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.48 _cell.angle_gamma 90 _cell.entry_id 4HVB _cell.length_a 144.8 _cell.length_b 67.584 _cell.length_c 106.897 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N6 O3' _chem_comp.formula_weight 446.502 _chem_comp.id 19P _chem_comp.mon_nstd_flag . _chem_comp.name 1-{1-[(2S)-2-hydroxypropanoyl]piperidin-4-yl}-3-methyl-8-(6-methylpyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-c][1,5]naphthyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 19P doub 1 n y C3 C2 19P sing 2 n y N7 C8 19P doub 3 n y N7 C4 19P sing 4 n y C8 C9 19P sing 5 n y C4 C5 19P sing 6 n y C2 C1 19P doub 7 n y C12 N13 19P doub 8 n y C12 C11 19P sing 9 n y C9 C10 19P doub 10 n y C9 N18 19P sing 11 n n C1 N6 19P sing 12 n y C1 C11 19P sing 13 n n C5 N6 19P doub 14 n y C5 C10 19P sing 15 n y N13 C14 19P sing 16 n y C28 N18 19P sing 17 n n C10 N20 19P sing 18 n n C11 C16 19P doub 19 n y N18 C19 19P sing 20 n n C22 C21 19P sing 21 n n C22 C23 19P sing 22 n n C14 C17 19P sing 23 n n C14 C15 19P doub 24 n y N20 C19 19P sing 25 n n N20 C21 19P sing 26 n n C19 O27 19P doub 27 n n C16 C15 19P sing 28 n y C21 C26 19P sing 29 n n C23 N24 19P sing 30 n n C31 O32 19P sing 31 n n C31 C33 19P sing 32 n n C31 C29 19P sing 33 n n C26 C25 19P sing 34 n n N24 C29 19P sing 35 n n N24 C25 19P sing 36 n n C29 O30 19P doub 37 n n C2 H1 19P sing 38 n n C3 H2 19P sing 39 n n C8 H3 19P sing 40 n n C12 H4 19P sing 41 n n C15 H5 19P sing 42 n n C16 H6 19P sing 43 n n C17 H7 19P sing 44 n n C17 H8 19P sing 45 n n C17 H9 19P sing 46 n n C21 H10 19P sing 47 n n C22 H11 19P sing 48 n n C22 H12 19P sing 49 n n C23 H13 19P sing 50 n n C23 H14 19P sing 51 n n C25 H15 19P sing 52 n n C25 H16 19P sing 53 n n C26 H17 19P sing 54 n n C26 H18 19P sing 55 n n C28 H19 19P sing 56 n n C28 H20 19P sing 57 n n C28 H21 19P sing 58 n n C31 H22 19P sing 59 n n O32 H23 19P sing 60 n n C33 H24 19P sing 61 n n C33 H25 19P sing 62 n n C33 H26 19P sing 63 n n # _atom_sites.entry_id 4HVB _atom_sites.fract_transf_matrix[1][1] 0.006906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 19P A 1 1201 1 19P LIG . C 3 HOH A 1 1301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 19P . . . B 2 43.775 13.267 30.474 1 39.82 ? C1 19P 1201 A 1 HETATM 2 C C2 19P . . . B 2 44.188 12.279 29.567 1 38.13 ? C2 19P 1201 A 1 HETATM 3 C C3 19P . . . B 2 45.472 12.273 29.108 1 39.89 ? C3 19P 1201 A 1 HETATM 4 C C4 19P . . . B 2 46.354 13.272 29.564 1 41.75 ? C4 19P 1201 A 1 HETATM 5 C C5 19P . . . B 2 45.872 14.24 30.48 1 42.23 ? C5 19P 1201 A 1 HETATM 6 N N6 19P . . . B 2 44.607 14.2 30.896 1 39.51 ? N6 19P 1201 A 1 HETATM 7 N N7 19P . . . B 2 47.623 13.311 29.144 1 43.96 ? N7 19P 1201 A 1 HETATM 8 C C8 19P . . . B 2 48.462 14.231 29.556 1 44.64 ? C8 19P 1201 A 1 HETATM 9 C C9 19P . . . B 2 48.069 15.223 30.457 1 46.62 ? C9 19P 1201 A 1 HETATM 10 C C10 19P . . . B 2 46.763 15.238 30.932 1 46.09 ? C10 19P 1201 A 1 HETATM 11 C C11 19P . . . B 2 42.375 13.267 30.961 1 38.11 ? C11 19P 1201 A 1 HETATM 12 C C12 19P . . . B 2 41.337 12.839 30.134 1 33.98 ? C12 19P 1201 A 1 HETATM 13 N N13 19P . . . B 2 40.093 12.837 30.566 1 37.48 ? N13 19P 1201 A 1 HETATM 14 C C14 19P . . . B 2 39.778 13.236 31.783 1 35.81 ? C14 19P 1201 A 1 HETATM 15 C C15 19P . . . B 2 40.75 13.677 32.664 1 38.07 ? C15 19P 1201 A 1 HETATM 16 C C16 19P . . . B 2 42.074 13.692 32.259 1 37.69 ? C16 19P 1201 A 1 HETATM 17 C C17 19P . . . B 2 38.337 13.213 32.222 1 37.92 ? C17 19P 1201 A 1 HETATM 18 N N18 19P . . . B 2 48.724 16.297 31.051 1 51.5 ? N18 19P 1201 A 1 HETATM 19 C C19 19P . . . B 2 47.848 16.934 31.852 1 51.7 ? C19 19P 1201 A 1 HETATM 20 N N20 19P . . . B 2 46.655 16.311 31.797 1 49.83 ? N20 19P 1201 A 1 HETATM 21 C C21 19P . . . B 2 45.448 16.706 32.527 1 49.94 ? C21 19P 1201 A 1 HETATM 22 C C22 19P . . . B 2 44.342 17.336 31.678 1 50.24 ? C22 19P 1201 A 1 HETATM 23 C C23 19P . . . B 2 43.44 18.192 32.575 1 52.07 ? C23 19P 1201 A 1 HETATM 24 N N24 19P . . . B 2 42.95 17.36 33.682 1 52.33 ? N24 19P 1201 A 1 HETATM 25 C C25 19P . . . B 2 43.927 16.635 34.508 1 51.53 ? C25 19P 1201 A 1 HETATM 26 C C26 19P . . . B 2 44.823 15.798 33.59 1 51.58 ? C26 19P 1201 A 1 HETATM 27 O O27 19P . . . B 2 48.096 17.919 32.522 1 55.11 ? O27 19P 1201 A 1 HETATM 28 C C28 19P . . . B 2 50.125 16.67 30.843 1 48.9 ? C28 19P 1201 A 1 HETATM 29 C C29 19P . . . B 2 41.631 17.265 33.938 1 55.52 ? C29 19P 1201 A 1 HETATM 30 O O30 19P . . . B 2 41.232 16.51 34.8 1 56.77 ? O30 19P 1201 A 1 HETATM 31 C C31 19P . . . B 2 40.649 18.095 33.152 1 55.76 ? C31 19P 1201 A 1 HETATM 32 O O32 19P . . . B 2 39.317 17.693 33.478 1 60.29 ? O32 19P 1201 A 1 HETATM 33 C C33 19P . . . B 2 40.836 19.573 33.502 1 55.97 ? C33 19P 1201 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #