data_4HVD # _model_server_result.job_id 3N01ujFaSW9Qp1bMCw0XzA _model_server_result.datetime_utc '2024-12-26 17:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4HVD # _exptl.entry_id 4HVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-phenylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HVD _cell.length_a 46.816 _cell.length_b 75.416 _cell.length_c 89.392 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H8 N2 O' _chem_comp.formula_weight 136.151 _chem_comp.id PHU _chem_comp.mon_nstd_flag . _chem_comp.name 1-phenylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Phenylurea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PHU doub 305 n n C1 N2 PHU sing 306 n n C1 N1 PHU sing 307 n n C3 C2 PHU doub 308 n y N1 C2 PHU sing 309 n n C2 C4 PHU sing 310 n y C3 C6 PHU sing 311 n y C3 H3 PHU sing 312 n n C4 C5 PHU doub 313 n y C4 H4 PHU sing 314 n n C7 C5 PHU sing 315 n y C5 H5 PHU sing 316 n n C6 C7 PHU doub 317 n y C6 H6 PHU sing 318 n n C7 H7 PHU sing 319 n n N1 HN1 PHU sing 320 n n N2 HN2 PHU sing 321 n n N2 HN2A PHU sing 322 n n # _atom_sites.entry_id 4HVD _atom_sites.fract_transf_matrix[1][1] 0.02136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHU A 1 1201 1 PHU PHU . C 3 933 A 1 1202 1 933 933 . D 4 HOH A 1 1301 1001 HOH HOH . D 4 HOH A 2 1302 1002 HOH HOH . D 4 HOH A 3 1303 1003 HOH HOH . D 4 HOH A 4 1304 1004 HOH HOH . D 4 HOH A 5 1305 1005 HOH HOH . D 4 HOH A 6 1306 1006 HOH HOH . D 4 HOH A 7 1307 1008 HOH HOH . D 4 HOH A 8 1308 1009 HOH HOH . D 4 HOH A 9 1309 1010 HOH HOH . D 4 HOH A 10 1310 1011 HOH HOH . D 4 HOH A 11 1311 1012 HOH HOH . D 4 HOH A 12 1312 1013 HOH HOH . D 4 HOH A 13 1313 1014 HOH HOH . D 4 HOH A 14 1314 1016 HOH HOH . D 4 HOH A 15 1315 1017 HOH HOH . D 4 HOH A 16 1316 1018 HOH HOH . D 4 HOH A 17 1317 1019 HOH HOH . D 4 HOH A 18 1318 1020 HOH HOH . D 4 HOH A 19 1319 1021 HOH HOH . D 4 HOH A 20 1320 1022 HOH HOH . D 4 HOH A 21 1321 1023 HOH HOH . D 4 HOH A 22 1322 1024 HOH HOH . D 4 HOH A 23 1323 1026 HOH HOH . D 4 HOH A 24 1324 1027 HOH HOH . D 4 HOH A 25 1325 1030 HOH HOH . D 4 HOH A 26 1326 1032 HOH HOH . D 4 HOH A 27 1327 1033 HOH HOH . D 4 HOH A 28 1328 1034 HOH HOH . D 4 HOH A 29 1329 1035 HOH HOH . D 4 HOH A 30 1330 1036 HOH HOH . D 4 HOH A 31 1331 1037 HOH HOH . D 4 HOH A 32 1332 1038 HOH HOH . D 4 HOH A 33 1333 1039 HOH HOH . D 4 HOH A 34 1334 1040 HOH HOH . D 4 HOH A 35 1335 1041 HOH HOH . D 4 HOH A 36 1336 1042 HOH HOH . D 4 HOH A 37 1337 1043 HOH HOH . D 4 HOH A 38 1338 1044 HOH HOH . D 4 HOH A 39 1339 1046 HOH HOH . D 4 HOH A 40 1340 1047 HOH HOH . D 4 HOH A 41 1341 1048 HOH HOH . D 4 HOH A 42 1342 1049 HOH HOH . D 4 HOH A 43 1343 1050 HOH HOH . D 4 HOH A 44 1344 1053 HOH HOH . D 4 HOH A 45 1345 1054 HOH HOH . D 4 HOH A 46 1346 1055 HOH HOH . D 4 HOH A 47 1347 1056 HOH HOH . D 4 HOH A 48 1348 1057 HOH HOH . D 4 HOH A 49 1349 1059 HOH HOH . D 4 HOH A 50 1350 1060 HOH HOH . D 4 HOH A 51 1351 1061 HOH HOH . D 4 HOH A 52 1352 1062 HOH HOH . D 4 HOH A 53 1353 1063 HOH HOH . D 4 HOH A 54 1354 1064 HOH HOH . D 4 HOH A 55 1355 1066 HOH HOH . D 4 HOH A 56 1356 1067 HOH HOH . D 4 HOH A 57 1357 1068 HOH HOH . D 4 HOH A 58 1358 1069 HOH HOH . D 4 HOH A 59 1359 1070 HOH HOH . D 4 HOH A 60 1360 1071 HOH HOH . D 4 HOH A 61 1361 1072 HOH HOH . D 4 HOH A 62 1362 1074 HOH HOH . D 4 HOH A 63 1363 1076 HOH HOH . D 4 HOH A 64 1364 1078 HOH HOH . D 4 HOH A 65 1365 1079 HOH HOH . D 4 HOH A 66 1366 1080 HOH HOH . D 4 HOH A 67 1367 1081 HOH HOH . D 4 HOH A 68 1368 1082 HOH HOH . D 4 HOH A 69 1369 1083 HOH HOH . D 4 HOH A 70 1370 1084 HOH HOH . D 4 HOH A 71 1371 1086 HOH HOH . D 4 HOH A 72 1372 1087 HOH HOH . D 4 HOH A 73 1373 1088 HOH HOH . D 4 HOH A 74 1374 1093 HOH HOH . D 4 HOH A 75 1375 1096 HOH HOH . D 4 HOH A 76 1376 1105 HOH HOH . D 4 HOH A 77 1377 1107 HOH HOH . D 4 HOH A 78 1378 1108 HOH HOH . D 4 HOH A 79 1379 1109 HOH HOH . D 4 HOH A 80 1380 1116 HOH HOH . D 4 HOH A 81 1381 1128 HOH HOH . D 4 HOH A 82 1382 1130 HOH HOH . D 4 HOH A 83 1383 1143 HOH HOH . D 4 HOH A 84 1384 1145 HOH HOH . D 4 HOH A 85 1385 1155 HOH HOH . D 4 HOH A 86 1386 1162 HOH HOH . D 4 HOH A 87 1387 2005 HOH HOH . D 4 HOH A 88 1388 2006 HOH HOH . D 4 HOH A 89 1389 2008 HOH HOH . D 4 HOH A 90 1390 2009 HOH HOH . D 4 HOH A 91 1391 2010 HOH HOH . D 4 HOH A 92 1392 2012 HOH HOH . D 4 HOH A 93 1393 2013 HOH HOH . D 4 HOH A 94 1394 2015 HOH HOH . D 4 HOH A 95 1395 2016 HOH HOH . D 4 HOH A 96 1396 2017 HOH HOH . D 4 HOH A 97 1397 2019 HOH HOH . D 4 HOH A 98 1398 2020 HOH HOH . D 4 HOH A 99 1399 2021 HOH HOH . D 4 HOH A 100 1400 2022 HOH HOH . D 4 HOH A 101 1401 2023 HOH HOH . D 4 HOH A 102 1402 2024 HOH HOH . D 4 HOH A 103 1403 2025 HOH HOH . D 4 HOH A 104 1404 2026 HOH HOH . D 4 HOH A 105 1405 2027 HOH HOH . D 4 HOH A 106 1406 2028 HOH HOH . D 4 HOH A 107 1407 2030 HOH HOH . D 4 HOH A 108 1408 2031 HOH HOH . D 4 HOH A 109 1409 2032 HOH HOH . D 4 HOH A 110 1410 2033 HOH HOH . D 4 HOH A 111 1411 2034 HOH HOH . D 4 HOH A 112 1412 2035 HOH HOH . D 4 HOH A 113 1413 2036 HOH HOH . D 4 HOH A 114 1414 2037 HOH HOH . D 4 HOH A 115 1415 2039 HOH HOH . D 4 HOH A 116 1416 2040 HOH HOH . D 4 HOH A 117 1417 2042 HOH HOH . D 4 HOH A 118 1418 2043 HOH HOH . D 4 HOH A 119 1419 2045 HOH HOH . D 4 HOH A 120 1420 2046 HOH HOH . D 4 HOH A 121 1421 2047 HOH HOH . D 4 HOH A 122 1422 2053 HOH HOH . D 4 HOH A 123 1423 2055 HOH HOH . D 4 HOH A 124 1424 2056 HOH HOH . D 4 HOH A 125 1425 2058 HOH HOH . D 4 HOH A 126 1426 2064 HOH HOH . D 4 HOH A 127 1427 2072 HOH HOH . D 4 HOH A 128 1428 2077 HOH HOH . D 4 HOH A 129 1429 2080 HOH HOH . D 4 HOH A 130 1430 2088 HOH HOH . D 4 HOH A 131 1431 2144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PHU . . . B 2 7.073 -22.324 -28.299 1 35.15 ? C1 PHU 1201 A 1 HETATM 2 C C2 PHU . . . B 2 8.16 -24.349 -27.372 1 34.17 ? C2 PHU 1201 A 1 HETATM 3 C C3 PHU . . . B 2 8.172 -24.987 -26.126 1 34.12 ? C3 PHU 1201 A 1 HETATM 4 C C4 PHU . . . B 2 8.428 -25.094 -28.523 1 34.2 ? C4 PHU 1201 A 1 HETATM 5 C C5 PHU . . . B 2 8.701 -26.452 -28.412 1 34.96 ? C5 PHU 1201 A 1 HETATM 6 C C6 PHU . . . B 2 8.444 -26.343 -26.021 1 34.15 ? C6 PHU 1201 A 1 HETATM 7 C C7 PHU . . . B 2 8.707 -27.077 -27.167 1 34.33 ? C7 PHU 1201 A 1 HETATM 8 N N1 PHU . . . B 2 7.876 -22.97 -27.407 1 33.97 ? N1 PHU 1201 A 1 HETATM 9 N N2 PHU . . . B 2 6.898 -20.991 -28.161 1 32.82 ? N2 PHU 1201 A 1 HETATM 10 O O1 PHU . . . B 2 6.504 -22.9 -29.22 1 35.7 ? O1 PHU 1201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #