data_4HVJ
#
_model_server_result.job_id            JFhb4nI-qJ6Cw5zEsVEujA 
_model_server_result.datetime_utc      '2025-03-13 17:49:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    4HVJ 
#
_exptl.entry_id    4HVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HVJ 
_cell.length_a            42.52 
_cell.length_b            76.25 
_cell.length_c            105.77 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 28 A ASP 7 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 C O2P AMP . A AMP 300 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc3 D MG MG . A MG 301 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc4 D MG MG . A MG 301 1_555 F O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 D MG MG . A MG 301 1_555 F O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc6 D MG MG . A MG 301 1_555 F O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc7 B OD1 ASP 28 B ASP 7 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc8 B O THR 29 B THR 8 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc9 B OD1 ASP 117 B ASP 96 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc10 E MG MG . B MG 301 1_555 G O HOH . B HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4HVJ 
_atom_sites.fract_transf_matrix[1][1]    0.023518 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013115 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 300 300 AMP AMP . 
D 3 MG A 1 301 301 MG MG . 
E 3 MG B 1 301 301 MG MG . 
F 4 HOH A 1 401 1 HOH HOH . 
F 4 HOH A 2 402 2 HOH HOH . 
F 4 HOH A 3 403 3 HOH HOH . 
F 4 HOH A 4 404 4 HOH HOH . 
F 4 HOH A 5 405 7 HOH HOH . 
F 4 HOH A 6 406 9 HOH HOH . 
F 4 HOH A 7 407 14 HOH HOH . 
F 4 HOH A 8 408 15 HOH HOH . 
F 4 HOH A 9 409 16 HOH HOH . 
F 4 HOH A 10 410 18 HOH HOH . 
F 4 HOH A 11 411 19 HOH HOH . 
F 4 HOH A 12 412 23 HOH HOH . 
F 4 HOH A 13 413 24 HOH HOH . 
F 4 HOH A 14 414 25 HOH HOH . 
F 4 HOH A 15 415 27 HOH HOH . 
F 4 HOH A 16 416 29 HOH HOH . 
F 4 HOH A 17 417 30 HOH HOH . 
F 4 HOH A 18 418 32 HOH HOH . 
F 4 HOH A 19 419 33 HOH HOH . 
F 4 HOH A 20 420 35 HOH HOH . 
F 4 HOH A 21 421 38 HOH HOH . 
F 4 HOH A 22 422 39 HOH HOH . 
F 4 HOH A 23 423 45 HOH HOH . 
F 4 HOH A 24 424 46 HOH HOH . 
F 4 HOH A 25 425 47 HOH HOH . 
F 4 HOH A 26 426 50 HOH HOH . 
F 4 HOH A 27 427 53 HOH HOH . 
F 4 HOH A 28 428 54 HOH HOH . 
F 4 HOH A 29 429 56 HOH HOH . 
F 4 HOH A 30 430 60 HOH HOH . 
F 4 HOH A 31 431 62 HOH HOH . 
F 4 HOH A 32 432 64 HOH HOH . 
F 4 HOH A 33 433 65 HOH HOH . 
F 4 HOH A 34 434 67 HOH HOH . 
F 4 HOH A 35 435 71 HOH HOH . 
F 4 HOH A 36 436 74 HOH HOH . 
F 4 HOH A 37 437 75 HOH HOH . 
F 4 HOH A 38 438 77 HOH HOH . 
F 4 HOH A 39 439 78 HOH HOH . 
F 4 HOH A 40 440 80 HOH HOH . 
F 4 HOH A 41 441 82 HOH HOH . 
F 4 HOH A 42 442 83 HOH HOH . 
F 4 HOH A 43 443 84 HOH HOH . 
F 4 HOH A 44 444 86 HOH HOH . 
F 4 HOH A 45 445 89 HOH HOH . 
F 4 HOH A 46 446 90 HOH HOH . 
F 4 HOH A 47 447 91 HOH HOH . 
F 4 HOH A 48 448 96 HOH HOH . 
F 4 HOH A 49 449 97 HOH HOH . 
F 4 HOH A 50 450 98 HOH HOH . 
F 4 HOH A 51 451 100 HOH HOH . 
F 4 HOH A 52 452 103 HOH HOH . 
F 4 HOH A 53 453 107 HOH HOH . 
F 4 HOH A 54 454 109 HOH HOH . 
F 4 HOH A 55 455 110 HOH HOH . 
F 4 HOH A 56 456 111 HOH HOH . 
F 4 HOH A 57 457 115 HOH HOH . 
F 4 HOH A 58 458 120 HOH HOH . 
F 4 HOH A 59 459 124 HOH HOH . 
F 4 HOH A 60 460 125 HOH HOH . 
F 4 HOH A 61 461 126 HOH HOH . 
F 4 HOH A 62 462 127 HOH HOH . 
F 4 HOH A 63 463 130 HOH HOH . 
F 4 HOH A 64 464 131 HOH HOH . 
F 4 HOH A 65 465 132 HOH HOH . 
F 4 HOH A 66 466 133 HOH HOH . 
F 4 HOH A 67 467 134 HOH HOH . 
F 4 HOH A 68 468 135 HOH HOH . 
F 4 HOH A 69 469 136 HOH HOH . 
F 4 HOH A 70 470 137 HOH HOH . 
F 4 HOH A 71 471 139 HOH HOH . 
F 4 HOH A 72 472 140 HOH HOH . 
F 4 HOH A 73 473 141 HOH HOH . 
F 4 HOH A 74 474 142 HOH HOH . 
F 4 HOH A 75 475 143 HOH HOH . 
F 4 HOH A 76 476 165 HOH HOH . 
F 4 HOH A 77 477 167 HOH HOH . 
F 4 HOH A 78 478 168 HOH HOH . 
F 4 HOH A 79 479 169 HOH HOH . 
F 4 HOH A 80 480 170 HOH HOH . 
F 4 HOH A 81 481 171 HOH HOH . 
F 4 HOH A 82 482 172 HOH HOH . 
F 4 HOH A 83 483 173 HOH HOH . 
F 4 HOH A 84 484 174 HOH HOH . 
F 4 HOH A 85 485 177 HOH HOH . 
F 4 HOH A 86 486 178 HOH HOH . 
F 4 HOH A 87 487 179 HOH HOH . 
G 4 HOH B 1 401 5 HOH HOH . 
G 4 HOH B 2 402 6 HOH HOH . 
G 4 HOH B 3 403 8 HOH HOH . 
G 4 HOH B 4 404 11 HOH HOH . 
G 4 HOH B 5 405 13 HOH HOH . 
G 4 HOH B 6 406 17 HOH HOH . 
G 4 HOH B 7 407 20 HOH HOH . 
G 4 HOH B 8 408 21 HOH HOH . 
G 4 HOH B 9 409 22 HOH HOH . 
G 4 HOH B 10 410 26 HOH HOH . 
G 4 HOH B 11 411 28 HOH HOH . 
G 4 HOH B 12 412 31 HOH HOH . 
G 4 HOH B 13 413 34 HOH HOH . 
G 4 HOH B 14 414 36 HOH HOH . 
G 4 HOH B 15 415 37 HOH HOH . 
G 4 HOH B 16 416 40 HOH HOH . 
G 4 HOH B 17 417 41 HOH HOH . 
G 4 HOH B 18 418 42 HOH HOH . 
G 4 HOH B 19 419 44 HOH HOH . 
G 4 HOH B 20 420 48 HOH HOH . 
G 4 HOH B 21 421 49 HOH HOH . 
G 4 HOH B 22 422 51 HOH HOH . 
G 4 HOH B 23 423 52 HOH HOH . 
G 4 HOH B 24 424 55 HOH HOH . 
G 4 HOH B 25 425 57 HOH HOH . 
G 4 HOH B 26 426 58 HOH HOH . 
G 4 HOH B 27 427 59 HOH HOH . 
G 4 HOH B 28 428 61 HOH HOH . 
G 4 HOH B 29 429 63 HOH HOH . 
G 4 HOH B 30 430 66 HOH HOH . 
G 4 HOH B 31 431 68 HOH HOH . 
G 4 HOH B 32 432 69 HOH HOH . 
G 4 HOH B 33 433 73 HOH HOH . 
G 4 HOH B 34 434 76 HOH HOH . 
G 4 HOH B 35 435 79 HOH HOH . 
G 4 HOH B 36 436 81 HOH HOH . 
G 4 HOH B 37 437 85 HOH HOH . 
G 4 HOH B 38 438 87 HOH HOH . 
G 4 HOH B 39 439 88 HOH HOH . 
G 4 HOH B 40 440 92 HOH HOH . 
G 4 HOH B 41 441 93 HOH HOH . 
G 4 HOH B 42 442 95 HOH HOH . 
G 4 HOH B 43 443 99 HOH HOH . 
G 4 HOH B 44 444 101 HOH HOH . 
G 4 HOH B 45 445 102 HOH HOH . 
G 4 HOH B 46 446 105 HOH HOH . 
G 4 HOH B 47 447 106 HOH HOH . 
G 4 HOH B 48 448 108 HOH HOH . 
G 4 HOH B 49 449 112 HOH HOH . 
G 4 HOH B 50 450 113 HOH HOH . 
G 4 HOH B 51 451 114 HOH HOH . 
G 4 HOH B 52 452 117 HOH HOH . 
G 4 HOH B 53 453 118 HOH HOH . 
G 4 HOH B 54 454 119 HOH HOH . 
G 4 HOH B 55 455 122 HOH HOH . 
G 4 HOH B 56 456 123 HOH HOH . 
G 4 HOH B 57 457 138 HOH HOH . 
G 4 HOH B 58 458 145 HOH HOH . 
G 4 HOH B 59 459 146 HOH HOH . 
G 4 HOH B 60 460 147 HOH HOH . 
G 4 HOH B 61 461 148 HOH HOH . 
G 4 HOH B 62 462 149 HOH HOH . 
G 4 HOH B 63 463 150 HOH HOH . 
G 4 HOH B 64 464 151 HOH HOH . 
G 4 HOH B 65 465 152 HOH HOH . 
G 4 HOH B 66 466 153 HOH HOH . 
G 4 HOH B 67 467 154 HOH HOH . 
G 4 HOH B 68 468 155 HOH HOH . 
G 4 HOH B 69 469 156 HOH HOH . 
G 4 HOH B 70 470 157 HOH HOH . 
G 4 HOH B 71 471 159 HOH HOH . 
G 4 HOH B 72 472 160 HOH HOH . 
G 4 HOH B 73 473 161 HOH HOH . 
G 4 HOH B 74 474 162 HOH HOH . 
G 4 HOH B 75 475 163 HOH HOH . 
G 4 HOH B 76 476 164 HOH HOH . 
G 4 HOH B 77 477 166 HOH HOH . 
G 4 HOH B 78 478 175 HOH HOH . 
G 4 HOH B 79 479 176 HOH HOH . 
G 4 HOH B 80 480 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 2 -5.469 11.377 76.904 1 53.79 ? P AMP 300 A 1 
HETATM 2 O O1P AMP . . . C 2 -6.934 11.137 77.195 1 50.48 ? O1P AMP 300 A 1 
HETATM 3 O O2P AMP . . . C 2 -4.72 12.352 77.81 1 48.72 ? O2P AMP 300 A 1 
HETATM 4 O O3P AMP . . . C 2 -5.21 11.72 75.444 1 49.37 ? O3P AMP 300 A 1 
HETATM 5 O O5' AMP . . . C 2 -4.937 9.865 77.202 1 47.88 ? O5' AMP 300 A 1 
HETATM 6 C C5' AMP . . . C 2 -3.716 9.537 77.867 1 45.64 ? C5' AMP 300 A 1 
HETATM 7 C C4' AMP . . . C 2 -3.247 8.11 77.562 1 44.09 ? C4' AMP 300 A 1 
HETATM 8 O O4' AMP . . . C 2 -4.094 7.167 78.244 1 45.9 ? O4' AMP 300 A 1 
HETATM 9 C C3' AMP . . . C 2 -3.238 7.705 76.08 1 42.89 ? C3' AMP 300 A 1 
HETATM 10 O O3' AMP . . . C 2 -2.012 8.026 75.385 1 37.29 ? O3' AMP 300 A 1 
HETATM 11 C C2' AMP . . . C 2 -3.569 6.201 76.11 1 44.13 ? C2' AMP 300 A 1 
HETATM 12 O O2' AMP . . . C 2 -2.434 5.311 76.13 1 36 ? O2' AMP 300 A 1 
HETATM 13 C C1' AMP . . . C 2 -4.401 6.052 77.387 1 45.42 ? C1' AMP 300 A 1 
HETATM 14 N N9 AMP . . . C 2 -5.844 6.055 77.015 1 52.99 ? N9 AMP 300 A 1 
HETATM 15 C C8 AMP . . . C 2 -6.743 7.059 77.196 1 52.07 ? C8 AMP 300 A 1 
HETATM 16 N N7 AMP . . . C 2 -7.955 6.689 76.717 1 53.45 ? N7 AMP 300 A 1 
HETATM 17 C C5 AMP . . . C 2 -7.838 5.446 76.222 1 54.79 ? C5 AMP 300 A 1 
HETATM 18 C C6 AMP . . . C 2 -8.73 4.458 75.579 1 56.03 ? C6 AMP 300 A 1 
HETATM 19 N N6 AMP . . . C 2 -10.024 4.769 75.368 1 55.63 ? N6 AMP 300 A 1 
HETATM 20 N N1 AMP . . . C 2 -8.213 3.265 75.199 1 57.62 ? N1 AMP 300 A 1 
HETATM 21 C C2 AMP . . . C 2 -6.916 2.949 75.395 1 58.4 ? C2 AMP 300 A 1 
HETATM 22 N N3 AMP . . . C 2 -6.055 3.797 75.996 1 57.36 ? N3 AMP 300 A 1 
HETATM 23 C C4 AMP . . . C 2 -6.448 5.029 76.416 1 54.68 ? C4 AMP 300 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#