data_4HVN # _model_server_result.job_id Ja4PhJiX0xrYa7RW7Wmv1w _model_server_result.datetime_utc '2024-12-27 02:04:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4HVN # _exptl.entry_id 4HVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-dimethylmethanamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.73 _cell.angle_gamma 90 _cell.entry_id 4HVN _cell.length_a 45.072 _cell.length_b 61.07 _cell.length_c 51.948 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 64 A THR 40 1_555 A N MSE 65 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 65 A MSE 41 1_555 A N THR 66 A THR 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C ALA 80 A ALA 56 1_555 A N MSE 81 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 81 A MSE 57 1_555 A N ILE 82 A ILE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C PRO 119 A PRO 95 1_555 A N MSE 120 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 120 A MSE 96 1_555 A N ALA 121 A ALA 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale7 B C THR 64 B THR 40 1_555 B N MSE 65 B MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 65 B MSE 41 1_555 B N THR 66 B THR 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale9 B C ALA 80 B ALA 56 1_555 B N MSE 81 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 81 B MSE 57 1_555 B N ILE 82 B ILE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 B C PRO 119 B PRO 95 1_555 B N MSE 120 B MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 120 B MSE 96 1_555 B N ALA 121 B ALA 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H9 N' _chem_comp.formula_weight 59.11 _chem_comp.id KEN _chem_comp.mon_nstd_flag . _chem_comp.name N,N-dimethylmethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 NE1 KEN sing 160 n n CA1 HA1 KEN sing 161 n n CA1 HA1A KEN sing 162 n n CA1 HA1B KEN sing 163 n n NE1 CB1 KEN sing 164 n n CB1 HB1 KEN sing 165 n n CB1 HB1A KEN sing 166 n n CB1 HB1B KEN sing 167 n n CC1 NE1 KEN sing 168 n n CC1 HC1 KEN sing 169 n n CC1 HC1A KEN sing 170 n n CC1 HC1B KEN sing 171 n n # _atom_sites.entry_id 4HVN _atom_sites.fract_transf_matrix[1][1] 0.022187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00542 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KEN A 1 201 1 KEN TMN . D 2 KEN A 1 202 3 KEN TMN . E 2 KEN B 1 201 2 KEN TMN . F 2 KEN B 1 202 4 KEN TMN . G 3 HOH A 1 301 1 HOH HOH . G 3 HOH A 2 302 2 HOH HOH . G 3 HOH A 3 303 3 HOH HOH . G 3 HOH A 4 304 4 HOH HOH . G 3 HOH A 5 305 5 HOH HOH . G 3 HOH A 6 306 6 HOH HOH . G 3 HOH A 7 307 7 HOH HOH . G 3 HOH A 8 308 8 HOH HOH . G 3 HOH A 9 309 9 HOH HOH . G 3 HOH A 10 310 12 HOH HOH . G 3 HOH A 11 311 13 HOH HOH . G 3 HOH A 12 312 14 HOH HOH . G 3 HOH A 13 313 15 HOH HOH . G 3 HOH A 14 314 16 HOH HOH . G 3 HOH A 15 315 17 HOH HOH . G 3 HOH A 16 316 18 HOH HOH . G 3 HOH A 17 317 19 HOH HOH . G 3 HOH A 18 318 21 HOH HOH . G 3 HOH A 19 319 23 HOH HOH . G 3 HOH A 20 320 24 HOH HOH . G 3 HOH A 21 321 25 HOH HOH . G 3 HOH A 22 322 27 HOH HOH . G 3 HOH A 23 323 28 HOH HOH . G 3 HOH A 24 324 41 HOH HOH . G 3 HOH A 25 325 42 HOH HOH . G 3 HOH A 26 326 43 HOH HOH . G 3 HOH A 27 327 44 HOH HOH . G 3 HOH A 28 328 45 HOH HOH . G 3 HOH A 29 329 46 HOH HOH . G 3 HOH A 30 330 47 HOH HOH . G 3 HOH A 31 331 48 HOH HOH . G 3 HOH A 32 332 51 HOH HOH . G 3 HOH A 33 333 53 HOH HOH . G 3 HOH A 34 334 54 HOH HOH . G 3 HOH A 35 335 55 HOH HOH . G 3 HOH A 36 336 61 HOH HOH . G 3 HOH A 37 337 67 HOH HOH . G 3 HOH A 38 338 68 HOH HOH . G 3 HOH A 39 339 69 HOH HOH . G 3 HOH A 40 340 70 HOH HOH . G 3 HOH A 41 341 72 HOH HOH . G 3 HOH A 42 342 75 HOH HOH . G 3 HOH A 43 343 77 HOH HOH . G 3 HOH A 44 344 78 HOH HOH . G 3 HOH A 45 345 81 HOH HOH . G 3 HOH A 46 346 82 HOH HOH . H 3 HOH B 1 301 10 HOH HOH . H 3 HOH B 2 302 11 HOH HOH . H 3 HOH B 3 303 20 HOH HOH . H 3 HOH B 4 304 22 HOH HOH . H 3 HOH B 5 305 29 HOH HOH . H 3 HOH B 6 306 30 HOH HOH . H 3 HOH B 7 307 31 HOH HOH . H 3 HOH B 8 308 32 HOH HOH . H 3 HOH B 9 309 33 HOH HOH . H 3 HOH B 10 310 34 HOH HOH . H 3 HOH B 11 311 35 HOH HOH . H 3 HOH B 12 312 36 HOH HOH . H 3 HOH B 13 313 37 HOH HOH . H 3 HOH B 14 314 38 HOH HOH . H 3 HOH B 15 315 39 HOH HOH . H 3 HOH B 16 316 40 HOH HOH . H 3 HOH B 17 317 49 HOH HOH . H 3 HOH B 18 318 50 HOH HOH . H 3 HOH B 19 319 52 HOH HOH . H 3 HOH B 20 320 56 HOH HOH . H 3 HOH B 21 321 57 HOH HOH . H 3 HOH B 22 322 58 HOH HOH . H 3 HOH B 23 323 59 HOH HOH . H 3 HOH B 24 324 60 HOH HOH . H 3 HOH B 25 325 62 HOH HOH . H 3 HOH B 26 326 63 HOH HOH . H 3 HOH B 27 327 65 HOH HOH . H 3 HOH B 28 328 66 HOH HOH . H 3 HOH B 29 329 71 HOH HOH . H 3 HOH B 30 330 73 HOH HOH . H 3 HOH B 31 331 74 HOH HOH . H 3 HOH B 32 332 76 HOH HOH . H 3 HOH B 33 333 79 HOH HOH . H 3 HOH B 34 334 80 HOH HOH . H 3 HOH B 35 335 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 KEN . . . D 2 -8.484 9.414 1.127 1 67.82 ? CA1 KEN 202 A 1 HETATM 2 C CB1 KEN . . . D 2 -6.661 10.792 0.229 1 67.22 ? CB1 KEN 202 A 1 HETATM 3 C CC1 KEN . . . D 2 -8.672 11.831 1.139 1 69.39 ? CC1 KEN 202 A 1 HETATM 4 N NE1 KEN . . . D 2 -8.125 10.663 0.426 1 69.49 ? NE1 KEN 202 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #