data_4HVP # _model_server_result.job_id nrwVG0OBQCaWdWMjBITdEA _model_server_result.datetime_utc '2024-10-12 13:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":0}' # _entry.id 4HVP # _exptl.entry_id 4HVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.983 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HVP _cell.length_a 51.7 _cell.length_b 59.2 _cell.length_c 62.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale4 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 B C ILE 66 B ILE 66 1_555 B N ABA 67 B ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C ABA 67 B ABA 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale7 B C GLY 94 B GLY 94 1_555 B N ABA 95 B ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale8 B C ABA 95 B ABA 95 1_555 B N THR 96 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C35 H68 N11 O8 1' _chem_comp.formula_weight 770.983 _chem_comp.id 2NC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms p2/NC # _atom_sites.entry_id 4HVP _atom_sites.fract_transf_matrix[1][1] 0.019342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC B 1 0 0 2NC ACE . D 3 HOH A 1 402 402 HOH HOH . D 3 HOH A 2 403 403 HOH HOH . D 3 HOH A 3 404 404 HOH HOH . D 3 HOH A 4 405 405 HOH HOH . D 3 HOH A 5 410 410 HOH HOH . D 3 HOH A 6 412 412 HOH HOH . D 3 HOH A 7 413 413 HOH HOH . D 3 HOH A 8 416 416 HOH HOH . D 3 HOH A 9 431 431 HOH HOH . D 3 HOH A 10 432 432 HOH HOH . D 3 HOH A 11 436 436 HOH HOH . D 3 HOH A 12 440 440 HOH HOH . D 3 HOH A 13 441 441 HOH HOH . D 3 HOH A 14 501 501 HOH HOH . D 3 HOH A 15 502 502 HOH HOH . D 3 HOH A 16 506 506 HOH HOH . D 3 HOH A 17 507 507 HOH HOH . D 3 HOH A 18 526 526 HOH HOH . D 3 HOH A 19 528 528 HOH HOH . D 3 HOH A 20 548 548 HOH HOH . D 3 HOH A 21 554 554 HOH HOH . D 3 HOH A 22 555 555 HOH HOH . D 3 HOH A 23 601 601 HOH HOH . D 3 HOH A 24 603 603 HOH HOH . D 3 HOH A 25 606 606 HOH HOH . D 3 HOH A 26 614 614 HOH HOH . D 3 HOH A 27 615 615 HOH HOH . D 3 HOH A 28 625 625 HOH HOH . D 3 HOH A 29 628 628 HOH HOH . D 3 HOH A 30 633 633 HOH HOH . D 3 HOH A 31 638 638 HOH HOH . D 3 HOH A 32 641 641 HOH HOH . D 3 HOH A 33 645 645 HOH HOH . D 3 HOH A 34 646 646 HOH HOH . D 3 HOH A 35 647 647 HOH HOH . D 3 HOH A 36 650 650 HOH HOH . E 3 HOH B 1 407 407 HOH HOH . E 3 HOH B 2 408 408 HOH HOH . E 3 HOH B 3 411 411 HOH HOH . E 3 HOH B 4 419 419 HOH HOH . E 3 HOH B 5 420 420 HOH HOH . E 3 HOH B 6 423 423 HOH HOH . E 3 HOH B 7 424 424 HOH HOH . E 3 HOH B 8 427 427 HOH HOH . E 3 HOH B 9 428 428 HOH HOH . E 3 HOH B 10 429 429 HOH HOH . E 3 HOH B 11 433 433 HOH HOH . E 3 HOH B 12 434 434 HOH HOH . E 3 HOH B 13 438 438 HOH HOH . E 3 HOH B 14 503 503 HOH HOH . E 3 HOH B 15 510 510 HOH HOH . E 3 HOH B 16 511 511 HOH HOH . E 3 HOH B 17 515 515 HOH HOH . E 3 HOH B 18 519 519 HOH HOH . E 3 HOH B 19 532 532 HOH HOH . E 3 HOH B 20 533 533 HOH HOH . E 3 HOH B 21 534 534 HOH HOH . E 3 HOH B 22 539 539 HOH HOH . E 3 HOH B 23 545 545 HOH HOH . E 3 HOH B 24 550 550 HOH HOH . E 3 HOH B 25 553 553 HOH HOH . E 3 HOH B 26 556 556 HOH HOH . E 3 HOH B 27 608 608 HOH HOH . E 3 HOH B 28 611 611 HOH HOH . E 3 HOH B 29 617 617 HOH HOH . E 3 HOH B 30 621 621 HOH HOH . E 3 HOH B 31 624 624 HOH HOH . E 3 HOH B 32 639 639 HOH HOH . E 3 HOH B 33 644 644 HOH HOH . E 3 HOH B 34 648 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2NC . . . C 2 1.972 4.392 7.997 1 11.46 ? C 2NC 0 B 1 HETATM 2 O O 2NC . . . C 2 1.909 3.348 7.368 1 17.92 ? O 2NC 0 B 1 HETATM 3 C CH3 2NC . . . C 2 1.165 5.616 7.788 1 20.43 ? CH3 2NC 0 B 1 HETATM 4 N N 2NC . . . C 2 2.741 4.491 9.062 1 15.09 ? N 2NC 0 B 1 HETATM 5 C CA 2NC . . . C 2 3.774 3.51 9.419 1 13.83 ? CA 2NC 0 B 1 HETATM 6 C C1 2NC . . . C 2 3.478 3.163 10.865 1 12.56 ? C1 2NC 0 B 1 HETATM 7 O O1 2NC . . . C 2 3.377 3.981 11.811 1 11.02 ? O1 2NC 0 B 1 HETATM 8 C CB 2NC . . . C 2 5.026 4.32 8.954 1 24.09 ? CB 2NC 0 B 1 HETATM 9 O OG1 2NC . . . C 2 5.156 4.021 7.511 1 28.97 ? OG1 2NC 0 B 1 HETATM 10 C CG2 2NC . . . C 2 6.347 4.222 9.744 1 30.52 ? CG2 2NC 0 B 1 HETATM 11 N N1 2NC . . . C 2 3.32 1.867 11.1 1 12.36 ? N1 2NC 0 B 1 HETATM 12 C CA1 2NC . . . C 2 2.93 1.455 12.502 1 12.38 ? CA1 2NC 0 B 1 HETATM 13 C C2 2NC . . . C 2 4.013 0.549 12.965 1 11.01 ? C2 2NC 0 B 1 HETATM 14 O O2 2NC . . . C 2 4.246 -0.672 12.858 1 12.4 ? O2 2NC 0 B 1 HETATM 15 C CB1 2NC . . . C 2 1.356 1.433 12.299 1 11.86 ? CB1 2NC 0 B 1 HETATM 16 C CG1 2NC . . . C 2 0.89 0.856 10.985 1 16.23 ? CG1 2NC 0 B 1 HETATM 17 C CG21 2NC . . . C 2 0.606 2.862 12.245 1 10.98 ? CG21 2NC 0 B 1 HETATM 18 C CD1 2NC . . . C 2 -0.373 1.599 10.385 1 21.77 ? CD1 2NC 0 B 1 HETATM 19 N N2 2NC . . . C 2 4.96 1.206 13.614 1 12.02 ? N2 2NC 0 B 1 HETATM 20 C CA2 2NC . . . C 2 6.191 0.49 14.14 1 12.08 ? CA2 2NC 0 B 1 HETATM 21 C C3 2NC . . . C 2 5.901 0.072 15.58 1 10.81 ? C3 2NC 0 B 1 HETATM 22 C CB2 2NC . . . C 2 7.501 1.159 13.886 1 16.12 ? CB2 2NC 0 B 1 HETATM 23 C CG 2NC . . . C 2 7.941 1.597 12.492 1 17.02 ? CG 2NC 0 B 1 HETATM 24 C CD 2NC . . . C 2 8.433 0.455 11.627 1 19.57 ? CD 2NC 0 B 1 HETATM 25 C CE 2NC . . . C 2 9.251 1.045 10.469 1 21.03 ? CE 2NC 0 B 1 HETATM 26 N N3 2NC . . . C 2 4.976 -0.998 15.428 1 10.44 ? N3 2NC 0 B 1 HETATM 27 C CA3 2NC . . . C 2 5.088 -2.133 16.334 1 9.67 ? CA3 2NC 0 B 1 HETATM 28 C C4 2NC . . . C 2 5.96 -3.244 15.785 1 7.72 ? C4 2NC 0 B 1 HETATM 29 O O3 2NC . . . C 2 6.279 -3.633 14.656 1 7.54 ? O3 2NC 0 B 1 HETATM 30 C CB3 2NC . . . C 2 3.677 -2.605 16.613 1 9.8 ? CB3 2NC 0 B 1 HETATM 31 C CG3 2NC . . . C 2 3.081 -3.64 17.504 1 8.61 ? CG3 2NC 0 B 1 HETATM 32 C CD2 2NC . . . C 2 2.928 -5.033 16.925 1 8.74 ? CD2 2NC 0 B 1 HETATM 33 C CE1 2NC . . . C 2 2.269 -5.045 15.573 1 5.59 ? CE1 2NC 0 B 1 HETATM 34 N N4 2NC . . . C 2 6.48 -3.941 16.752 1 8.85 ? N4 2NC 0 B 1 HETATM 35 C CA4 2NC . . . C 2 7.415 -5.105 16.501 1 9.73 ? CA4 2NC 0 B 1 HETATM 36 C C5 2NC . . . C 2 7.122 -5.961 17.714 1 12.57 ? C5 2NC 0 B 1 HETATM 37 O O4 2NC . . . C 2 7.055 -5.729 18.95 1 9.49 ? O4 2NC 0 B 1 HETATM 38 C CB4 2NC . . . C 2 8.655 -4.507 16.039 1 15.19 ? CB4 2NC 0 B 1 HETATM 39 C CG4 2NC . . . C 2 10.062 -4.804 15.744 1 22.73 ? CG4 2NC 0 B 1 HETATM 40 C CD3 2NC . . . C 2 10.324 -5.85 16.823 1 24 ? CD3 2NC 0 B 1 HETATM 41 O OE1 2NC . . . C 2 10.87 -5.62 17.85 1 24.95 ? OE1 2NC 0 B 1 HETATM 42 N NE2 2NC . . . C 2 9.724 -6.954 16.381 1 30.18 ? NE2 2NC 0 B 1 HETATM 43 N N5 2NC . . . C 2 6.731 -7.137 17.212 1 14.57 ? N5 2NC 0 B 1 HETATM 44 C CA5 2NC . . . C 2 6.384 -8.274 18.13 1 17.16 ? CA5 2NC 0 B 1 HETATM 45 C C6 2NC . . . C 2 7.734 -8.869 18.521 1 17.68 ? C6 2NC 0 B 1 HETATM 46 O O5 2NC . . . C 2 8.612 -9.201 17.671 1 20.08 ? O5 2NC 0 B 1 HETATM 47 C CB5 2NC . . . C 2 5.467 -9.154 17.257 1 17.84 ? CB5 2NC 0 B 1 HETATM 48 C CG5 2NC . . . C 2 4.061 -8.676 17.136 1 18.74 ? CG5 2NC 0 B 1 HETATM 49 C CD4 2NC . . . C 2 3.378 -8.724 18.483 1 29.37 ? CD4 2NC 0 B 1 HETATM 50 N NE 2NC . . . C 2 3.481 -7.646 19.439 1 30.2 ? NE 2NC 0 B 1 HETATM 51 C CZ 2NC . . . C 2 4.147 -7.396 20.556 1 33.2 ? CZ 2NC 0 B 1 HETATM 52 N NH1 2NC . . . C 2 4.195 -6.195 21.198 1 28.99 ? NH1 2NC 0 B 1 HETATM 53 N NH2 2NC . . . C 2 4.843 -8.425 21.099 1 34.66 ? NH2 2NC 0 B 1 HETATM 54 N N6 2NC . . . C 2 8.152 -9.119 19.639 1 19.2 ? N6 2NC 0 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #