data_4HWL # _model_server_result.job_id bij8-vOwPTGwqivzMEvSVQ _model_server_result.datetime_utc '2024-12-21 16:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4HWL # _exptl.entry_id 4HWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.27 _cell.angle_gamma 90 _cell.entry_id 4HWL _cell.length_a 46.16 _cell.length_b 113.29 _cell.length_c 56.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 A,C,D,E,F,G,H,M 3 1 B,I,J,K,L,N 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 23.063826 0 51.22385 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 229 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B NZ LYS 229 B LYS 216 1_555 I C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 297 n n C1 C6 RET sing 298 n n C1 C16 RET sing 299 n n C1 C17 RET sing 300 n n C2 C3 RET sing 301 n n C2 H21 RET sing 302 n n C2 H22 RET sing 303 n n C3 C4 RET sing 304 n n C3 H31 RET sing 305 n n C3 H32 RET sing 306 n n C4 C5 RET sing 307 n n C4 H41 RET sing 308 n n C4 H42 RET sing 309 n n C5 C6 RET doub 310 n n C5 C18 RET sing 311 n n C6 C7 RET sing 312 n n C7 C8 RET doub 313 e n C7 H7 RET sing 314 n n C8 C9 RET sing 315 n n C8 H8 RET sing 316 n n C9 C10 RET doub 317 e n C9 C19 RET sing 318 n n C10 C11 RET sing 319 n n C10 H10 RET sing 320 n n C11 C12 RET doub 321 e n C11 H11 RET sing 322 n n C12 C13 RET sing 323 n n C12 H12 RET sing 324 n n C13 C14 RET doub 325 e n C13 C20 RET sing 326 n n C14 C15 RET sing 327 n n C14 H14 RET sing 328 n n C15 O1 RET doub 329 n n C15 H15 RET sing 330 n n C16 H161 RET sing 331 n n C16 H162 RET sing 332 n n C16 H163 RET sing 333 n n C17 H171 RET sing 334 n n C17 H172 RET sing 335 n n C17 H173 RET sing 336 n n C18 H181 RET sing 337 n n C18 H182 RET sing 338 n n C18 H183 RET sing 339 n n C19 H191 RET sing 340 n n C19 H192 RET sing 341 n n C19 H193 RET sing 342 n n C20 H201 RET sing 343 n n C20 H202 RET sing 344 n n C20 H203 RET sing 345 n n # _atom_sites.entry_id 4HWL _atom_sites.fract_transf_matrix[1][1] 0.021664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 HEX A 1 302 1 HEX HEX . E 4 HP6 A 1 303 4 HP6 HP6 . F 4 HP6 A 1 304 5 HP6 HP6 . G 4 HP6 A 1 305 6 HP6 HP6 . H 3 HEX A 1 306 7 HEX HEX . I 2 RET B 1 301 302 RET RET . J 5 GOL B 1 302 1 GOL GOL . K 3 HEX B 1 303 2 HEX HEX . L 3 HEX B 1 304 3 HEX HEX . M 6 HOH A 1 401 1 HOH HOH . M 6 HOH A 2 402 2 HOH HOH . M 6 HOH A 3 403 3 HOH HOH . M 6 HOH A 4 404 4 HOH HOH . M 6 HOH A 5 405 5 HOH HOH . M 6 HOH A 6 406 6 HOH HOH . M 6 HOH A 7 407 10 HOH HOH . M 6 HOH A 8 408 14 HOH HOH . M 6 HOH A 9 409 20 HOH HOH . M 6 HOH A 10 410 21 HOH HOH . M 6 HOH A 11 411 22 HOH HOH . M 6 HOH A 12 412 23 HOH HOH . M 6 HOH A 13 413 24 HOH HOH . M 6 HOH A 14 414 25 HOH HOH . M 6 HOH A 15 415 27 HOH HOH . M 6 HOH A 16 416 31 HOH HOH . M 6 HOH A 17 417 32 HOH HOH . N 6 HOH B 1 401 7 HOH HOH . N 6 HOH B 2 402 8 HOH HOH . N 6 HOH B 3 403 9 HOH HOH . N 6 HOH B 4 404 11 HOH HOH . N 6 HOH B 5 405 12 HOH HOH . N 6 HOH B 6 406 13 HOH HOH . N 6 HOH B 7 407 15 HOH HOH . N 6 HOH B 8 408 16 HOH HOH . N 6 HOH B 9 409 17 HOH HOH . N 6 HOH B 10 410 18 HOH HOH . N 6 HOH B 11 411 19 HOH HOH . N 6 HOH B 12 412 26 HOH HOH . N 6 HOH B 13 413 28 HOH HOH . N 6 HOH B 14 414 29 HOH HOH . N 6 HOH B 15 415 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 2 21.808 1.151 -0.124 1 24.69 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . C 2 22.625 -0.032 0.351 1 29.37 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . C 2 23.179 -0.018 1.713 1 27.78 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . C 2 23.781 1.263 2.214 1 25.23 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . C 2 23.051 2.444 1.695 1 23.53 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . C 2 22.114 2.414 0.67 1 26.15 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . C 2 21.469 3.695 0.325 1 27.94 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . C 2 20.572 3.893 -0.654 1 26.15 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . C 2 19.885 5.156 -0.928 1 21.26 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . C 2 18.977 5.053 -1.932 1 19.3 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . C 2 18.162 6.109 -2.375 1 22.09 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . C 2 17.264 5.887 -3.275 1 23.06 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . C 2 16.413 6.917 -3.824 1 28.4 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . C 2 15.737 6.38 -4.798 1 31.92 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . C 2 14.845 7.139 -5.546 1 26.92 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . C 2 22.187 1.204 -1.563 1 23.43 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . C 2 20.286 0.885 -0.055 1 21.1 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . C 2 23.45 3.677 2.408 1 19.45 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . C 2 20.075 6.432 -0.179 1 19.52 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . C 2 16.329 8.364 -3.514 1 27.76 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #