data_4HWL # _model_server_result.job_id 1cdMqE9PiSTF4E86DmDyNA _model_server_result.datetime_utc '2024-12-21 17:14:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 4HWL # _exptl.entry_id 4HWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.27 _cell.angle_gamma 90 _cell.entry_id 4HWL _cell.length_a 46.16 _cell.length_b 113.29 _cell.length_c 56.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 A,C,D,E,F,G,H,M 3 1 B,I,J,K,L,N 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 23.063826 0 51.22385 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 229 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B NZ LYS 229 B LYS 216 1_555 I C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4HWL _atom_sites.fract_transf_matrix[1][1] 0.021664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 HEX A 1 302 1 HEX HEX . E 4 HP6 A 1 303 4 HP6 HP6 . F 4 HP6 A 1 304 5 HP6 HP6 . G 4 HP6 A 1 305 6 HP6 HP6 . H 3 HEX A 1 306 7 HEX HEX . I 2 RET B 1 301 302 RET RET . J 5 GOL B 1 302 1 GOL GOL . K 3 HEX B 1 303 2 HEX HEX . L 3 HEX B 1 304 3 HEX HEX . M 6 HOH A 1 401 1 HOH HOH . M 6 HOH A 2 402 2 HOH HOH . M 6 HOH A 3 403 3 HOH HOH . M 6 HOH A 4 404 4 HOH HOH . M 6 HOH A 5 405 5 HOH HOH . M 6 HOH A 6 406 6 HOH HOH . M 6 HOH A 7 407 10 HOH HOH . M 6 HOH A 8 408 14 HOH HOH . M 6 HOH A 9 409 20 HOH HOH . M 6 HOH A 10 410 21 HOH HOH . M 6 HOH A 11 411 22 HOH HOH . M 6 HOH A 12 412 23 HOH HOH . M 6 HOH A 13 413 24 HOH HOH . M 6 HOH A 14 414 25 HOH HOH . M 6 HOH A 15 415 27 HOH HOH . M 6 HOH A 16 416 31 HOH HOH . M 6 HOH A 17 417 32 HOH HOH . N 6 HOH B 1 401 7 HOH HOH . N 6 HOH B 2 402 8 HOH HOH . N 6 HOH B 3 403 9 HOH HOH . N 6 HOH B 4 404 11 HOH HOH . N 6 HOH B 5 405 12 HOH HOH . N 6 HOH B 6 406 13 HOH HOH . N 6 HOH B 7 407 15 HOH HOH . N 6 HOH B 8 408 16 HOH HOH . N 6 HOH B 9 409 17 HOH HOH . N 6 HOH B 10 410 18 HOH HOH . N 6 HOH B 11 411 19 HOH HOH . N 6 HOH B 12 412 26 HOH HOH . N 6 HOH B 13 413 28 HOH HOH . N 6 HOH B 14 414 29 HOH HOH . N 6 HOH B 15 415 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 5 -3.469 25.214 -38.046 1 56.63 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . J 5 -3.152 25.469 -39.417 1 49.83 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . J 5 -4.813 24.537 -37.862 1 56.29 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . J 5 -4.687 23.612 -36.752 1 56.64 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . J 5 -5.904 25.577 -37.645 1 51.4 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . J 5 -7.19 25.251 -38.216 1 54.54 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1318 _model_server_stats.encode_time_ms 36 _model_server_stats.element_count 6 #