data_4HX0 # _model_server_result.job_id lz15OMs2cy-AJpaXBvuqNw _model_server_result.datetime_utc '2024-10-28 13:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 4HX0 # _exptl.entry_id 4HX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.05 _cell.angle_gamma 90 _cell.entry_id 4HX0 _cell.length_a 63.196 _cell.length_b 52.722 _cell.length_c 53.508 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 38 A ALA 33 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc2 A O VAL 42 A VAL 37 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc3 D NA NA . A NA 203 1_555 V O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 252 n n C1 H11 MPD sing 253 n n C1 H12 MPD sing 254 n n C1 H13 MPD sing 255 n n C2 O2 MPD sing 256 n n C2 CM MPD sing 257 n n C2 C3 MPD sing 258 n n O2 HO2 MPD sing 259 n n CM HM1 MPD sing 260 n n CM HM2 MPD sing 261 n n CM HM3 MPD sing 262 n n C3 C4 MPD sing 263 n n C3 H31 MPD sing 264 n n C3 H32 MPD sing 265 n n C4 O4 MPD sing 266 n n C4 C5 MPD sing 267 n n C4 H4 MPD sing 268 n n O4 HO4 MPD sing 269 n n C5 H51 MPD sing 270 n n C5 H52 MPD sing 271 n n C5 H53 MPD sing 272 n n # _atom_sites.entry_id 4HX0 _atom_sites.fract_transf_matrix[1][1] 0.015824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 157 NA NA . C 2 NA A 1 202 158 NA NA . D 2 NA A 1 203 159 NA NA . E 3 MPD A 1 204 1 MPD MPD . F 3 MPD A 1 205 2 MPD MPD . G 3 MPD A 1 206 3 MPD MPD . H 3 MPD A 1 207 4 MPD MPD . I 3 MPD A 1 208 5 MPD MPD . J 4 BU1 A 1 209 1 BU1 BU1 . K 4 BU1 A 1 210 2 BU1 BU1 . L 4 BU1 A 1 211 3 BU1 BU1 . M 4 BU1 A 1 212 4 BU1 BU1 . N 4 BU1 A 1 213 5 BU1 BU1 . O 4 BU1 A 1 214 6 BU1 BU1 . P 4 BU1 A 1 215 7 BU1 BU1 . Q 4 BU1 A 1 216 8 BU1 BU1 . R 4 BU1 A 1 217 9 BU1 BU1 . S 4 BU1 A 1 218 10 BU1 BU1 . T 4 BU1 A 1 219 11 BU1 BU1 . U 4 BU1 A 1 220 12 BU1 BU1 . V 5 HOH A 1 301 1 HOH HOH . V 5 HOH A 2 302 2 HOH HOH . V 5 HOH A 3 303 3 HOH HOH . V 5 HOH A 4 304 5 HOH HOH . V 5 HOH A 5 305 6 HOH HOH . V 5 HOH A 6 306 7 HOH HOH . V 5 HOH A 7 307 8 HOH HOH . V 5 HOH A 8 308 9 HOH HOH . V 5 HOH A 9 309 10 HOH HOH . V 5 HOH A 10 310 11 HOH HOH . V 5 HOH A 11 311 12 HOH HOH . V 5 HOH A 12 312 13 HOH HOH . V 5 HOH A 13 313 14 HOH HOH . V 5 HOH A 14 314 15 HOH HOH . V 5 HOH A 15 315 16 HOH HOH . V 5 HOH A 16 316 17 HOH HOH . V 5 HOH A 17 317 18 HOH HOH . V 5 HOH A 18 318 19 HOH HOH . V 5 HOH A 19 319 20 HOH HOH . V 5 HOH A 20 320 21 HOH HOH . V 5 HOH A 21 321 22 HOH HOH . V 5 HOH A 22 322 23 HOH HOH . V 5 HOH A 23 323 24 HOH HOH . V 5 HOH A 24 324 25 HOH HOH . V 5 HOH A 25 325 26 HOH HOH . V 5 HOH A 26 326 27 HOH HOH . V 5 HOH A 27 327 28 HOH HOH . V 5 HOH A 28 328 29 HOH HOH . V 5 HOH A 29 329 30 HOH HOH . V 5 HOH A 30 330 31 HOH HOH . V 5 HOH A 31 331 32 HOH HOH . V 5 HOH A 32 332 33 HOH HOH . V 5 HOH A 33 333 34 HOH HOH . V 5 HOH A 34 334 35 HOH HOH . V 5 HOH A 35 335 36 HOH HOH . V 5 HOH A 36 336 37 HOH HOH . V 5 HOH A 37 337 38 HOH HOH . V 5 HOH A 38 338 39 HOH HOH . V 5 HOH A 39 339 40 HOH HOH . V 5 HOH A 40 340 41 HOH HOH . V 5 HOH A 41 341 42 HOH HOH . V 5 HOH A 42 342 43 HOH HOH . V 5 HOH A 43 343 44 HOH HOH . V 5 HOH A 44 344 45 HOH HOH . V 5 HOH A 45 345 46 HOH HOH . V 5 HOH A 46 346 47 HOH HOH . V 5 HOH A 47 347 48 HOH HOH . V 5 HOH A 48 348 49 HOH HOH . V 5 HOH A 49 349 50 HOH HOH . V 5 HOH A 50 350 51 HOH HOH . V 5 HOH A 51 351 52 HOH HOH . V 5 HOH A 52 352 53 HOH HOH . V 5 HOH A 53 353 55 HOH HOH . V 5 HOH A 54 354 57 HOH HOH . V 5 HOH A 55 355 59 HOH HOH . V 5 HOH A 56 356 60 HOH HOH . V 5 HOH A 57 357 61 HOH HOH . V 5 HOH A 58 358 62 HOH HOH . V 5 HOH A 59 359 63 HOH HOH . V 5 HOH A 60 360 64 HOH HOH . V 5 HOH A 61 361 66 HOH HOH . V 5 HOH A 62 362 68 HOH HOH . V 5 HOH A 63 363 69 HOH HOH . V 5 HOH A 64 364 70 HOH HOH . V 5 HOH A 65 365 71 HOH HOH . V 5 HOH A 66 366 73 HOH HOH . V 5 HOH A 67 367 74 HOH HOH . V 5 HOH A 68 368 75 HOH HOH . V 5 HOH A 69 369 76 HOH HOH . V 5 HOH A 70 370 78 HOH HOH . V 5 HOH A 71 371 79 HOH HOH . V 5 HOH A 72 372 83 HOH HOH . V 5 HOH A 73 373 85 HOH HOH . V 5 HOH A 74 374 86 HOH HOH . V 5 HOH A 75 375 88 HOH HOH . V 5 HOH A 76 376 89 HOH HOH . V 5 HOH A 77 377 90 HOH HOH . V 5 HOH A 78 378 91 HOH HOH . V 5 HOH A 79 379 92 HOH HOH . V 5 HOH A 80 380 93 HOH HOH . V 5 HOH A 81 381 94 HOH HOH . V 5 HOH A 82 382 95 HOH HOH . V 5 HOH A 83 383 97 HOH HOH . V 5 HOH A 84 384 98 HOH HOH . V 5 HOH A 85 385 102 HOH HOH . V 5 HOH A 86 386 107 HOH HOH . V 5 HOH A 87 387 139 HOH HOH . V 5 HOH A 88 388 146 HOH HOH . V 5 HOH A 89 389 147 HOH HOH . V 5 HOH A 90 390 148 HOH HOH . V 5 HOH A 91 391 149 HOH HOH . V 5 HOH A 92 392 150 HOH HOH . V 5 HOH A 93 393 151 HOH HOH . V 5 HOH A 94 394 152 HOH HOH . V 5 HOH A 95 395 153 HOH HOH . V 5 HOH A 96 396 154 HOH HOH . V 5 HOH A 97 397 155 HOH HOH . V 5 HOH A 98 398 156 HOH HOH . V 5 HOH A 99 399 157 HOH HOH . V 5 HOH A 100 400 158 HOH HOH . V 5 HOH A 101 401 159 HOH HOH . V 5 HOH A 102 402 160 HOH HOH . V 5 HOH A 103 403 161 HOH HOH . V 5 HOH A 104 404 162 HOH HOH . V 5 HOH A 105 405 163 HOH HOH . V 5 HOH A 106 406 164 HOH HOH . V 5 HOH A 107 407 165 HOH HOH . V 5 HOH A 108 408 166 HOH HOH . V 5 HOH A 109 409 167 HOH HOH . V 5 HOH A 110 410 168 HOH HOH . V 5 HOH A 111 411 169 HOH HOH . V 5 HOH A 112 412 170 HOH HOH . V 5 HOH A 113 413 171 HOH HOH . V 5 HOH A 114 414 172 HOH HOH . V 5 HOH A 115 415 173 HOH HOH . V 5 HOH A 116 416 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 3 3.092 10.486 28.317 1 48.62 ? C1 MPD 207 A 1 HETATM 2 C C2 MPD . . . H 3 3.863 9.278 28.82 1 54.45 ? C2 MPD 207 A 1 HETATM 3 O O2 MPD . . . H 3 4.057 9.438 30.226 1 55.93 ? O2 MPD 207 A 1 HETATM 4 C CM MPD . . . H 3 3.014 8.041 28.552 1 52.92 ? CM MPD 207 A 1 HETATM 5 C C3 MPD . . . H 3 5.261 9.213 28.191 1 54.57 ? C3 MPD 207 A 1 HETATM 6 C C4 MPD . . . H 3 5.796 7.798 27.933 1 56.29 ? C4 MPD 207 A 1 HETATM 7 O O4 MPD . . . H 3 6.792 7.839 26.901 1 61.07 ? O4 MPD 207 A 1 HETATM 8 C C5 MPD . . . H 3 6.419 7.158 29.166 1 55.39 ? C5 MPD 207 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #