data_4HYF
#
_model_server_result.job_id            eDiLnUMet6Zgi8i2sK79gQ 
_model_server_result.datetime_utc      '2024-10-19 16:22:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1201}' 
#
_entry.id    4HYF 
#
_exptl.entry_id    4HYF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              122.125 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4HYF 
_cell.length_a            151.54 
_cell.length_b            151.54 
_cell.length_c            140.52 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,M 1 1 
B,G,H,I,N 2 1 
C,J,K,L,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 E ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 E ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 E ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 E ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc5 B SG CYS 159 B CYS 1081 1_555 H ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc6 B ND1 HIS 162 B HIS 1084 1_555 H ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc7 B SG CYS 167 B CYS 1089 1_555 H ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc8 B SG CYS 170 B CYS 1092 1_555 H ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc9 C SG CYS 159 C CYS 1081 1_555 K ZN ZN . C ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc10 C ND1 HIS 162 C HIS 1084 1_555 K ZN ZN . C ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 C SG CYS 167 C CYS 1089 1_555 K ZN ZN . C ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc12 C SG CYS 170 C CYS 1092 1_555 K ZN ZN . C ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'C6 H6 N2 O' 
_chem_comp.formula_weight    122.125 
_chem_comp.id                NCA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 NCA doub 294 n y 
N1 C6 NCA sing 295 n y 
C2 C3 NCA sing 296 n y 
C2 H2 NCA sing 297 n n 
C3 C4 NCA doub 298 n y 
C3 C7 NCA sing 299 n n 
C4 C5 NCA sing 300 n y 
C4 H4 NCA sing 301 n n 
C5 C6 NCA doub 302 n y 
C5 H5 NCA sing 303 n n 
C6 H6 NCA sing 304 n n 
C7 O7 NCA doub 305 n n 
C7 N7 NCA sing 306 n n 
N7 HN71 NCA sing 307 n n 
N7 HN72 NCA sing 308 n n 
#
_atom_sites.entry_id                     4HYF 
_atom_sites.fract_transf_matrix[1][1]    0.006599 
_atom_sites.fract_transf_matrix[1][2]    0.00381 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NCA A 1 1201 1163 NCA NCA . 
E 3 ZN A 1 1202 3 ZN ZN . 
F 4 1AK A 1 1203 1 1AK 1AK . 
G 2 NCA B 1 1201 1163 NCA NCA . 
H 3 ZN B 1 1202 3 ZN ZN . 
I 4 1AK B 1 1203 1 1AK 1AK . 
J 2 NCA C 1 1201 1163 NCA NCA . 
K 3 ZN C 1 1202 3 ZN ZN . 
L 4 1AK C 1 1203 1 1AK 1AK . 
M 5 HOH A 1 1301 7 HOH HOH . 
M 5 HOH A 2 1302 9 HOH HOH . 
M 5 HOH A 3 1303 10 HOH HOH . 
M 5 HOH A 4 1304 13 HOH HOH . 
M 5 HOH A 5 1305 46 HOH HOH . 
M 5 HOH A 6 1306 48 HOH HOH . 
M 5 HOH A 7 1307 51 HOH HOH . 
M 5 HOH A 8 1308 114 HOH HOH . 
M 5 HOH A 9 1309 119 HOH HOH . 
M 5 HOH A 10 1310 142 HOH HOH . 
M 5 HOH A 11 1311 175 HOH HOH . 
M 5 HOH A 12 1312 177 HOH HOH . 
M 5 HOH A 13 1313 189 HOH HOH . 
N 5 HOH B 1 1301 8 HOH HOH . 
N 5 HOH B 2 1302 11 HOH HOH . 
N 5 HOH B 3 1303 12 HOH HOH . 
N 5 HOH B 4 1304 14 HOH HOH . 
N 5 HOH B 5 1305 19 HOH HOH . 
N 5 HOH B 6 1306 39 HOH HOH . 
N 5 HOH B 7 1307 41 HOH HOH . 
N 5 HOH B 8 1308 74 HOH HOH . 
N 5 HOH B 9 1309 75 HOH HOH . 
N 5 HOH B 10 1310 78 HOH HOH . 
N 5 HOH B 11 1311 162 HOH HOH . 
N 5 HOH B 12 1312 196 HOH HOH . 
N 5 HOH B 13 1313 197 HOH HOH . 
N 5 HOH B 14 1314 198 HOH HOH . 
N 5 HOH B 15 1315 199 HOH HOH . 
O 5 HOH C 1 1301 17 HOH HOH . 
O 5 HOH C 2 1302 28 HOH HOH . 
O 5 HOH C 3 1303 76 HOH HOH . 
O 5 HOH C 4 1304 145 HOH HOH . 
O 5 HOH C 5 1305 195 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NCA . . . G 2 -43.313 77.585 23.151 1 138.67 ? N1 NCA 1201 B 1 
HETATM 2 C C2 NCA . . . G 2 -43.993 76.429 23.306 1 141.89 ? C2 NCA 1201 B 1 
HETATM 3 C C3 NCA . . . G 2 -44.562 76.039 24.519 1 139.33 ? C3 NCA 1201 B 1 
HETATM 4 C C4 NCA . . . G 2 -44.428 76.867 25.631 1 140.68 ? C4 NCA 1201 B 1 
HETATM 5 C C5 NCA . . . G 2 -43.729 78.06 25.48 1 140.16 ? C5 NCA 1201 B 1 
HETATM 6 C C6 NCA . . . G 2 -43.189 78.383 24.233 1 137.35 ? C6 NCA 1201 B 1 
HETATM 7 C C7 NCA . . . G 2 -45.305 74.764 24.672 1 130.42 ? C7 NCA 1201 B 1 
HETATM 8 O O7 NCA . . . G 2 -46.191 74.597 25.508 1 125.24 ? O7 NCA 1201 B 1 
HETATM 9 N N7 NCA . . . G 2 -44.957 73.749 23.817 1 128.26 ? N7 NCA 1201 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
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