data_4HYJ # _model_server_result.job_id 3yKTJ41CWf6ZV7Wjs62pSg _model_server_result.datetime_utc '2024-10-11 01:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":301}' # _entry.id 4HYJ # _exptl.entry_id 4HYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HYJ _cell.length_a 96.099 _cell.length_b 96.099 _cell.length_c 124.38 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,IA 1 1 B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 225 A LYS 225 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 B NZ LYS 225 B LYS 225 1_555 P C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 338 n n C1 C6 RET sing 339 n n C1 C16 RET sing 340 n n C1 C17 RET sing 341 n n C2 C3 RET sing 342 n n C2 H21 RET sing 343 n n C2 H22 RET sing 344 n n C3 C4 RET sing 345 n n C3 H31 RET sing 346 n n C3 H32 RET sing 347 n n C4 C5 RET sing 348 n n C4 H41 RET sing 349 n n C4 H42 RET sing 350 n n C5 C6 RET doub 351 n n C5 C18 RET sing 352 n n C6 C7 RET sing 353 n n C7 C8 RET doub 354 e n C7 H7 RET sing 355 n n C8 C9 RET sing 356 n n C8 H8 RET sing 357 n n C9 C10 RET doub 358 e n C9 C19 RET sing 359 n n C10 C11 RET sing 360 n n C10 H10 RET sing 361 n n C11 C12 RET doub 362 e n C11 H11 RET sing 363 n n C12 C13 RET sing 364 n n C12 H12 RET sing 365 n n C13 C14 RET doub 366 e n C13 C20 RET sing 367 n n C14 C15 RET sing 368 n n C14 H14 RET sing 369 n n C15 O1 RET doub 370 n n C15 H15 RET sing 371 n n C16 H161 RET sing 372 n n C16 H162 RET sing 373 n n C16 H163 RET sing 374 n n C17 H171 RET sing 375 n n C17 H172 RET sing 376 n n C17 H173 RET sing 377 n n C18 H181 RET sing 378 n n C18 H182 RET sing 379 n n C18 H183 RET sing 380 n n C19 H191 RET sing 381 n n C19 H192 RET sing 382 n n C19 H193 RET sing 383 n n C20 H201 RET sing 384 n n C20 H202 RET sing 385 n n C20 H203 RET sing 386 n n # _atom_sites.entry_id 4HYJ _atom_sites.fract_transf_matrix[1][1] 0.010406 _atom_sites.fract_transf_matrix[1][2] 0.006008 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 1225 RET RET . D 3 LFA A 1 302 2 LFA LFA . E 3 LFA A 1 303 9 LFA LFA . F 3 LFA A 1 304 22 LFA LFA . G 3 LFA A 1 305 23 LFA LFA . H 3 LFA A 1 306 24 LFA LFA . I 3 LFA A 1 307 25 LFA LFA . J 3 LFA A 1 308 26 LFA LFA . K 3 LFA A 1 309 30 LFA LFA . L 3 LFA A 1 310 32 LFA LFA . M 3 LFA A 1 311 35 LFA LFA . N 3 LFA A 1 312 38 LFA LFA . O 3 LFA A 1 313 40 LFA LFA . P 2 RET B 1 301 1225 RET RET . Q 3 LFA B 1 302 3 LFA LFA . R 3 LFA B 1 303 11 LFA LFA . S 3 LFA B 1 304 12 LFA LFA . T 3 LFA B 1 305 13 LFA LFA . U 3 LFA B 1 306 17 LFA LFA . V 3 LFA B 1 307 18 LFA LFA . W 3 LFA B 1 308 19 LFA LFA . X 3 LFA B 1 309 20 LFA LFA . Y 3 LFA B 1 310 21 LFA LFA . Z 3 LFA B 1 311 27 LFA LFA . AA 3 LFA B 1 312 28 LFA LFA . BA 3 LFA B 1 313 29 LFA LFA . CA 3 LFA B 1 314 31 LFA LFA . DA 3 LFA B 1 315 33 LFA LFA . EA 3 LFA B 1 316 34 LFA LFA . FA 3 LFA B 1 317 36 LFA LFA . GA 3 LFA B 1 318 37 LFA LFA . HA 3 LFA B 1 319 39 LFA LFA . IA 4 HOH A 1 402 402 HOH HOH . IA 4 HOH A 2 403 403 HOH HOH . IA 4 HOH A 3 404 404 HOH HOH . IA 4 HOH A 4 405 405 HOH HOH . IA 4 HOH A 5 406 406 HOH HOH . IA 4 HOH A 6 407 407 HOH HOH . IA 4 HOH A 7 501 501 HOH HOH . IA 4 HOH A 8 502 502 HOH HOH . IA 4 HOH A 9 503 503 HOH HOH . IA 4 HOH A 10 511 511 HOH HOH . IA 4 HOH A 11 512 512 HOH HOH . IA 4 HOH A 12 513 513 HOH HOH . JA 4 HOH B 1 402 402 HOH HOH . JA 4 HOH B 2 403 403 HOH HOH . JA 4 HOH B 3 406 406 HOH HOH . JA 4 HOH B 4 407 407 HOH HOH . JA 4 HOH B 5 501 501 HOH HOH . JA 4 HOH B 6 511 511 HOH HOH . JA 4 HOH B 7 512 512 HOH HOH . JA 4 HOH B 8 513 513 HOH HOH . JA 4 HOH B 9 514 514 HOH HOH . JA 4 HOH B 10 515 515 HOH HOH . JA 4 HOH B 11 516 516 HOH HOH . JA 4 HOH B 12 517 517 HOH HOH . JA 4 HOH B 13 518 518 HOH HOH . JA 4 HOH B 14 519 519 HOH HOH . JA 4 HOH B 15 520 520 HOH HOH . JA 4 HOH B 16 521 521 HOH HOH . JA 4 HOH B 17 522 522 HOH HOH . JA 4 HOH B 18 523 523 HOH HOH . JA 4 HOH B 19 524 524 HOH HOH . JA 4 HOH B 20 525 525 HOH HOH . JA 4 HOH B 21 526 526 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . P 2 -38.03 -48.649 -28.356 1 26.51 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . P 2 -39.113 -48.409 -27.315 1 21.78 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . P 2 -39.988 -47.362 -27.98 1 21.17 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . P 2 -40.651 -47.944 -29.228 1 21.85 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . P 2 -39.748 -48.838 -30.076 1 27.46 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . P 2 -38.52 -49.236 -29.685 1 21.98 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . P 2 -37.74 -50.089 -30.628 1 20.42 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . P 2 -36.4 -50.134 -30.691 1 21.52 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . P 2 -35.615 -50.93 -31.659 1 19.13 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . P 2 -34.352 -51.264 -31.359 1 16.33 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . P 2 -33.486 -51.993 -32.293 1 19.19 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . P 2 -32.256 -52.3 -31.87 1 20.03 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . P 2 -31.268 -52.971 -32.729 1 20.14 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . P 2 -30.02 -53.097 -32.245 1 20.81 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . P 2 -28.947 -53.704 -33.023 1 23.86 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . P 2 -36.565 -48.374 -28.029 1 24.75 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . P 2 -37.816 -50.05 -27.742 1 21.21 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . P 2 -40.334 -49.312 -31.385 1 25.07 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . P 2 -36.207 -51.303 -32.99 1 22.54 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . P 2 -31.622 -53.437 -34.114 1 21.33 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #