data_4HYX
#
_model_server_result.job_id            SWgAxMtbqTXSDATuwgXhNQ 
_model_server_result.datetime_utc      '2024-12-21 11:37:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    4HYX 
#
_exptl.entry_id    4HYX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.83 
_cell.angle_gamma         90 
_cell.entry_id            4HYX 
_cell.length_a            45.89 
_cell.length_b            112.92 
_cell.length_c            56.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,T 1 1 
B,K,L,M,N,O,P,Q,R,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 229 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
covale ? covale2 B NZ LYS 229 B LYS 216 1_555 K C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 374 n n 
C1 C6 RET sing 375 n n 
C1 C16 RET sing 376 n n 
C1 C17 RET sing 377 n n 
C2 C3 RET sing 378 n n 
C2 H21 RET sing 379 n n 
C2 H22 RET sing 380 n n 
C3 C4 RET sing 381 n n 
C3 H31 RET sing 382 n n 
C3 H32 RET sing 383 n n 
C4 C5 RET sing 384 n n 
C4 H41 RET sing 385 n n 
C4 H42 RET sing 386 n n 
C5 C6 RET doub 387 n n 
C5 C18 RET sing 388 n n 
C6 C7 RET sing 389 n n 
C7 C8 RET doub 390 e n 
C7 H7 RET sing 391 n n 
C8 C9 RET sing 392 n n 
C8 H8 RET sing 393 n n 
C9 C10 RET doub 394 e n 
C9 C19 RET sing 395 n n 
C10 C11 RET sing 396 n n 
C10 H10 RET sing 397 n n 
C11 C12 RET doub 398 e n 
C11 H11 RET sing 399 n n 
C12 C13 RET sing 400 n n 
C12 H12 RET sing 401 n n 
C13 C14 RET doub 402 e n 
C13 C20 RET sing 403 n n 
C14 C15 RET sing 404 n n 
C14 H14 RET sing 405 n n 
C15 O1 RET doub 406 n n 
C15 H15 RET sing 407 n n 
C16 H161 RET sing 408 n n 
C16 H162 RET sing 409 n n 
C16 H163 RET sing 410 n n 
C17 H171 RET sing 411 n n 
C17 H172 RET sing 412 n n 
C17 H173 RET sing 413 n n 
C18 H181 RET sing 414 n n 
C18 H182 RET sing 415 n n 
C18 H183 RET sing 416 n n 
C19 H191 RET sing 417 n n 
C19 H192 RET sing 418 n n 
C19 H193 RET sing 419 n n 
C20 H201 RET sing 420 n n 
C20 H202 RET sing 421 n n 
C20 H203 RET sing 422 n n 
#
_atom_sites.entry_id                     4HYX 
_atom_sites.fract_transf_matrix[1][1]    0.021791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008856 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RET A 1 301 301 RET RET . 
D 3 OCT A 1 302 302 OCT OCT . 
E 4 D10 A 1 303 303 D10 D10 . 
F 4 D10 A 1 304 304 D10 D10 . 
G 4 D10 A 1 305 305 D10 D10 . 
H 4 D10 A 1 306 306 D10 D10 . 
I 4 D10 A 1 307 307 D10 D10 . 
J 3 OCT A 1 308 308 OCT OCT . 
K 2 RET B 1 301 301 RET RET . 
L 4 D10 B 1 302 302 D10 D10 . 
M 4 D10 B 1 303 303 D10 D10 . 
N 5 HEX B 1 304 304 HEX HEX . 
O 6 C14 B 1 305 305 C14 C14 . 
P 3 OCT B 1 306 306 OCT OCT . 
Q 3 OCT B 1 307 307 OCT OCT . 
R 4 D10 B 1 308 308 D10 D10 . 
S 7 GOL B 1 309 1 GOL GOL . 
T 8 HOH A 1 401 401 HOH HOH . 
T 8 HOH A 2 402 402 HOH HOH . 
T 8 HOH A 3 403 403 HOH HOH . 
T 8 HOH A 4 404 404 HOH HOH . 
T 8 HOH A 5 405 405 HOH HOH . 
T 8 HOH A 6 406 406 HOH HOH . 
T 8 HOH A 7 407 407 HOH HOH . 
T 8 HOH A 8 408 408 HOH HOH . 
T 8 HOH A 9 409 409 HOH HOH . 
T 8 HOH A 10 410 410 HOH HOH . 
T 8 HOH A 11 411 411 HOH HOH . 
T 8 HOH A 12 412 412 HOH HOH . 
T 8 HOH A 13 413 413 HOH HOH . 
T 8 HOH A 14 414 414 HOH HOH . 
T 8 HOH A 15 415 415 HOH HOH . 
T 8 HOH A 16 416 416 HOH HOH . 
T 8 HOH A 17 417 417 HOH HOH . 
T 8 HOH A 18 418 418 HOH HOH . 
T 8 HOH A 19 419 419 HOH HOH . 
T 8 HOH A 20 420 412 HOH HOH . 
T 8 HOH A 21 421 415 HOH HOH . 
T 8 HOH A 22 422 416 HOH HOH . 
U 8 HOH B 1 401 401 HOH HOH . 
U 8 HOH B 2 402 402 HOH HOH . 
U 8 HOH B 3 403 403 HOH HOH . 
U 8 HOH B 4 404 404 HOH HOH . 
U 8 HOH B 5 405 405 HOH HOH . 
U 8 HOH B 6 406 406 HOH HOH . 
U 8 HOH B 7 407 407 HOH HOH . 
U 8 HOH B 8 408 408 HOH HOH . 
U 8 HOH B 9 409 409 HOH HOH . 
U 8 HOH B 10 410 410 HOH HOH . 
U 8 HOH B 11 411 411 HOH HOH . 
U 8 HOH B 12 412 413 HOH HOH . 
U 8 HOH B 13 413 414 HOH HOH . 
U 8 HOH B 14 414 417 HOH HOH . 
U 8 HOH B 15 415 418 HOH HOH . 
U 8 HOH B 16 416 419 HOH HOH . 
U 8 HOH B 17 417 420 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . K 2 1.163 -6.616 -30.834 1 30.13 ? C1 RET 301 B 1 
HETATM 2 C C2 RET . . . K 2 0.374 -7.789 -31.269 1 31.55 ? C2 RET 301 B 1 
HETATM 3 C C3 RET . . . K 2 -0.153 -7.782 -32.679 1 24.22 ? C3 RET 301 B 1 
HETATM 4 C C4 RET . . . K 2 -0.583 -6.435 -33.221 1 26.68 ? C4 RET 301 B 1 
HETATM 5 C C5 RET . . . K 2 0.021 -5.233 -32.643 1 24.22 ? C5 RET 301 B 1 
HETATM 6 C C6 RET . . . K 2 0.873 -5.284 -31.571 1 24.71 ? C6 RET 301 B 1 
HETATM 7 C C7 RET . . . K 2 1.504 -4.042 -31.214 1 27.46 ? C7 RET 301 B 1 
HETATM 8 C C8 RET . . . K 2 2.432 -3.86 -30.297 1 24.89 ? C8 RET 301 B 1 
HETATM 9 C C9 RET . . . K 2 3.011 -2.606 -30.006 1 24.89 ? C9 RET 301 B 1 
HETATM 10 C C10 RET . . . K 2 3.985 -2.684 -29.074 1 24.07 ? C10 RET 301 B 1 
HETATM 11 C C11 RET . . . K 2 4.761 -1.566 -28.592 1 28.51 ? C11 RET 301 B 1 
HETATM 12 C C12 RET . . . K 2 5.7 -1.897 -27.713 1 23.93 ? C12 RET 301 B 1 
HETATM 13 C C13 RET . . . K 2 6.565 -0.956 -27.072 1 27.48 ? C13 RET 301 B 1 
HETATM 14 C C14 RET . . . K 2 7.259 -1.431 -26.053 1 31.73 ? C14 RET 301 B 1 
HETATM 15 C C15 RET . . . K 2 8.047 -0.442 -25.34 1 26.49 ? C15 RET 301 B 1 
HETATM 16 C C16 RET . . . K 2 0.81 -6.489 -29.347 1 29.91 ? C16 RET 301 B 1 
HETATM 17 C C17 RET . . . K 2 2.627 -6.98 -30.988 1 34.6 ? C17 RET 301 B 1 
HETATM 18 C C18 RET . . . K 2 -0.351 -3.99 -33.322 1 20.73 ? C18 RET 301 B 1 
HETATM 19 C C19 RET . . . K 2 2.626 -1.384 -30.698 1 23.37 ? C19 RET 301 B 1 
HETATM 20 C C20 RET . . . K 2 6.594 0.48 -27.254 1 29.21 ? C20 RET 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#