data_4HZF # _model_server_result.job_id -8Ns0OrkvkNrbqSqA3lLUw _model_server_result.datetime_utc '2024-11-28 12:12:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 4HZF # _exptl.entry_id 4HZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.06 _cell.angle_gamma 90 _cell.entry_id 4HZF _cell.length_a 45.5 _cell.length_b 101.85 _cell.length_c 53.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N ? 4 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 4HZF _atom_sites.fract_transf_matrix[1][1] 0.021978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008463 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 679 CMP CMP . D 2 CMP A 1 302 680 CMP CMP . E 3 PO4 A 1 303 1 PO4 PO4 . F 4 GOL A 1 304 3 GOL GOL . G 4 GOL A 1 305 6 GOL GOL . H 4 GOL A 1 306 8 GOL GOL . I 2 CMP B 1 301 679 CMP CMP . J 3 PO4 B 1 302 2 PO4 PO4 . K 4 GOL B 1 303 4 GOL GOL . L 4 GOL B 1 304 5 GOL GOL . M 4 GOL B 1 305 7 GOL GOL . N 5 HOH A 1 401 2 HOH HOH . N 5 HOH A 2 402 3 HOH HOH . N 5 HOH A 3 403 6 HOH HOH . N 5 HOH A 4 404 9 HOH HOH . N 5 HOH A 5 405 11 HOH HOH . N 5 HOH A 6 406 12 HOH HOH . N 5 HOH A 7 407 17 HOH HOH . N 5 HOH A 8 408 18 HOH HOH . N 5 HOH A 9 409 19 HOH HOH . N 5 HOH A 10 410 21 HOH HOH . N 5 HOH A 11 411 22 HOH HOH . N 5 HOH A 12 412 23 HOH HOH . N 5 HOH A 13 413 24 HOH HOH . N 5 HOH A 14 414 26 HOH HOH . N 5 HOH A 15 415 27 HOH HOH . N 5 HOH A 16 416 29 HOH HOH . N 5 HOH A 17 417 31 HOH HOH . N 5 HOH A 18 418 32 HOH HOH . N 5 HOH A 19 419 35 HOH HOH . N 5 HOH A 20 420 36 HOH HOH . N 5 HOH A 21 421 39 HOH HOH . N 5 HOH A 22 422 41 HOH HOH . N 5 HOH A 23 423 44 HOH HOH . N 5 HOH A 24 424 47 HOH HOH . N 5 HOH A 25 425 49 HOH HOH . N 5 HOH A 26 426 50 HOH HOH . N 5 HOH A 27 427 53 HOH HOH . N 5 HOH A 28 428 54 HOH HOH . N 5 HOH A 29 429 56 HOH HOH . N 5 HOH A 30 430 59 HOH HOH . N 5 HOH A 31 431 60 HOH HOH . N 5 HOH A 32 432 61 HOH HOH . N 5 HOH A 33 433 62 HOH HOH . N 5 HOH A 34 434 63 HOH HOH . N 5 HOH A 35 435 64 HOH HOH . N 5 HOH A 36 436 65 HOH HOH . N 5 HOH A 37 437 66 HOH HOH . N 5 HOH A 38 438 67 HOH HOH . N 5 HOH A 39 439 71 HOH HOH . N 5 HOH A 40 440 75 HOH HOH . N 5 HOH A 41 441 77 HOH HOH . N 5 HOH A 42 442 78 HOH HOH . N 5 HOH A 43 443 80 HOH HOH . N 5 HOH A 44 444 81 HOH HOH . N 5 HOH A 45 445 83 HOH HOH . N 5 HOH A 46 446 84 HOH HOH . N 5 HOH A 47 447 87 HOH HOH . N 5 HOH A 48 448 88 HOH HOH . N 5 HOH A 49 449 89 HOH HOH . N 5 HOH A 50 450 90 HOH HOH . N 5 HOH A 51 451 91 HOH HOH . N 5 HOH A 52 452 99 HOH HOH . N 5 HOH A 53 453 100 HOH HOH . N 5 HOH A 54 454 103 HOH HOH . N 5 HOH A 55 455 104 HOH HOH . N 5 HOH A 56 456 113 HOH HOH . N 5 HOH A 57 457 114 HOH HOH . N 5 HOH A 58 458 116 HOH HOH . N 5 HOH A 59 459 119 HOH HOH . N 5 HOH A 60 460 120 HOH HOH . N 5 HOH A 61 461 123 HOH HOH . N 5 HOH A 62 462 124 HOH HOH . N 5 HOH A 63 463 125 HOH HOH . N 5 HOH A 64 464 128 HOH HOH . N 5 HOH A 65 465 129 HOH HOH . N 5 HOH A 66 466 130 HOH HOH . N 5 HOH A 67 467 133 HOH HOH . N 5 HOH A 68 468 134 HOH HOH . N 5 HOH A 69 469 136 HOH HOH . N 5 HOH A 70 470 140 HOH HOH . N 5 HOH A 71 471 142 HOH HOH . N 5 HOH A 72 472 143 HOH HOH . N 5 HOH A 73 473 144 HOH HOH . N 5 HOH A 74 474 145 HOH HOH . N 5 HOH A 75 475 148 HOH HOH . N 5 HOH A 76 476 160 HOH HOH . N 5 HOH A 77 477 161 HOH HOH . N 5 HOH A 78 478 162 HOH HOH . N 5 HOH A 79 479 165 HOH HOH . N 5 HOH A 80 480 166 HOH HOH . N 5 HOH A 81 481 167 HOH HOH . N 5 HOH A 82 482 169 HOH HOH . N 5 HOH A 83 483 171 HOH HOH . N 5 HOH A 84 484 173 HOH HOH . N 5 HOH A 85 485 174 HOH HOH . N 5 HOH A 86 486 176 HOH HOH . N 5 HOH A 87 487 177 HOH HOH . N 5 HOH A 88 488 179 HOH HOH . N 5 HOH A 89 489 182 HOH HOH . N 5 HOH A 90 490 186 HOH HOH . N 5 HOH A 91 491 187 HOH HOH . N 5 HOH A 92 492 188 HOH HOH . N 5 HOH A 93 493 189 HOH HOH . N 5 HOH A 94 494 190 HOH HOH . N 5 HOH A 95 495 191 HOH HOH . N 5 HOH A 96 496 192 HOH HOH . N 5 HOH A 97 497 193 HOH HOH . N 5 HOH A 98 498 194 HOH HOH . N 5 HOH A 99 499 195 HOH HOH . N 5 HOH A 100 500 203 HOH HOH . N 5 HOH A 101 501 204 HOH HOH . N 5 HOH A 102 502 205 HOH HOH . N 5 HOH A 103 503 206 HOH HOH . N 5 HOH A 104 504 207 HOH HOH . N 5 HOH A 105 505 208 HOH HOH . N 5 HOH A 106 506 209 HOH HOH . N 5 HOH A 107 507 210 HOH HOH . N 5 HOH A 108 508 211 HOH HOH . N 5 HOH A 109 509 212 HOH HOH . N 5 HOH A 110 510 213 HOH HOH . N 5 HOH A 111 511 215 HOH HOH . N 5 HOH A 112 512 219 HOH HOH . N 5 HOH A 113 513 221 HOH HOH . N 5 HOH A 114 514 224 HOH HOH . N 5 HOH A 115 515 225 HOH HOH . N 5 HOH A 116 516 226 HOH HOH . N 5 HOH A 117 517 227 HOH HOH . N 5 HOH A 118 518 228 HOH HOH . N 5 HOH A 119 519 230 HOH HOH . N 5 HOH A 120 520 231 HOH HOH . N 5 HOH A 121 521 232 HOH HOH . N 5 HOH A 122 522 235 HOH HOH . N 5 HOH A 123 523 236 HOH HOH . N 5 HOH A 124 524 238 HOH HOH . N 5 HOH A 125 525 240 HOH HOH . N 5 HOH A 126 526 241 HOH HOH . N 5 HOH A 127 527 245 HOH HOH . N 5 HOH A 128 528 248 HOH HOH . N 5 HOH A 129 529 251 HOH HOH . N 5 HOH A 130 530 254 HOH HOH . N 5 HOH A 131 531 255 HOH HOH . N 5 HOH A 132 532 256 HOH HOH . N 5 HOH A 133 533 257 HOH HOH . N 5 HOH A 134 534 259 HOH HOH . N 5 HOH A 135 535 261 HOH HOH . N 5 HOH A 136 536 263 HOH HOH . N 5 HOH A 137 537 264 HOH HOH . N 5 HOH A 138 538 265 HOH HOH . N 5 HOH A 139 539 269 HOH HOH . N 5 HOH A 140 540 273 HOH HOH . N 5 HOH A 141 541 274 HOH HOH . N 5 HOH A 142 542 284 HOH HOH . N 5 HOH A 143 543 285 HOH HOH . N 5 HOH A 144 544 286 HOH HOH . N 5 HOH A 145 545 288 HOH HOH . N 5 HOH A 146 546 290 HOH HOH . N 5 HOH A 147 547 291 HOH HOH . O 5 HOH B 1 401 1 HOH HOH . O 5 HOH B 2 402 4 HOH HOH . O 5 HOH B 3 403 5 HOH HOH . O 5 HOH B 4 404 7 HOH HOH . O 5 HOH B 5 405 8 HOH HOH . O 5 HOH B 6 406 10 HOH HOH . O 5 HOH B 7 407 13 HOH HOH . O 5 HOH B 8 408 14 HOH HOH . O 5 HOH B 9 409 15 HOH HOH . O 5 HOH B 10 410 16 HOH HOH . O 5 HOH B 11 411 20 HOH HOH . O 5 HOH B 12 412 25 HOH HOH . O 5 HOH B 13 413 28 HOH HOH . O 5 HOH B 14 414 30 HOH HOH . O 5 HOH B 15 415 33 HOH HOH . O 5 HOH B 16 416 34 HOH HOH . O 5 HOH B 17 417 37 HOH HOH . O 5 HOH B 18 418 38 HOH HOH . O 5 HOH B 19 419 40 HOH HOH . O 5 HOH B 20 420 42 HOH HOH . O 5 HOH B 21 421 43 HOH HOH . O 5 HOH B 22 422 45 HOH HOH . O 5 HOH B 23 423 46 HOH HOH . O 5 HOH B 24 424 48 HOH HOH . O 5 HOH B 25 425 51 HOH HOH . O 5 HOH B 26 426 52 HOH HOH . O 5 HOH B 27 427 55 HOH HOH . O 5 HOH B 28 428 57 HOH HOH . O 5 HOH B 29 429 58 HOH HOH . O 5 HOH B 30 430 68 HOH HOH . O 5 HOH B 31 431 69 HOH HOH . O 5 HOH B 32 432 70 HOH HOH . O 5 HOH B 33 433 72 HOH HOH . O 5 HOH B 34 434 73 HOH HOH . O 5 HOH B 35 435 74 HOH HOH . O 5 HOH B 36 436 76 HOH HOH . O 5 HOH B 37 437 79 HOH HOH . O 5 HOH B 38 438 82 HOH HOH . O 5 HOH B 39 439 85 HOH HOH . O 5 HOH B 40 440 86 HOH HOH . O 5 HOH B 41 441 92 HOH HOH . O 5 HOH B 42 442 93 HOH HOH . O 5 HOH B 43 443 94 HOH HOH . O 5 HOH B 44 444 95 HOH HOH . O 5 HOH B 45 445 96 HOH HOH . O 5 HOH B 46 446 97 HOH HOH . O 5 HOH B 47 447 98 HOH HOH . O 5 HOH B 48 448 101 HOH HOH . O 5 HOH B 49 449 102 HOH HOH . O 5 HOH B 50 450 105 HOH HOH . O 5 HOH B 51 451 106 HOH HOH . O 5 HOH B 52 452 107 HOH HOH . O 5 HOH B 53 453 108 HOH HOH . O 5 HOH B 54 454 109 HOH HOH . O 5 HOH B 55 455 110 HOH HOH . O 5 HOH B 56 456 111 HOH HOH . O 5 HOH B 57 457 112 HOH HOH . O 5 HOH B 58 458 115 HOH HOH . O 5 HOH B 59 459 117 HOH HOH . O 5 HOH B 60 460 118 HOH HOH . O 5 HOH B 61 461 121 HOH HOH . O 5 HOH B 62 462 122 HOH HOH . O 5 HOH B 63 463 126 HOH HOH . O 5 HOH B 64 464 127 HOH HOH . O 5 HOH B 65 465 131 HOH HOH . O 5 HOH B 66 466 132 HOH HOH . O 5 HOH B 67 467 135 HOH HOH . O 5 HOH B 68 468 137 HOH HOH . O 5 HOH B 69 469 138 HOH HOH . O 5 HOH B 70 470 139 HOH HOH . O 5 HOH B 71 471 141 HOH HOH . O 5 HOH B 72 472 146 HOH HOH . O 5 HOH B 73 473 147 HOH HOH . O 5 HOH B 74 474 149 HOH HOH . O 5 HOH B 75 475 150 HOH HOH . O 5 HOH B 76 476 151 HOH HOH . O 5 HOH B 77 477 152 HOH HOH . O 5 HOH B 78 478 153 HOH HOH . O 5 HOH B 79 479 154 HOH HOH . O 5 HOH B 80 480 155 HOH HOH . O 5 HOH B 81 481 156 HOH HOH . O 5 HOH B 82 482 157 HOH HOH . O 5 HOH B 83 483 158 HOH HOH . O 5 HOH B 84 484 159 HOH HOH . O 5 HOH B 85 485 163 HOH HOH . O 5 HOH B 86 486 164 HOH HOH . O 5 HOH B 87 487 168 HOH HOH . O 5 HOH B 88 488 170 HOH HOH . O 5 HOH B 89 489 172 HOH HOH . O 5 HOH B 90 490 175 HOH HOH . O 5 HOH B 91 491 178 HOH HOH . O 5 HOH B 92 492 180 HOH HOH . O 5 HOH B 93 493 181 HOH HOH . O 5 HOH B 94 494 183 HOH HOH . O 5 HOH B 95 495 184 HOH HOH . O 5 HOH B 96 496 185 HOH HOH . O 5 HOH B 97 497 196 HOH HOH . O 5 HOH B 98 498 197 HOH HOH . O 5 HOH B 99 499 198 HOH HOH . O 5 HOH B 100 500 199 HOH HOH . O 5 HOH B 101 501 200 HOH HOH . O 5 HOH B 102 502 201 HOH HOH . O 5 HOH B 103 503 202 HOH HOH . O 5 HOH B 104 504 214 HOH HOH . O 5 HOH B 105 505 216 HOH HOH . O 5 HOH B 106 506 217 HOH HOH . O 5 HOH B 107 507 218 HOH HOH . O 5 HOH B 108 508 220 HOH HOH . O 5 HOH B 109 509 222 HOH HOH . O 5 HOH B 110 510 223 HOH HOH . O 5 HOH B 111 511 229 HOH HOH . O 5 HOH B 112 512 233 HOH HOH . O 5 HOH B 113 513 234 HOH HOH . O 5 HOH B 114 514 237 HOH HOH . O 5 HOH B 115 515 239 HOH HOH . O 5 HOH B 116 516 242 HOH HOH . O 5 HOH B 117 517 243 HOH HOH . O 5 HOH B 118 518 244 HOH HOH . O 5 HOH B 119 519 246 HOH HOH . O 5 HOH B 120 520 247 HOH HOH . O 5 HOH B 121 521 249 HOH HOH . O 5 HOH B 122 522 250 HOH HOH . O 5 HOH B 123 523 252 HOH HOH . O 5 HOH B 124 524 253 HOH HOH . O 5 HOH B 125 525 258 HOH HOH . O 5 HOH B 126 526 260 HOH HOH . O 5 HOH B 127 527 262 HOH HOH . O 5 HOH B 128 528 266 HOH HOH . O 5 HOH B 129 529 267 HOH HOH . O 5 HOH B 130 530 268 HOH HOH . O 5 HOH B 131 531 270 HOH HOH . O 5 HOH B 132 532 271 HOH HOH . O 5 HOH B 133 533 272 HOH HOH . O 5 HOH B 134 534 275 HOH HOH . O 5 HOH B 135 535 276 HOH HOH . O 5 HOH B 136 536 277 HOH HOH . O 5 HOH B 137 537 278 HOH HOH . O 5 HOH B 138 538 279 HOH HOH . O 5 HOH B 139 539 280 HOH HOH . O 5 HOH B 140 540 281 HOH HOH . O 5 HOH B 141 541 282 HOH HOH . O 5 HOH B 142 542 283 HOH HOH . O 5 HOH B 143 543 287 HOH HOH . O 5 HOH B 144 544 289 HOH HOH . O 5 HOH B 145 545 292 HOH HOH . O 5 HOH B 146 546 293 HOH HOH . O 5 HOH B 147 547 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 -9.432 -22.088 -1.765 1 60.69 ? C1 GOL 304 B 1 HETATM 2 O O1 GOL . . . L 4 -8.915 -20.834 -2.226 1 55.34 ? O1 GOL 304 B 1 HETATM 3 C C2 GOL . . . L 4 -10.307 -21.808 -0.557 1 60.15 ? C2 GOL 304 B 1 HETATM 4 O O2 GOL . . . L 4 -11.03 -20.599 -0.82 1 58.92 ? O2 GOL 304 B 1 HETATM 5 C C3 GOL . . . L 4 -11.27 -22.97 -0.353 1 56.95 ? C3 GOL 304 B 1 HETATM 6 O O3 GOL . . . L 4 -12.613 -22.485 -0.443 1 70.21 ? O3 GOL 304 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #