data_4HZN # _model_server_result.job_id 9JhekU4CHEGSDUQrcZu7vg _model_server_result.datetime_utc '2024-11-08 13:51:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4HZN # _exptl.entry_id 4HZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HZN _cell.length_a 60.165 _cell.length_b 60.165 _cell.length_c 311.193 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 51.8655 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 36 A GLY 22 1_555 A N MSE 37 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 37 A MSE 23 1_555 A N CYS 38 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SER 242 A SER 228 1_555 A N MSE 243 A MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 243 A MSE 229 1_555 A N VAL 244 A VAL 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C GLN 271 A GLN 257 1_555 A N MSE 272 A MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 272 A MSE 258 1_555 A N CYS 273 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4HZN _atom_sites.fract_transf_matrix[1][1] 0.016621 _atom_sites.fract_transf_matrix[1][2] 0.009596 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 1 TRS TRS . C 3 GOL A 1 402 1 GOL GOL . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 2 SO4 SO4 . F 4 SO4 A 1 405 3 SO4 SO4 . G 4 SO4 A 1 406 4 SO4 SO4 . H 4 SO4 A 1 407 5 SO4 SO4 . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 2 HOH HOH . I 5 HOH A 3 503 3 HOH HOH . I 5 HOH A 4 504 4 HOH HOH . I 5 HOH A 5 505 5 HOH HOH . I 5 HOH A 6 506 6 HOH HOH . I 5 HOH A 7 507 7 HOH HOH . I 5 HOH A 8 508 8 HOH HOH . I 5 HOH A 9 509 9 HOH HOH . I 5 HOH A 10 510 10 HOH HOH . I 5 HOH A 11 511 11 HOH HOH . I 5 HOH A 12 512 12 HOH HOH . I 5 HOH A 13 513 13 HOH HOH . I 5 HOH A 14 514 14 HOH HOH . I 5 HOH A 15 515 15 HOH HOH . I 5 HOH A 16 516 16 HOH HOH . I 5 HOH A 17 517 17 HOH HOH . I 5 HOH A 18 518 18 HOH HOH . I 5 HOH A 19 519 19 HOH HOH . I 5 HOH A 20 520 20 HOH HOH . I 5 HOH A 21 521 21 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 23 HOH HOH . I 5 HOH A 24 524 24 HOH HOH . I 5 HOH A 25 525 25 HOH HOH . I 5 HOH A 26 526 26 HOH HOH . I 5 HOH A 27 527 27 HOH HOH . I 5 HOH A 28 528 28 HOH HOH . I 5 HOH A 29 529 29 HOH HOH . I 5 HOH A 30 530 30 HOH HOH . I 5 HOH A 31 531 31 HOH HOH . I 5 HOH A 32 532 32 HOH HOH . I 5 HOH A 33 533 33 HOH HOH . I 5 HOH A 34 534 34 HOH HOH . I 5 HOH A 35 535 35 HOH HOH . I 5 HOH A 36 536 36 HOH HOH . I 5 HOH A 37 537 37 HOH HOH . I 5 HOH A 38 538 38 HOH HOH . I 5 HOH A 39 539 39 HOH HOH . I 5 HOH A 40 540 40 HOH HOH . I 5 HOH A 41 541 41 HOH HOH . I 5 HOH A 42 542 42 HOH HOH . I 5 HOH A 43 543 43 HOH HOH . I 5 HOH A 44 544 44 HOH HOH . I 5 HOH A 45 545 45 HOH HOH . I 5 HOH A 46 546 46 HOH HOH . I 5 HOH A 47 547 47 HOH HOH . I 5 HOH A 48 548 48 HOH HOH . I 5 HOH A 49 549 49 HOH HOH . I 5 HOH A 50 550 50 HOH HOH . I 5 HOH A 51 551 51 HOH HOH . I 5 HOH A 52 552 52 HOH HOH . I 5 HOH A 53 553 53 HOH HOH . I 5 HOH A 54 554 54 HOH HOH . I 5 HOH A 55 555 55 HOH HOH . I 5 HOH A 56 556 56 HOH HOH . I 5 HOH A 57 557 57 HOH HOH . I 5 HOH A 58 558 58 HOH HOH . I 5 HOH A 59 559 59 HOH HOH . I 5 HOH A 60 560 60 HOH HOH . I 5 HOH A 61 561 61 HOH HOH . I 5 HOH A 62 562 62 HOH HOH . I 5 HOH A 63 563 63 HOH HOH . I 5 HOH A 64 564 64 HOH HOH . I 5 HOH A 65 565 65 HOH HOH . I 5 HOH A 66 566 66 HOH HOH . I 5 HOH A 67 567 68 HOH HOH . I 5 HOH A 68 568 69 HOH HOH . I 5 HOH A 69 569 70 HOH HOH . I 5 HOH A 70 570 71 HOH HOH . I 5 HOH A 71 571 72 HOH HOH . I 5 HOH A 72 572 73 HOH HOH . I 5 HOH A 73 573 74 HOH HOH . I 5 HOH A 74 574 75 HOH HOH . I 5 HOH A 75 575 76 HOH HOH . I 5 HOH A 76 576 77 HOH HOH . I 5 HOH A 77 577 78 HOH HOH . I 5 HOH A 78 578 79 HOH HOH . I 5 HOH A 79 579 80 HOH HOH . I 5 HOH A 80 580 81 HOH HOH . I 5 HOH A 81 581 82 HOH HOH . I 5 HOH A 82 582 83 HOH HOH . I 5 HOH A 83 583 84 HOH HOH . I 5 HOH A 84 584 85 HOH HOH . I 5 HOH A 85 585 86 HOH HOH . I 5 HOH A 86 586 87 HOH HOH . I 5 HOH A 87 587 88 HOH HOH . I 5 HOH A 88 588 89 HOH HOH . I 5 HOH A 89 589 90 HOH HOH . I 5 HOH A 90 590 91 HOH HOH . I 5 HOH A 91 591 92 HOH HOH . I 5 HOH A 92 592 93 HOH HOH . I 5 HOH A 93 593 94 HOH HOH . I 5 HOH A 94 594 95 HOH HOH . I 5 HOH A 95 595 96 HOH HOH . I 5 HOH A 96 596 97 HOH HOH . I 5 HOH A 97 597 98 HOH HOH . I 5 HOH A 98 598 99 HOH HOH . I 5 HOH A 99 599 100 HOH HOH . I 5 HOH A 100 600 101 HOH HOH . I 5 HOH A 101 601 102 HOH HOH . I 5 HOH A 102 602 103 HOH HOH . I 5 HOH A 103 603 104 HOH HOH . I 5 HOH A 104 604 105 HOH HOH . I 5 HOH A 105 605 106 HOH HOH . I 5 HOH A 106 606 107 HOH HOH . I 5 HOH A 107 607 108 HOH HOH . I 5 HOH A 108 608 109 HOH HOH . I 5 HOH A 109 609 110 HOH HOH . I 5 HOH A 110 610 111 HOH HOH . I 5 HOH A 111 611 112 HOH HOH . I 5 HOH A 112 612 113 HOH HOH . I 5 HOH A 113 613 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 34.353 16.206 10.198 1 22.66 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 35.167 15.138 9.746 1 20.71 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 32.886 15.774 10.292 1 20.73 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 32.518 15.269 9.031 1 20.59 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 32.712 14.71 11.375 1 20.49 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 31.374 14.265 11.48 1 18.06 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #