data_4I01 # _model_server_result.job_id vxnojoDMxz2Pt6a4_r2VXQ _model_server_result.datetime_utc '2024-11-14 17:51:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4I01 # _exptl.entry_id 4I01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I01 _cell.length_a 45.38 _cell.length_b 99.79 _cell.length_c 102.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 4I01 _atom_sites.fract_transf_matrix[1][1] 0.022036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 679 CMP CMP . D 2 CMP A 1 302 680 CMP CMP . E 2 CMP B 1 301 679 CMP CMP . F 3 HOH A 1 401 1 HOH HOH . F 3 HOH A 2 402 2 HOH HOH . F 3 HOH A 3 403 3 HOH HOH . F 3 HOH A 4 404 6 HOH HOH . F 3 HOH A 5 405 8 HOH HOH . F 3 HOH A 6 406 12 HOH HOH . F 3 HOH A 7 407 14 HOH HOH . F 3 HOH A 8 408 21 HOH HOH . F 3 HOH A 9 409 22 HOH HOH . F 3 HOH A 10 410 23 HOH HOH . F 3 HOH A 11 411 25 HOH HOH . F 3 HOH A 12 412 28 HOH HOH . F 3 HOH A 13 413 29 HOH HOH . F 3 HOH A 14 414 31 HOH HOH . F 3 HOH A 15 415 32 HOH HOH . F 3 HOH A 16 416 33 HOH HOH . F 3 HOH A 17 417 34 HOH HOH . F 3 HOH A 18 418 35 HOH HOH . F 3 HOH A 19 419 36 HOH HOH . F 3 HOH A 20 420 37 HOH HOH . F 3 HOH A 21 421 38 HOH HOH . F 3 HOH A 22 422 39 HOH HOH . F 3 HOH A 23 423 40 HOH HOH . F 3 HOH A 24 424 41 HOH HOH . F 3 HOH A 25 425 42 HOH HOH . F 3 HOH A 26 426 45 HOH HOH . F 3 HOH A 27 427 47 HOH HOH . F 3 HOH A 28 428 54 HOH HOH . F 3 HOH A 29 429 55 HOH HOH . F 3 HOH A 30 430 56 HOH HOH . F 3 HOH A 31 431 57 HOH HOH . F 3 HOH A 32 432 58 HOH HOH . F 3 HOH A 33 433 59 HOH HOH . F 3 HOH A 34 434 60 HOH HOH . F 3 HOH A 35 435 61 HOH HOH . F 3 HOH A 36 436 62 HOH HOH . F 3 HOH A 37 437 63 HOH HOH . F 3 HOH A 38 438 64 HOH HOH . F 3 HOH A 39 439 65 HOH HOH . F 3 HOH A 40 440 66 HOH HOH . F 3 HOH A 41 441 67 HOH HOH . F 3 HOH A 42 442 68 HOH HOH . F 3 HOH A 43 443 69 HOH HOH . F 3 HOH A 44 444 70 HOH HOH . F 3 HOH A 45 445 71 HOH HOH . F 3 HOH A 46 446 72 HOH HOH . F 3 HOH A 47 447 74 HOH HOH . F 3 HOH A 48 448 78 HOH HOH . F 3 HOH A 49 449 83 HOH HOH . G 3 HOH B 1 401 4 HOH HOH . G 3 HOH B 2 402 5 HOH HOH . G 3 HOH B 3 403 7 HOH HOH . G 3 HOH B 4 404 9 HOH HOH . G 3 HOH B 5 405 10 HOH HOH . G 3 HOH B 6 406 11 HOH HOH . G 3 HOH B 7 407 13 HOH HOH . G 3 HOH B 8 408 15 HOH HOH . G 3 HOH B 9 409 16 HOH HOH . G 3 HOH B 10 410 17 HOH HOH . G 3 HOH B 11 411 18 HOH HOH . G 3 HOH B 12 412 19 HOH HOH . G 3 HOH B 13 413 20 HOH HOH . G 3 HOH B 14 414 24 HOH HOH . G 3 HOH B 15 415 26 HOH HOH . G 3 HOH B 16 416 27 HOH HOH . G 3 HOH B 17 417 30 HOH HOH . G 3 HOH B 18 418 43 HOH HOH . G 3 HOH B 19 419 44 HOH HOH . G 3 HOH B 20 420 46 HOH HOH . G 3 HOH B 21 421 48 HOH HOH . G 3 HOH B 22 422 49 HOH HOH . G 3 HOH B 23 423 50 HOH HOH . G 3 HOH B 24 424 51 HOH HOH . G 3 HOH B 25 425 52 HOH HOH . G 3 HOH B 26 426 53 HOH HOH . G 3 HOH B 27 427 73 HOH HOH . G 3 HOH B 28 428 75 HOH HOH . G 3 HOH B 29 429 76 HOH HOH . G 3 HOH B 30 430 77 HOH HOH . G 3 HOH B 31 431 79 HOH HOH . G 3 HOH B 32 432 80 HOH HOH . G 3 HOH B 33 433 81 HOH HOH . G 3 HOH B 34 434 82 HOH HOH . G 3 HOH B 35 435 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . E 2 -4.431 -4.425 -7.182 1 33.22 ? P CMP 301 B 1 HETATM 2 O O1P CMP . . . E 2 -3.461 -3.443 -7.773 1 36.17 ? O1P CMP 301 B 1 HETATM 3 O O2P CMP . . . E 2 -5.476 -3.95 -6.238 1 36.2 ? O2P CMP 301 B 1 HETATM 4 O O5' CMP . . . E 2 -5.127 -5.157 -8.439 1 32.16 ? O5' CMP 301 B 1 HETATM 5 C C5' CMP . . . E 2 -4.267 -5.806 -9.364 1 31.14 ? C5' CMP 301 B 1 HETATM 6 C C4' CMP . . . E 2 -3.554 -6.85 -8.527 1 34.76 ? C4' CMP 301 B 1 HETATM 7 O O4' CMP . . . E 2 -2.656 -7.695 -9.24 1 39.89 ? O4' CMP 301 B 1 HETATM 8 C C3' CMP . . . E 2 -2.674 -6.218 -7.487 1 34.21 ? C3' CMP 301 B 1 HETATM 9 O O3' CMP . . . E 2 -3.581 -5.639 -6.559 1 35.44 ? O3' CMP 301 B 1 HETATM 10 C C2' CMP . . . E 2 -1.769 -7.363 -7.055 1 36.13 ? C2' CMP 301 B 1 HETATM 11 O O2' CMP . . . E 2 -2.466 -8.343 -6.268 1 38.62 ? O2' CMP 301 B 1 HETATM 12 C C1' CMP . . . E 2 -1.542 -8.019 -8.399 1 36.13 ? C1' CMP 301 B 1 HETATM 13 N N9 CMP . . . E 2 -0.234 -7.565 -8.96 1 39.05 ? N9 CMP 301 B 1 HETATM 14 C C8 CMP . . . E 2 0.13 -6.321 -9.416 1 34 ? C8 CMP 301 B 1 HETATM 15 N N7 CMP . . . E 2 1.424 -6.349 -9.823 1 34.42 ? N7 CMP 301 B 1 HETATM 16 C C5 CMP . . . E 2 1.884 -7.603 -9.613 1 33.68 ? C5 CMP 301 B 1 HETATM 17 C C6 CMP . . . E 2 3.148 -8.331 -9.826 1 34.24 ? C6 CMP 301 B 1 HETATM 18 N N6 CMP . . . E 2 4.204 -7.652 -10.319 1 30.29 ? N6 CMP 301 B 1 HETATM 19 N N1 CMP . . . E 2 3.186 -9.67 -9.523 1 40.47 ? N1 CMP 301 B 1 HETATM 20 C C2 CMP . . . E 2 2.148 -10.362 -8.978 1 35.54 ? C2 CMP 301 B 1 HETATM 21 N N3 CMP . . . E 2 0.968 -9.734 -8.769 1 37.32 ? N3 CMP 301 B 1 HETATM 22 C C4 CMP . . . E 2 0.794 -8.41 -9.061 1 35.57 ? C4 CMP 301 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #