data_4I03 # _model_server_result.job_id IS_69Mzzuri72N6vUkNfzQ _model_server_result.datetime_utc '2024-11-22 07:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 4I03 # _exptl.entry_id 4I03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.67 _cell.angle_gamma 90 _cell.entry_id 4I03 _cell.length_a 51.79 _cell.length_b 60.1 _cell.length_c 54.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 20 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A OD1 ASP 20 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 A O ASP 54 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 A NE2 HIS 64 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 A OD2 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc6 A OD1 ASP 71 A ASP 175 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 A O GLY 72 A GLY 176 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc8 A O GLY 74 A GLY 178 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc9 A O ILE 76 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc10 A O GLY 86 A GLY 190 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 A O GLY 88 A GLY 192 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc12 A OD1 ASP 90 A ASP 194 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc13 A ND1 HIS 92 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc14 A OD2 ASP 94 A ASP 198 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc15 A O GLU 95 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc16 A OE2 GLU 95 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc17 A O GLU 97 A GLU 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc18 A OE2 GLU 97 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc19 A NE2 HIS 118 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc20 A NE2 HIS 124 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc21 B ZN ZN . A ZN 301 1_555 G O4 L88 . A L88 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc22 B ZN ZN . A ZN 301 1_555 G O4E L88 . A L88 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc23 D CA CA . A CA 303 1_555 T O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc24 D CA CA . A CA 303 1_555 T O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc25 E CA CA . A CA 304 1_555 T O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc26 E CA CA . A CA 304 1_555 T O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 134 n n C1 C2 GOL sing 135 n n C1 H11 GOL sing 136 n n C1 H12 GOL sing 137 n n O1 HO1 GOL sing 138 n n C2 O2 GOL sing 139 n n C2 C3 GOL sing 140 n n C2 H2 GOL sing 141 n n O2 HO2 GOL sing 142 n n C3 O3 GOL sing 143 n n C3 H31 GOL sing 144 n n C3 H32 GOL sing 145 n n O3 HO3 GOL sing 146 n n # _atom_sites.entry_id 4I03 _atom_sites.fract_transf_matrix[1][1] 0.019309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 500 ZN ZN . C 2 ZN A 1 302 501 ZN ZN . D 3 CA A 1 303 502 CA CA . E 3 CA A 1 304 503 CA CA . F 3 CA A 1 305 504 CA CA . G 4 L88 A 1 306 1 L88 L88 . H 5 GOL A 1 307 1 GOL GOL . I 5 GOL A 1 308 3 GOL GOL . J 5 GOL A 1 309 4 GOL GOL . K 6 PGO A 1 310 1 PGO PGO . L 6 PGO A 1 311 2 PGO PGO . M 7 DMS A 1 312 1 DMS DMS . N 7 DMS A 1 313 2 DMS DMS . O 8 EDO A 1 314 1 EDO EDO . P 8 EDO A 1 315 2 EDO EDO . Q 8 EDO A 1 316 3 EDO EDO . R 8 EDO A 1 317 4 EDO EDO . S 9 PEG A 1 318 1 PEG PEG . T 10 HOH A 1 401 1 HOH HOH . T 10 HOH A 2 402 2 HOH HOH . T 10 HOH A 3 403 3 HOH HOH . T 10 HOH A 4 404 4 HOH HOH . T 10 HOH A 5 405 5 HOH HOH . T 10 HOH A 6 406 6 HOH HOH . T 10 HOH A 7 407 7 HOH HOH . T 10 HOH A 8 408 8 HOH HOH . T 10 HOH A 9 409 9 HOH HOH . T 10 HOH A 10 410 10 HOH HOH . T 10 HOH A 11 411 11 HOH HOH . T 10 HOH A 12 412 12 HOH HOH . T 10 HOH A 13 413 13 HOH HOH . T 10 HOH A 14 414 14 HOH HOH . T 10 HOH A 15 415 15 HOH HOH . T 10 HOH A 16 416 16 HOH HOH . T 10 HOH A 17 417 17 HOH HOH . T 10 HOH A 18 418 18 HOH HOH . T 10 HOH A 19 419 19 HOH HOH . T 10 HOH A 20 420 20 HOH HOH . T 10 HOH A 21 421 22 HOH HOH . T 10 HOH A 22 422 23 HOH HOH . T 10 HOH A 23 423 24 HOH HOH . T 10 HOH A 24 424 25 HOH HOH . T 10 HOH A 25 425 26 HOH HOH . T 10 HOH A 26 426 27 HOH HOH . T 10 HOH A 27 427 28 HOH HOH . T 10 HOH A 28 428 29 HOH HOH . T 10 HOH A 29 429 30 HOH HOH . T 10 HOH A 30 430 31 HOH HOH . T 10 HOH A 31 431 32 HOH HOH . T 10 HOH A 32 432 33 HOH HOH . T 10 HOH A 33 433 34 HOH HOH . T 10 HOH A 34 434 36 HOH HOH . T 10 HOH A 35 435 37 HOH HOH . T 10 HOH A 36 436 38 HOH HOH . T 10 HOH A 37 437 39 HOH HOH . T 10 HOH A 38 438 41 HOH HOH . T 10 HOH A 39 439 43 HOH HOH . T 10 HOH A 40 440 45 HOH HOH . T 10 HOH A 41 441 49 HOH HOH . T 10 HOH A 42 442 50 HOH HOH . T 10 HOH A 43 443 51 HOH HOH . T 10 HOH A 44 444 53 HOH HOH . T 10 HOH A 45 445 54 HOH HOH . T 10 HOH A 46 446 56 HOH HOH . T 10 HOH A 47 447 57 HOH HOH . T 10 HOH A 48 448 58 HOH HOH . T 10 HOH A 49 449 59 HOH HOH . T 10 HOH A 50 450 60 HOH HOH . T 10 HOH A 51 451 61 HOH HOH . T 10 HOH A 52 452 62 HOH HOH . T 10 HOH A 53 453 63 HOH HOH . T 10 HOH A 54 454 64 HOH HOH . T 10 HOH A 55 455 65 HOH HOH . T 10 HOH A 56 456 66 HOH HOH . T 10 HOH A 57 457 67 HOH HOH . T 10 HOH A 58 458 69 HOH HOH . T 10 HOH A 59 459 70 HOH HOH . T 10 HOH A 60 460 72 HOH HOH . T 10 HOH A 61 461 73 HOH HOH . T 10 HOH A 62 462 75 HOH HOH . T 10 HOH A 63 463 76 HOH HOH . T 10 HOH A 64 464 78 HOH HOH . T 10 HOH A 65 465 79 HOH HOH . T 10 HOH A 66 466 80 HOH HOH . T 10 HOH A 67 467 81 HOH HOH . T 10 HOH A 68 468 82 HOH HOH . T 10 HOH A 69 469 83 HOH HOH . T 10 HOH A 70 470 84 HOH HOH . T 10 HOH A 71 471 85 HOH HOH . T 10 HOH A 72 472 86 HOH HOH . T 10 HOH A 73 473 88 HOH HOH . T 10 HOH A 74 474 89 HOH HOH . T 10 HOH A 75 475 90 HOH HOH . T 10 HOH A 76 476 91 HOH HOH . T 10 HOH A 77 477 92 HOH HOH . T 10 HOH A 78 478 94 HOH HOH . T 10 HOH A 79 479 95 HOH HOH . T 10 HOH A 80 480 96 HOH HOH . T 10 HOH A 81 481 97 HOH HOH . T 10 HOH A 82 482 99 HOH HOH . T 10 HOH A 83 483 100 HOH HOH . T 10 HOH A 84 484 101 HOH HOH . T 10 HOH A 85 485 102 HOH HOH . T 10 HOH A 86 486 105 HOH HOH . T 10 HOH A 87 487 107 HOH HOH . T 10 HOH A 88 488 108 HOH HOH . T 10 HOH A 89 489 109 HOH HOH . T 10 HOH A 90 490 111 HOH HOH . T 10 HOH A 91 491 112 HOH HOH . T 10 HOH A 92 492 114 HOH HOH . T 10 HOH A 93 493 117 HOH HOH . T 10 HOH A 94 494 118 HOH HOH . T 10 HOH A 95 495 119 HOH HOH . T 10 HOH A 96 496 120 HOH HOH . T 10 HOH A 97 497 123 HOH HOH . T 10 HOH A 98 498 130 HOH HOH . T 10 HOH A 99 499 131 HOH HOH . T 10 HOH A 100 500 133 HOH HOH . T 10 HOH A 101 501 135 HOH HOH . T 10 HOH A 102 502 136 HOH HOH . T 10 HOH A 103 503 140 HOH HOH . T 10 HOH A 104 504 141 HOH HOH . T 10 HOH A 105 505 143 HOH HOH . T 10 HOH A 106 506 144 HOH HOH . T 10 HOH A 107 507 147 HOH HOH . T 10 HOH A 108 508 148 HOH HOH . T 10 HOH A 109 509 149 HOH HOH . T 10 HOH A 110 510 150 HOH HOH . T 10 HOH A 111 511 151 HOH HOH . T 10 HOH A 112 512 152 HOH HOH . T 10 HOH A 113 513 157 HOH HOH . T 10 HOH A 114 514 159 HOH HOH . T 10 HOH A 115 515 160 HOH HOH . T 10 HOH A 116 516 163 HOH HOH . T 10 HOH A 117 517 167 HOH HOH . T 10 HOH A 118 518 168 HOH HOH . T 10 HOH A 119 519 169 HOH HOH . T 10 HOH A 120 520 170 HOH HOH . T 10 HOH A 121 521 171 HOH HOH . T 10 HOH A 122 522 172 HOH HOH . T 10 HOH A 123 523 173 HOH HOH . T 10 HOH A 124 524 174 HOH HOH . T 10 HOH A 125 525 175 HOH HOH . T 10 HOH A 126 526 176 HOH HOH . T 10 HOH A 127 527 179 HOH HOH . T 10 HOH A 128 528 181 HOH HOH . T 10 HOH A 129 529 183 HOH HOH . T 10 HOH A 130 530 184 HOH HOH . T 10 HOH A 131 531 185 HOH HOH . T 10 HOH A 132 532 186 HOH HOH . T 10 HOH A 133 533 187 HOH HOH . T 10 HOH A 134 534 188 HOH HOH . T 10 HOH A 135 535 190 HOH HOH . T 10 HOH A 136 536 192 HOH HOH . T 10 HOH A 137 537 194 HOH HOH . T 10 HOH A 138 538 199 HOH HOH . T 10 HOH A 139 539 202 HOH HOH . T 10 HOH A 140 540 203 HOH HOH . T 10 HOH A 141 541 205 HOH HOH . T 10 HOH A 142 542 208 HOH HOH . T 10 HOH A 143 543 211 HOH HOH . T 10 HOH A 144 544 212 HOH HOH . T 10 HOH A 145 545 213 HOH HOH . T 10 HOH A 146 546 214 HOH HOH . T 10 HOH A 147 547 217 HOH HOH . T 10 HOH A 148 548 218 HOH HOH . T 10 HOH A 149 549 219 HOH HOH . T 10 HOH A 150 550 221 HOH HOH . T 10 HOH A 151 551 222 HOH HOH . T 10 HOH A 152 552 225 HOH HOH . T 10 HOH A 153 553 226 HOH HOH . T 10 HOH A 154 554 228 HOH HOH . T 10 HOH A 155 555 229 HOH HOH . T 10 HOH A 156 556 233 HOH HOH . T 10 HOH A 157 557 234 HOH HOH . T 10 HOH A 158 558 235 HOH HOH . T 10 HOH A 159 559 236 HOH HOH . T 10 HOH A 160 560 237 HOH HOH . T 10 HOH A 161 561 238 HOH HOH . T 10 HOH A 162 562 239 HOH HOH . T 10 HOH A 163 563 242 HOH HOH . T 10 HOH A 164 564 243 HOH HOH . T 10 HOH A 165 565 245 HOH HOH . T 10 HOH A 166 566 247 HOH HOH . T 10 HOH A 167 567 248 HOH HOH . T 10 HOH A 168 568 249 HOH HOH . T 10 HOH A 169 569 250 HOH HOH . T 10 HOH A 170 570 251 HOH HOH . T 10 HOH A 171 571 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 5 1.234 5.631 21.114 1 59.15 ? C1 GOL 309 A 1 HETATM 2 O O1 GOL . . . J 5 1.493 4.495 20.328 1 52.85 ? O1 GOL 309 A 1 HETATM 3 C C2 GOL . . . J 5 1.027 6.973 20.393 1 61.52 ? C2 GOL 309 A 1 HETATM 4 O O2 GOL . . . J 5 -0.361 7.276 20.485 1 61.9 ? O2 GOL 309 A 1 HETATM 5 C C3 GOL . . . J 5 1.961 8.04 21.026 1 62.08 ? C3 GOL 309 A 1 HETATM 6 O O3 GOL . . . J 5 1.641 9.393 20.744 1 65.53 ? O3 GOL 309 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 758 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #