data_4I0A # _model_server_result.job_id vjUamkeYGN2rW6SiqS7wgA _model_server_result.datetime_utc '2024-11-24 18:52:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4I0A # _exptl.entry_id 4I0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I0A _cell.length_a 45.9 _cell.length_b 93.3 _cell.length_c 104.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 4I0A _atom_sites.fract_transf_matrix[1][1] 0.021786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 679 CMP CMP . D 2 CMP A 1 302 680 CMP CMP . E 3 GOL A 1 303 1 GOL GOL . F 2 CMP B 1 301 679 CMP CMP . G 4 HOH A 1 401 4 HOH HOH . G 4 HOH A 2 402 5 HOH HOH . G 4 HOH A 3 403 7 HOH HOH . G 4 HOH A 4 404 9 HOH HOH . G 4 HOH A 5 405 10 HOH HOH . G 4 HOH A 6 406 12 HOH HOH . G 4 HOH A 7 407 18 HOH HOH . G 4 HOH A 8 408 20 HOH HOH . G 4 HOH A 9 409 23 HOH HOH . G 4 HOH A 10 410 30 HOH HOH . G 4 HOH A 11 411 32 HOH HOH . G 4 HOH A 12 412 33 HOH HOH . G 4 HOH A 13 413 35 HOH HOH . G 4 HOH A 14 414 38 HOH HOH . G 4 HOH A 15 415 39 HOH HOH . G 4 HOH A 16 416 40 HOH HOH . G 4 HOH A 17 417 41 HOH HOH . G 4 HOH A 18 418 45 HOH HOH . G 4 HOH A 19 419 47 HOH HOH . G 4 HOH A 20 420 50 HOH HOH . G 4 HOH A 21 421 51 HOH HOH . G 4 HOH A 22 422 52 HOH HOH . G 4 HOH A 23 423 53 HOH HOH . G 4 HOH A 24 424 55 HOH HOH . G 4 HOH A 25 425 57 HOH HOH . G 4 HOH A 26 426 58 HOH HOH . G 4 HOH A 27 427 59 HOH HOH . G 4 HOH A 28 428 60 HOH HOH . G 4 HOH A 29 429 61 HOH HOH . G 4 HOH A 30 430 62 HOH HOH . G 4 HOH A 31 431 63 HOH HOH . G 4 HOH A 32 432 64 HOH HOH . G 4 HOH A 33 433 66 HOH HOH . G 4 HOH A 34 434 67 HOH HOH . G 4 HOH A 35 435 68 HOH HOH . G 4 HOH A 36 436 69 HOH HOH . G 4 HOH A 37 437 70 HOH HOH . G 4 HOH A 38 438 74 HOH HOH . G 4 HOH A 39 439 75 HOH HOH . G 4 HOH A 40 440 76 HOH HOH . G 4 HOH A 41 441 77 HOH HOH . G 4 HOH A 42 442 78 HOH HOH . G 4 HOH A 43 443 79 HOH HOH . G 4 HOH A 44 444 80 HOH HOH . G 4 HOH A 45 445 81 HOH HOH . G 4 HOH A 46 446 82 HOH HOH . G 4 HOH A 47 447 83 HOH HOH . G 4 HOH A 48 448 84 HOH HOH . G 4 HOH A 49 449 85 HOH HOH . G 4 HOH A 50 450 88 HOH HOH . G 4 HOH A 51 451 89 HOH HOH . G 4 HOH A 52 452 90 HOH HOH . G 4 HOH A 53 453 91 HOH HOH . G 4 HOH A 54 454 112 HOH HOH . G 4 HOH A 55 455 115 HOH HOH . G 4 HOH A 56 456 117 HOH HOH . H 4 HOH B 1 401 54 HOH HOH . H 4 HOH B 2 402 56 HOH HOH . H 4 HOH B 3 403 65 HOH HOH . H 4 HOH B 4 404 86 HOH HOH . H 4 HOH B 5 405 87 HOH HOH . H 4 HOH B 6 406 1 HOH HOH . H 4 HOH B 7 407 2 HOH HOH . H 4 HOH B 8 408 3 HOH HOH . H 4 HOH B 9 409 6 HOH HOH . H 4 HOH B 10 410 8 HOH HOH . H 4 HOH B 11 411 11 HOH HOH . H 4 HOH B 12 412 13 HOH HOH . H 4 HOH B 13 413 14 HOH HOH . H 4 HOH B 14 414 15 HOH HOH . H 4 HOH B 15 415 16 HOH HOH . H 4 HOH B 16 416 17 HOH HOH . H 4 HOH B 17 417 19 HOH HOH . H 4 HOH B 18 418 21 HOH HOH . H 4 HOH B 19 419 22 HOH HOH . H 4 HOH B 20 420 24 HOH HOH . H 4 HOH B 21 421 25 HOH HOH . H 4 HOH B 22 422 26 HOH HOH . H 4 HOH B 23 423 27 HOH HOH . H 4 HOH B 24 424 28 HOH HOH . H 4 HOH B 25 425 29 HOH HOH . H 4 HOH B 26 426 31 HOH HOH . H 4 HOH B 27 427 34 HOH HOH . H 4 HOH B 28 428 36 HOH HOH . H 4 HOH B 29 429 37 HOH HOH . H 4 HOH B 30 430 42 HOH HOH . H 4 HOH B 31 431 43 HOH HOH . H 4 HOH B 32 432 44 HOH HOH . H 4 HOH B 33 433 46 HOH HOH . H 4 HOH B 34 434 48 HOH HOH . H 4 HOH B 35 435 49 HOH HOH . H 4 HOH B 36 436 71 HOH HOH . H 4 HOH B 37 437 72 HOH HOH . H 4 HOH B 38 438 73 HOH HOH . H 4 HOH B 39 439 92 HOH HOH . H 4 HOH B 40 440 93 HOH HOH . H 4 HOH B 41 441 94 HOH HOH . H 4 HOH B 42 442 95 HOH HOH . H 4 HOH B 43 443 96 HOH HOH . H 4 HOH B 44 444 97 HOH HOH . H 4 HOH B 45 445 98 HOH HOH . H 4 HOH B 46 446 99 HOH HOH . H 4 HOH B 47 447 100 HOH HOH . H 4 HOH B 48 448 102 HOH HOH . H 4 HOH B 49 449 103 HOH HOH . H 4 HOH B 50 450 104 HOH HOH . H 4 HOH B 51 451 105 HOH HOH . H 4 HOH B 52 452 106 HOH HOH . H 4 HOH B 53 453 107 HOH HOH . H 4 HOH B 54 454 108 HOH HOH . H 4 HOH B 55 455 109 HOH HOH . H 4 HOH B 56 456 110 HOH HOH . H 4 HOH B 57 457 111 HOH HOH . H 4 HOH B 58 458 113 HOH HOH . H 4 HOH B 59 459 114 HOH HOH . H 4 HOH B 60 460 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 2 26.511 3.493 -21.626 1 41.2 ? P CMP 302 A 1 HETATM 2 O O1P CMP . . . D 2 27.803 4.035 -21.048 1 49.6 ? O1P CMP 302 A 1 HETATM 3 O O2P CMP . . . D 2 26.329 3.392 -23.135 1 38.68 ? O2P CMP 302 A 1 HETATM 4 O O5' CMP . . . D 2 25.255 4.377 -21.009 1 43.48 ? O5' CMP 302 A 1 HETATM 5 C C5' CMP . . . D 2 23.893 3.834 -20.982 1 40.61 ? C5' CMP 302 A 1 HETATM 6 C C4' CMP . . . D 2 23.95 2.427 -20.362 1 39.76 ? C4' CMP 302 A 1 HETATM 7 O O4' CMP . . . D 2 22.705 1.672 -20.399 1 38.84 ? O4' CMP 302 A 1 HETATM 8 C C3' CMP . . . D 2 24.921 1.529 -21.082 1 38.97 ? C3' CMP 302 A 1 HETATM 9 O O3' CMP . . . D 2 26.239 1.999 -20.967 1 38.59 ? O3' CMP 302 A 1 HETATM 10 C C2' CMP . . . D 2 24.597 0.162 -20.534 1 43.4 ? C2' CMP 302 A 1 HETATM 11 O O2' CMP . . . D 2 25.122 -0.033 -19.21 1 36.35 ? O2' CMP 302 A 1 HETATM 12 C C1' CMP . . . D 2 23.048 0.239 -20.491 1 43.47 ? C1' CMP 302 A 1 HETATM 13 N N9 CMP . . . D 2 22.594 -0.336 -21.806 1 48.88 ? N9 CMP 302 A 1 HETATM 14 C C8 CMP . . . D 2 23.213 -0.168 -23.043 1 46.02 ? C8 CMP 302 A 1 HETATM 15 N N7 CMP . . . D 2 22.577 -0.9 -24.012 1 45.77 ? N7 CMP 302 A 1 HETATM 16 C C5 CMP . . . D 2 21.58 -1.537 -23.392 1 53.46 ? C5 CMP 302 A 1 HETATM 17 C C6 CMP . . . D 2 20.535 -2.448 -23.824 1 50.66 ? C6 CMP 302 A 1 HETATM 18 N N6 CMP . . . D 2 20.427 -2.839 -25.102 1 57.19 ? N6 CMP 302 A 1 HETATM 19 N N1 CMP . . . D 2 19.697 -2.913 -22.897 1 61.56 ? N1 CMP 302 A 1 HETATM 20 C C2 CMP . . . D 2 19.794 -2.529 -21.575 1 60.09 ? C2 CMP 302 A 1 HETATM 21 N N3 CMP . . . D 2 20.734 -1.666 -21.118 1 53.88 ? N3 CMP 302 A 1 HETATM 22 C C4 CMP . . . D 2 21.623 -1.165 -21.962 1 49.96 ? C4 CMP 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 1094 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 22 #