data_4I0P
#
_model_server_result.job_id            n3nW8JQG1todFmj9uH3ltA 
_model_server_result.datetime_utc      '2024-11-04 23:02:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":202}' 
#
_entry.id    4I0P 
#
_exptl.entry_id    4I0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.49 
_cell.angle_gamma         90 
_cell.entry_id            4I0P 
_cell.length_a            83.26 
_cell.length_b            147.1 
_cell.length_c            95.959 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,U,V 1 1 
E,F,G,H,M,N,O,P,Q,R,S,T,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 M N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 24 1_555 A SG CYS 67 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 109 A CYS 121 1_555 A SG CYS 164 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 9 B CYS 11 1_555 B SG CYS 77 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 23 B CYS 25 1_555 B SG CYS 33 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 115 B CYS 117 1_555 B SG CYS 172 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 C SG CYS 107 C CYS 107 1_555 C SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 D SG CYS 12 D CYS 15 1_555 D SG CYS 76 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 114 D CYS 117 1_555 D SG CYS 170 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 E SG CYS 12 E CYS 24 1_555 E SG CYS 67 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 E SG CYS 109 E CYS 121 1_555 E SG CYS 164 E CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 F SG CYS 9 F CYS 11 1_555 F SG CYS 77 F CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 F SG CYS 23 F CYS 25 1_555 F SG CYS 33 F CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 F SG CYS 115 F CYS 117 1_555 F SG CYS 172 F CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf14 G SG CYS 107 G CYS 107 1_555 G SG CYS 163 G CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 H SG CYS 12 H CYS 15 1_555 H SG CYS 76 H CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 H SG CYS 114 H CYS 117 1_555 H SG CYS 170 H CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 3 A ASN 15 1_555 I C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 C ND2 ASN 118 C ASN 118 1_555 J C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 D ND2 ASN 16 D ASN 19 1_555 K C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 E ND2 ASN 3 E ASN 15 1_555 M C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 G ND2 ASN 78 G ASN 78 1_555 O C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 G ND2 ASN 118 G ASN 118 1_555 P C1 NAG . G NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 H ND2 ASN 16 H ASN 19 1_555 Q C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 256 n n 
C1 O1 NAG sing 257 n n 
C1 O5 NAG sing 258 n n 
C1 H1 NAG sing 259 n n 
C2 C3 NAG sing 260 n n 
C2 N2 NAG sing 261 n n 
C2 H2 NAG sing 262 n n 
C3 C4 NAG sing 263 n n 
C3 O3 NAG sing 264 n n 
C3 H3 NAG sing 265 n n 
C4 C5 NAG sing 266 n n 
C4 O4 NAG sing 267 n n 
C4 H4 NAG sing 268 n n 
C5 C6 NAG sing 269 n n 
C5 O5 NAG sing 270 n n 
C5 H5 NAG sing 271 n n 
C6 O6 NAG sing 272 n n 
C6 H61 NAG sing 273 n n 
C6 H62 NAG sing 274 n n 
C7 C8 NAG sing 275 n n 
C7 N2 NAG sing 276 n n 
C7 O7 NAG doub 277 n n 
C8 H81 NAG sing 278 n n 
C8 H82 NAG sing 279 n n 
C8 H83 NAG sing 280 n n 
N2 HN2 NAG sing 281 n n 
O1 HO1 NAG sing 282 n n 
O3 HO3 NAG sing 283 n n 
O4 HO4 NAG sing 284 n n 
O6 HO6 NAG sing 285 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4I0P 
_atom_sites.fract_transf_matrix[1][1]    0.012011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003555 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 NAG A 1 301 301 NAG NAG . 
J 5 NAG C 1 201 202 NAG NAG . 
K 5 NAG D 1 201 201 NAG NAG . 
L 6 GOL D 1 202 203 GOL GOL . 
M 5 NAG E 1 301 301 NAG NAG . 
N 6 GOL F 1 201 202 GOL GOL . 
O 5 NAG G 1 201 201 NAG NAG . 
P 5 NAG G 1 202 202 NAG NAG . 
Q 5 NAG H 1 201 201 NAG NAG . 
R 7 PGE H 1 202 203 PGE PGE . 
S 8 ACT H 1 203 204 ACT ACT . 
T 6 GOL H 1 204 205 GOL GOL . 
U 9 HOH B 1 401 201 HOH HOH . 
U 9 HOH B 2 402 202 HOH HOH . 
V 9 HOH C 1 401 401 HOH HOH . 
W 9 HOH F 1 301 301 HOH HOH . 
X 9 HOH G 1 401 401 HOH HOH . 
X 9 HOH G 2 402 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . P 5 -46.608 -49.368 -56.894 1 36.31 ? C1 NAG 202 G 1 
HETATM 2 C C2 NAG . . . P 5 -45.591 -50.022 -55.957 1 20.63 ? C2 NAG 202 G 1 
HETATM 3 C C3 NAG . . . P 5 -46.239 -50.931 -54.921 1 36.61 ? C3 NAG 202 G 1 
HETATM 4 C C4 NAG . . . P 5 -47.377 -50.217 -54.215 1 39.56 ? C4 NAG 202 G 1 
HETATM 5 C C5 NAG . . . P 5 -48.354 -49.649 -55.236 1 34.28 ? C5 NAG 202 G 1 
HETATM 6 C C6 NAG . . . P 5 -49.437 -48.839 -54.529 1 29.81 ? C6 NAG 202 G 1 
HETATM 7 C C7 NAG . . . P 5 -43.378 -50.334 -56.895 1 15.46 ? C7 NAG 202 G 1 
HETATM 8 C C8 NAG . . . P 5 -42.455 -51.256 -57.631 1 14.05 ? C8 NAG 202 G 1 
HETATM 9 N N2 NAG . . . P 5 -44.621 -50.773 -56.73 1 30.57 ? N2 NAG 202 G 1 
HETATM 10 O O3 NAG . . . P 5 -45.262 -51.308 -53.98 1 55.49 ? O3 NAG 202 G 1 
HETATM 11 O O4 NAG . . . P 5 -48.042 -51.119 -53.357 1 24.73 ? O4 NAG 202 G 1 
HETATM 12 O O5 NAG . . . P 5 -47.702 -48.813 -56.177 1 46.39 ? O5 NAG 202 G 1 
HETATM 13 O O6 NAG . . . P 5 -48.863 -47.714 -53.903 1 21.08 ? O6 NAG 202 G 1 
HETATM 14 O O7 NAG . . . P 5 -42.976 -49.25 -56.479 1 19.33 ? O7 NAG 202 G 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#