data_4I0P # _model_server_result.job_id eHyTHoGRLssot3KXrQQ0KQ _model_server_result.datetime_utc '2024-11-04 23:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":202}' # _entry.id 4I0P # _exptl.entry_id 4I0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 4I0P _cell.length_a 83.26 _cell.length_b 147.1 _cell.length_c 95.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,U,V 1 1 E,F,G,H,M,N,O,P,Q,R,S,T,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 24 1_555 A SG CYS 67 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 109 A CYS 121 1_555 A SG CYS 164 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 9 B CYS 11 1_555 B SG CYS 77 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 23 B CYS 25 1_555 B SG CYS 33 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 115 B CYS 117 1_555 B SG CYS 172 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 C SG CYS 107 C CYS 107 1_555 C SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 12 D CYS 15 1_555 D SG CYS 76 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 114 D CYS 117 1_555 D SG CYS 170 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 12 E CYS 24 1_555 E SG CYS 67 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 109 E CYS 121 1_555 E SG CYS 164 E CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 9 F CYS 11 1_555 F SG CYS 77 F CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 23 F CYS 25 1_555 F SG CYS 33 F CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 F SG CYS 115 F CYS 117 1_555 F SG CYS 172 F CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 G SG CYS 107 G CYS 107 1_555 G SG CYS 163 G CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 H SG CYS 12 H CYS 15 1_555 H SG CYS 76 H CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 H SG CYS 114 H CYS 117 1_555 H SG CYS 170 H CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 3 A ASN 15 1_555 I C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 C ND2 ASN 118 C ASN 118 1_555 J C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 D ND2 ASN 16 D ASN 19 1_555 K C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 E ND2 ASN 3 E ASN 15 1_555 M C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 G ND2 ASN 78 G ASN 78 1_555 O C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 G ND2 ASN 118 G ASN 118 1_555 P C1 NAG . G NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 H ND2 ASN 16 H ASN 19 1_555 Q C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 286 n n C1 C2 PGE sing 287 n n C1 H1 PGE sing 288 n n C1 H12 PGE sing 289 n n O1 HO1 PGE sing 290 n n C2 O2 PGE sing 291 n n C2 H2 PGE sing 292 n n C2 H22 PGE sing 293 n n O2 C3 PGE sing 294 n n C3 C4 PGE sing 295 n n C3 H3 PGE sing 296 n n C3 H32 PGE sing 297 n n C4 O3 PGE sing 298 n n C4 H4 PGE sing 299 n n C4 H42 PGE sing 300 n n O4 C6 PGE sing 301 n n O4 HO4 PGE sing 302 n n C6 C5 PGE sing 303 n n C6 H6 PGE sing 304 n n C6 H62 PGE sing 305 n n C5 O3 PGE sing 306 n n C5 H5 PGE sing 307 n n C5 H52 PGE sing 308 n n # _atom_sites.entry_id 4I0P _atom_sites.fract_transf_matrix[1][1] 0.012011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003555 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG A 1 301 301 NAG NAG . J 5 NAG C 1 201 202 NAG NAG . K 5 NAG D 1 201 201 NAG NAG . L 6 GOL D 1 202 203 GOL GOL . M 5 NAG E 1 301 301 NAG NAG . N 6 GOL F 1 201 202 GOL GOL . O 5 NAG G 1 201 201 NAG NAG . P 5 NAG G 1 202 202 NAG NAG . Q 5 NAG H 1 201 201 NAG NAG . R 7 PGE H 1 202 203 PGE PGE . S 8 ACT H 1 203 204 ACT ACT . T 6 GOL H 1 204 205 GOL GOL . U 9 HOH B 1 401 201 HOH HOH . U 9 HOH B 2 402 202 HOH HOH . V 9 HOH C 1 401 401 HOH HOH . W 9 HOH F 1 301 301 HOH HOH . X 9 HOH G 1 401 401 HOH HOH . X 9 HOH G 2 402 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . R 7 -18.044 -71.058 -74.827 1 18.26 ? C1 PGE 202 H 1 HETATM 2 O O1 PGE . . . R 7 -17.899 -72.359 -74.31 1 12.41 ? O1 PGE 202 H 1 HETATM 3 C C2 PGE . . . R 7 -18.65 -70.189 -73.697 1 15.41 ? C2 PGE 202 H 1 HETATM 4 O O2 PGE . . . R 7 -17.589 -69.895 -72.82 1 20.43 ? O2 PGE 202 H 1 HETATM 5 C C3 PGE . . . R 7 -17.932 -68.984 -71.8 1 16.23 ? C3 PGE 202 H 1 HETATM 6 C C4 PGE . . . R 7 -17.943 -69.769 -70.468 1 20.34 ? C4 PGE 202 H 1 HETATM 7 O O4 PGE . . . R 7 -16.239 -73.27 -69.236 1 15.93 ? O4 PGE 202 H 1 HETATM 8 C C6 PGE . . . R 7 -15.478 -72.085 -69.209 1 17.4 ? C6 PGE 202 H 1 HETATM 9 C C5 PGE . . . R 7 -16.489 -70.937 -69.037 1 15.28 ? C5 PGE 202 H 1 HETATM 10 O O3 PGE . . . R 7 -16.676 -70.369 -70.304 1 25.09 ? O3 PGE 202 H 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #