data_4I18 # _model_server_result.job_id TXvKFZAbanfqfEibaH6JJA _model_server_result.datetime_utc '2024-11-04 22:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4I18 # _exptl.entry_id 4I18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I18 _cell.length_a 285.826 _cell.length_b 285.826 _cell.length_c 62.248 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,M 1 1 C,D,E,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 K N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 L CYS 24 1_555 A SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 137 L CYS 137 1_555 A SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf4 B SG CYS 155 H CYS 155 1_555 B SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 C SG CYS 24 B CYS 24 1_555 C SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf6 C SG CYS 137 B CYS 137 1_555 C SG CYS 197 B CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 D SG CYS 25 A CYS 25 1_555 D SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf8 D SG CYS 155 A CYS 155 1_555 D SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf9 E SG CYS 12 R CYS 12 1_555 E SG CYS 22 R CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf10 E SG CYS 51 R CYS 51 1_555 E SG CYS 62 R CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf11 F SG CYS 12 C CYS 12 1_555 F SG CYS 22 C CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf12 F SG CYS 51 C CYS 51 1_555 F SG CYS 62 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc1 B OG SER 78 H SER 78 1_555 H CA CA . H CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc2 H CA CA . H CA 301 1_555 D OG SER 78 A SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 4I18 _atom_sites.fract_transf_matrix[1][1] 0.003499 _atom_sites.fract_transf_matrix[1][2] 0.00202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL L 1 301 1 GOL GOL . H 5 CA H 1 301 1 CA CA . I 4 GOL H 1 302 1 GOL GOL . J 5 CA B 1 301 1 CA CA . K 4 GOL A 1 301 1 GOL GOL . L 6 ACT R 1 301 1 ACT DRG . M 4 GOL C 1 301 1 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -148.732 0.483 -23.141 1 66.02 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . G 4 -148.111 0.29 -24.422 1 75.49 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . G 4 -149.5 1.814 -23.171 1 58.17 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . G 4 -150.608 1.729 -24.071 1 55.13 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . G 4 -149.984 2.183 -21.771 1 49.43 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . G 4 -149.462 3.457 -21.357 1 46.7 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #