data_4I27 # _model_server_result.job_id rpfewOllmUXzv9ZzPkp3kg _model_server_result.datetime_utc '2024-11-13 04:48:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 4I27 # _exptl.entry_id 4I27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.75 _cell.angle_gamma 90 _cell.entry_id 4I27 _cell.length_a 46.94 _cell.length_b 95.9 _cell.length_c 47.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 5 C DA 5 1_555 B P 2DT 6 C 2DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? metalc ? metalc1 A O THR 143 A THR 253 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A O VAL 145 A VAL 255 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc3 A O VAL 148 A VAL 258 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc4 A OD1 ASP 233 A ASP 343 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A OD2 ASP 235 A ASP 345 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc6 C MG MG . A MG 601 1_555 D O1A D3T . A D3T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 C MG MG . A MG 601 1_555 D O2B D3T . A D3T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc8 C MG MG . A MG 601 1_555 D O3G D3T . A D3T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc9 C MG MG . A MG 601 1_555 F O HOH . A HOH 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc10 E NA NA . A NA 603 1_555 B OP1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4I27 _atom_sites.fract_transf_matrix[1][1] 0.021304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006819 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 601 1 MG MG . D 4 D3T A 1 602 1 D3T TTP . E 5 NA A 1 603 1 NA NA . F 6 HOH A 1 701 1 HOH HOH . F 6 HOH A 2 702 2 HOH HOH . F 6 HOH A 3 703 3 HOH HOH . F 6 HOH A 4 704 4 HOH HOH . F 6 HOH A 5 705 5 HOH HOH . F 6 HOH A 6 706 6 HOH HOH . F 6 HOH A 7 707 7 HOH HOH . F 6 HOH A 8 708 8 HOH HOH . F 6 HOH A 9 709 10 HOH HOH . F 6 HOH A 10 710 11 HOH HOH . F 6 HOH A 11 711 12 HOH HOH . F 6 HOH A 12 712 13 HOH HOH . F 6 HOH A 13 713 14 HOH HOH . F 6 HOH A 14 714 15 HOH HOH . F 6 HOH A 15 715 16 HOH HOH . F 6 HOH A 16 716 17 HOH HOH . F 6 HOH A 17 717 18 HOH HOH . F 6 HOH A 18 718 19 HOH HOH . F 6 HOH A 19 719 20 HOH HOH . F 6 HOH A 20 720 21 HOH HOH . F 6 HOH A 21 721 22 HOH HOH . F 6 HOH A 22 722 23 HOH HOH . F 6 HOH A 23 723 24 HOH HOH . F 6 HOH A 24 724 25 HOH HOH . F 6 HOH A 25 725 26 HOH HOH . F 6 HOH A 26 726 27 HOH HOH . F 6 HOH A 27 727 28 HOH HOH . F 6 HOH A 28 728 29 HOH HOH . F 6 HOH A 29 729 30 HOH HOH . F 6 HOH A 30 730 31 HOH HOH . F 6 HOH A 31 731 32 HOH HOH . F 6 HOH A 32 732 33 HOH HOH . F 6 HOH A 33 733 34 HOH HOH . F 6 HOH A 34 734 35 HOH HOH . F 6 HOH A 35 735 36 HOH HOH . F 6 HOH A 36 736 37 HOH HOH . F 6 HOH A 37 737 38 HOH HOH . F 6 HOH A 38 738 39 HOH HOH . F 6 HOH A 39 739 40 HOH HOH . F 6 HOH A 40 740 41 HOH HOH . F 6 HOH A 41 741 42 HOH HOH . F 6 HOH A 42 742 43 HOH HOH . F 6 HOH A 43 743 44 HOH HOH . F 6 HOH A 44 744 45 HOH HOH . F 6 HOH A 45 745 46 HOH HOH . F 6 HOH A 46 746 48 HOH HOH . F 6 HOH A 47 747 49 HOH HOH . F 6 HOH A 48 748 50 HOH HOH . F 6 HOH A 49 749 51 HOH HOH . F 6 HOH A 50 750 52 HOH HOH . F 6 HOH A 51 751 53 HOH HOH . F 6 HOH A 52 752 54 HOH HOH . F 6 HOH A 53 753 55 HOH HOH . F 6 HOH A 54 754 56 HOH HOH . F 6 HOH A 55 755 57 HOH HOH . F 6 HOH A 56 756 58 HOH HOH . F 6 HOH A 57 757 59 HOH HOH . F 6 HOH A 58 758 60 HOH HOH . F 6 HOH A 59 759 61 HOH HOH . F 6 HOH A 60 760 62 HOH HOH . F 6 HOH A 61 761 63 HOH HOH . F 6 HOH A 62 762 64 HOH HOH . F 6 HOH A 63 763 65 HOH HOH . F 6 HOH A 64 764 66 HOH HOH . F 6 HOH A 65 765 67 HOH HOH . F 6 HOH A 66 766 68 HOH HOH . F 6 HOH A 67 767 69 HOH HOH . F 6 HOH A 68 768 70 HOH HOH . F 6 HOH A 69 769 71 HOH HOH . F 6 HOH A 70 770 72 HOH HOH . F 6 HOH A 71 771 73 HOH HOH . F 6 HOH A 72 772 74 HOH HOH . F 6 HOH A 73 773 75 HOH HOH . F 6 HOH A 74 774 76 HOH HOH . F 6 HOH A 75 775 78 HOH HOH . F 6 HOH A 76 776 79 HOH HOH . F 6 HOH A 77 777 80 HOH HOH . F 6 HOH A 78 778 81 HOH HOH . F 6 HOH A 79 779 82 HOH HOH . F 6 HOH A 80 780 83 HOH HOH . F 6 HOH A 81 781 84 HOH HOH . F 6 HOH A 82 782 85 HOH HOH . F 6 HOH A 83 783 86 HOH HOH . F 6 HOH A 84 784 87 HOH HOH . F 6 HOH A 85 785 88 HOH HOH . F 6 HOH A 86 786 89 HOH HOH . F 6 HOH A 87 787 90 HOH HOH . F 6 HOH A 88 788 91 HOH HOH . F 6 HOH A 89 789 92 HOH HOH . F 6 HOH A 90 790 93 HOH HOH . F 6 HOH A 91 791 94 HOH HOH . F 6 HOH A 92 792 95 HOH HOH . F 6 HOH A 93 793 96 HOH HOH . F 6 HOH A 94 794 97 HOH HOH . F 6 HOH A 95 795 98 HOH HOH . F 6 HOH A 96 796 101 HOH HOH . F 6 HOH A 97 797 102 HOH HOH . F 6 HOH A 98 798 103 HOH HOH . F 6 HOH A 99 799 104 HOH HOH . F 6 HOH A 100 800 105 HOH HOH . F 6 HOH A 101 801 106 HOH HOH . F 6 HOH A 102 802 107 HOH HOH . F 6 HOH A 103 803 108 HOH HOH . F 6 HOH A 104 804 109 HOH HOH . F 6 HOH A 105 805 110 HOH HOH . F 6 HOH A 106 806 111 HOH HOH . F 6 HOH A 107 807 112 HOH HOH . F 6 HOH A 108 808 113 HOH HOH . F 6 HOH A 109 809 114 HOH HOH . F 6 HOH A 110 810 115 HOH HOH . F 6 HOH A 111 811 116 HOH HOH . F 6 HOH A 112 812 117 HOH HOH . F 6 HOH A 113 813 118 HOH HOH . F 6 HOH A 114 814 119 HOH HOH . F 6 HOH A 115 815 120 HOH HOH . F 6 HOH A 116 816 121 HOH HOH . F 6 HOH A 117 817 122 HOH HOH . F 6 HOH A 118 818 123 HOH HOH . F 6 HOH A 119 819 124 HOH HOH . F 6 HOH A 120 820 125 HOH HOH . F 6 HOH A 121 821 126 HOH HOH . F 6 HOH A 122 822 127 HOH HOH . F 6 HOH A 123 823 128 HOH HOH . F 6 HOH A 124 824 130 HOH HOH . F 6 HOH A 125 825 131 HOH HOH . F 6 HOH A 126 826 132 HOH HOH . F 6 HOH A 127 827 133 HOH HOH . F 6 HOH A 128 828 134 HOH HOH . F 6 HOH A 129 829 135 HOH HOH . F 6 HOH A 130 830 136 HOH HOH . F 6 HOH A 131 831 137 HOH HOH . F 6 HOH A 132 832 139 HOH HOH . F 6 HOH A 133 833 140 HOH HOH . F 6 HOH A 134 834 141 HOH HOH . F 6 HOH A 135 835 142 HOH HOH . F 6 HOH A 136 836 143 HOH HOH . F 6 HOH A 137 837 144 HOH HOH . F 6 HOH A 138 838 145 HOH HOH . F 6 HOH A 139 839 146 HOH HOH . F 6 HOH A 140 840 147 HOH HOH . F 6 HOH A 141 841 148 HOH HOH . F 6 HOH A 142 842 149 HOH HOH . F 6 HOH A 143 843 150 HOH HOH . F 6 HOH A 144 844 151 HOH HOH . F 6 HOH A 145 845 152 HOH HOH . F 6 HOH A 146 846 153 HOH HOH . F 6 HOH A 147 847 154 HOH HOH . F 6 HOH A 148 848 155 HOH HOH . F 6 HOH A 149 849 156 HOH HOH . F 6 HOH A 150 850 157 HOH HOH . F 6 HOH A 151 851 158 HOH HOH . F 6 HOH A 152 852 159 HOH HOH . F 6 HOH A 153 853 160 HOH HOH . F 6 HOH A 154 854 161 HOH HOH . F 6 HOH A 155 855 162 HOH HOH . F 6 HOH A 156 856 163 HOH HOH . F 6 HOH A 157 857 164 HOH HOH . F 6 HOH A 158 858 165 HOH HOH . F 6 HOH A 159 859 166 HOH HOH . F 6 HOH A 160 860 167 HOH HOH . F 6 HOH A 161 861 168 HOH HOH . F 6 HOH A 162 862 170 HOH HOH . F 6 HOH A 163 863 171 HOH HOH . F 6 HOH A 164 864 172 HOH HOH . F 6 HOH A 165 865 173 HOH HOH . F 6 HOH A 166 866 174 HOH HOH . F 6 HOH A 167 867 175 HOH HOH . F 6 HOH A 168 868 177 HOH HOH . F 6 HOH A 169 869 178 HOH HOH . F 6 HOH A 170 870 179 HOH HOH . F 6 HOH A 171 871 180 HOH HOH . F 6 HOH A 172 872 181 HOH HOH . F 6 HOH A 173 873 182 HOH HOH . F 6 HOH A 174 874 183 HOH HOH . F 6 HOH A 175 875 184 HOH HOH . F 6 HOH A 176 876 185 HOH HOH . F 6 HOH A 177 877 186 HOH HOH . F 6 HOH A 178 878 187 HOH HOH . F 6 HOH A 179 879 188 HOH HOH . F 6 HOH A 180 880 189 HOH HOH . F 6 HOH A 181 881 190 HOH HOH . F 6 HOH A 182 882 191 HOH HOH . F 6 HOH A 183 883 192 HOH HOH . F 6 HOH A 184 884 193 HOH HOH . F 6 HOH A 185 885 194 HOH HOH . F 6 HOH A 186 886 195 HOH HOH . F 6 HOH A 187 887 196 HOH HOH . F 6 HOH A 188 888 197 HOH HOH . F 6 HOH A 189 889 198 HOH HOH . F 6 HOH A 190 890 199 HOH HOH . F 6 HOH A 191 891 200 HOH HOH . F 6 HOH A 192 892 201 HOH HOH . F 6 HOH A 193 893 202 HOH HOH . F 6 HOH A 194 894 203 HOH HOH . F 6 HOH A 195 895 204 HOH HOH . F 6 HOH A 196 896 205 HOH HOH . F 6 HOH A 197 897 206 HOH HOH . G 6 HOH C 1 101 138 HOH HOH . G 6 HOH C 2 102 9 HOH HOH . G 6 HOH C 3 103 47 HOH HOH . G 6 HOH C 4 104 77 HOH HOH . G 6 HOH C 5 105 99 HOH HOH . G 6 HOH C 6 106 129 HOH HOH . G 6 HOH C 7 107 169 HOH HOH . G 6 HOH C 8 108 176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -1.065 _atom_site.Cartn_y -2.356 _atom_site.Cartn_z 26.359 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.4 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #