data_4I2H # _model_server_result.job_id Ne8o8Nsl-rdif9WqmuO3og _model_server_result.datetime_utc '2024-11-24 06:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4I2H # _exptl.entry_id 4I2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I2H _cell.length_a 47.112 _cell.length_b 85.264 _cell.length_c 115.085 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 143 A THR 253 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A O VAL 145 A VAL 255 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc3 A O VAL 148 A VAL 258 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A OD1 ASP 233 A ASP 343 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 A OD2 ASP 233 A ASP 343 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 A OD2 ASP 235 A ASP 345 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 A OD1 ASP 235 A ASP 345 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 A OD2 ASP 324 A ASP 434 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc9 A OD2 ASP 363 A ASP 473 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc10 A ND1 HIS 365 A HIS 475 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc11 C MG MG . A MG 601 1_555 G O3B APC . A APC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc12 C MG MG . A MG 601 1_555 G O1A APC . A APC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc13 C MG MG . A MG 601 1_555 H O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc14 D NA NA . A NA 602 1_555 B OP1 DA 2 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc15 E ZN ZN . A ZN 603 1_555 G O1A APC . A APC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4I2H _atom_sites.fract_transf_matrix[1][1] 0.021226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 601 1 MG MG . D 4 NA A 1 602 1 NA NA . E 5 ZN A 1 603 1 ZN ZN . F 5 ZN A 1 604 2 ZN ZN . G 6 APC A 1 605 1 APC APC . H 7 HOH A 1 701 1 HOH HOH . H 7 HOH A 2 702 2 HOH HOH . H 7 HOH A 3 703 3 HOH HOH . H 7 HOH A 4 704 4 HOH HOH . H 7 HOH A 5 705 5 HOH HOH . H 7 HOH A 6 706 6 HOH HOH . H 7 HOH A 7 707 7 HOH HOH . H 7 HOH A 8 708 8 HOH HOH . H 7 HOH A 9 709 9 HOH HOH . H 7 HOH A 10 710 10 HOH HOH . H 7 HOH A 11 711 11 HOH HOH . H 7 HOH A 12 712 12 HOH HOH . H 7 HOH A 13 713 13 HOH HOH . H 7 HOH A 14 714 14 HOH HOH . H 7 HOH A 15 715 15 HOH HOH . H 7 HOH A 16 716 16 HOH HOH . H 7 HOH A 17 717 17 HOH HOH . H 7 HOH A 18 718 18 HOH HOH . H 7 HOH A 19 719 19 HOH HOH . H 7 HOH A 20 720 20 HOH HOH . H 7 HOH A 21 721 21 HOH HOH . H 7 HOH A 22 722 22 HOH HOH . H 7 HOH A 23 723 23 HOH HOH . H 7 HOH A 24 724 24 HOH HOH . H 7 HOH A 25 725 25 HOH HOH . H 7 HOH A 26 726 26 HOH HOH . H 7 HOH A 27 727 27 HOH HOH . H 7 HOH A 28 728 28 HOH HOH . H 7 HOH A 29 729 29 HOH HOH . H 7 HOH A 30 730 30 HOH HOH . H 7 HOH A 31 731 31 HOH HOH . H 7 HOH A 32 732 32 HOH HOH . H 7 HOH A 33 733 34 HOH HOH . H 7 HOH A 34 734 35 HOH HOH . H 7 HOH A 35 735 36 HOH HOH . H 7 HOH A 36 736 37 HOH HOH . H 7 HOH A 37 737 38 HOH HOH . H 7 HOH A 38 738 39 HOH HOH . H 7 HOH A 39 739 40 HOH HOH . H 7 HOH A 40 740 41 HOH HOH . H 7 HOH A 41 741 42 HOH HOH . H 7 HOH A 42 742 43 HOH HOH . H 7 HOH A 43 743 44 HOH HOH . H 7 HOH A 44 744 45 HOH HOH . H 7 HOH A 45 745 46 HOH HOH . H 7 HOH A 46 746 47 HOH HOH . H 7 HOH A 47 747 48 HOH HOH . H 7 HOH A 48 748 49 HOH HOH . H 7 HOH A 49 749 50 HOH HOH . H 7 HOH A 50 750 51 HOH HOH . H 7 HOH A 51 751 52 HOH HOH . H 7 HOH A 52 752 53 HOH HOH . H 7 HOH A 53 753 54 HOH HOH . H 7 HOH A 54 754 55 HOH HOH . H 7 HOH A 55 755 56 HOH HOH . H 7 HOH A 56 756 57 HOH HOH . H 7 HOH A 57 757 58 HOH HOH . H 7 HOH A 58 758 59 HOH HOH . H 7 HOH A 59 759 60 HOH HOH . H 7 HOH A 60 760 61 HOH HOH . H 7 HOH A 61 761 62 HOH HOH . H 7 HOH A 62 762 63 HOH HOH . H 7 HOH A 63 763 64 HOH HOH . H 7 HOH A 64 764 65 HOH HOH . H 7 HOH A 65 765 66 HOH HOH . H 7 HOH A 66 766 67 HOH HOH . H 7 HOH A 67 767 68 HOH HOH . H 7 HOH A 68 768 69 HOH HOH . H 7 HOH A 69 769 70 HOH HOH . H 7 HOH A 70 770 71 HOH HOH . H 7 HOH A 71 771 72 HOH HOH . H 7 HOH A 72 772 73 HOH HOH . H 7 HOH A 73 773 74 HOH HOH . H 7 HOH A 74 774 75 HOH HOH . H 7 HOH A 75 775 76 HOH HOH . H 7 HOH A 76 776 77 HOH HOH . H 7 HOH A 77 777 78 HOH HOH . H 7 HOH A 78 778 79 HOH HOH . H 7 HOH A 79 779 80 HOH HOH . H 7 HOH A 80 780 81 HOH HOH . H 7 HOH A 81 781 82 HOH HOH . H 7 HOH A 82 782 83 HOH HOH . H 7 HOH A 83 783 84 HOH HOH . H 7 HOH A 84 784 85 HOH HOH . H 7 HOH A 85 785 86 HOH HOH . H 7 HOH A 86 786 87 HOH HOH . H 7 HOH A 87 787 88 HOH HOH . H 7 HOH A 88 788 89 HOH HOH . H 7 HOH A 89 789 90 HOH HOH . H 7 HOH A 90 790 91 HOH HOH . H 7 HOH A 91 791 93 HOH HOH . H 7 HOH A 92 792 94 HOH HOH . H 7 HOH A 93 793 95 HOH HOH . H 7 HOH A 94 794 96 HOH HOH . H 7 HOH A 95 795 97 HOH HOH . H 7 HOH A 96 796 98 HOH HOH . H 7 HOH A 97 797 99 HOH HOH . H 7 HOH A 98 798 100 HOH HOH . H 7 HOH A 99 799 101 HOH HOH . H 7 HOH A 100 800 102 HOH HOH . H 7 HOH A 101 801 103 HOH HOH . H 7 HOH A 102 802 104 HOH HOH . H 7 HOH A 103 803 105 HOH HOH . H 7 HOH A 104 804 106 HOH HOH . H 7 HOH A 105 805 107 HOH HOH . H 7 HOH A 106 806 108 HOH HOH . H 7 HOH A 107 807 109 HOH HOH . H 7 HOH A 108 808 110 HOH HOH . H 7 HOH A 109 809 111 HOH HOH . H 7 HOH A 110 810 112 HOH HOH . H 7 HOH A 111 811 113 HOH HOH . H 7 HOH A 112 812 114 HOH HOH . H 7 HOH A 113 813 115 HOH HOH . H 7 HOH A 114 814 116 HOH HOH . H 7 HOH A 115 815 117 HOH HOH . H 7 HOH A 116 816 118 HOH HOH . H 7 HOH A 117 817 119 HOH HOH . H 7 HOH A 118 818 120 HOH HOH . H 7 HOH A 119 819 121 HOH HOH . H 7 HOH A 120 820 122 HOH HOH . H 7 HOH A 121 821 123 HOH HOH . H 7 HOH A 122 822 124 HOH HOH . H 7 HOH A 123 823 125 HOH HOH . H 7 HOH A 124 824 126 HOH HOH . H 7 HOH A 125 825 127 HOH HOH . H 7 HOH A 126 826 128 HOH HOH . H 7 HOH A 127 827 129 HOH HOH . H 7 HOH A 128 828 130 HOH HOH . H 7 HOH A 129 829 131 HOH HOH . H 7 HOH A 130 830 132 HOH HOH . H 7 HOH A 131 831 133 HOH HOH . H 7 HOH A 132 832 134 HOH HOH . H 7 HOH A 133 833 135 HOH HOH . H 7 HOH A 134 834 136 HOH HOH . H 7 HOH A 135 835 137 HOH HOH . H 7 HOH A 136 836 138 HOH HOH . H 7 HOH A 137 837 139 HOH HOH . H 7 HOH A 138 838 140 HOH HOH . H 7 HOH A 139 839 141 HOH HOH . H 7 HOH A 140 840 142 HOH HOH . H 7 HOH A 141 841 143 HOH HOH . H 7 HOH A 142 842 144 HOH HOH . H 7 HOH A 143 843 145 HOH HOH . H 7 HOH A 144 844 146 HOH HOH . H 7 HOH A 145 845 147 HOH HOH . H 7 HOH A 146 846 148 HOH HOH . H 7 HOH A 147 847 149 HOH HOH . H 7 HOH A 148 848 150 HOH HOH . H 7 HOH A 149 849 151 HOH HOH . H 7 HOH A 150 850 152 HOH HOH . H 7 HOH A 151 851 153 HOH HOH . H 7 HOH A 152 852 154 HOH HOH . I 7 HOH C 1 101 33 HOH HOH . I 7 HOH C 2 102 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 15.86 _atom_site.Cartn_y -21.298 _atom_site.Cartn_z -25.762 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 102.48 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #