data_4I33 # _model_server_result.job_id p5-fsAR-MNYvPdtJQdjMoQ _model_server_result.datetime_utc '2024-11-22 08:44:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4I33 # _exptl.entry_id 4I33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I33 _cell.length_a 93.527 _cell.length_b 93.527 _cell.length_c 81.449 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 47 1_555 A SG CYS 53 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 98 A CYS 97 1_555 A SG CYS 146 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 48 B CYS 47 1_555 B SG CYS 53 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 98 B CYS 97 1_555 B SG CYS 146 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A O ALA 112 A ALA 111 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 B O ALA 112 B ALA 111 1_555 G NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc3 A O ALA 6 A ALA 5 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc4 B O ALA 6 B ALA 5 1_555 G NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc5 E NA NA . A NA 201 1_555 I O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc6 E NA NA . A NA 201 1_555 I O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc7 G NA NA . B NA 201 1_555 J O HOH . B HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc8 G NA NA . B NA 201 1_555 J O HOH . B HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc9 E NA NA . A NA 201 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc10 E NA NA . A NA 201 1_555 I O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc11 G NA NA . B NA 201 1_555 J O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc12 G NA NA . B NA 201 1_555 J O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4I33 _atom_sites.fract_transf_matrix[1][1] 0.010692 _atom_sites.fract_transf_matrix[1][2] 0.006173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 201 1 NA NA . F 4 1BV A 1 202 1 1BV INH . G 3 NA B 1 201 2 NA NA . H 4 1BV B 1 202 2 1BV INH . I 5 HOH A 1 301 2 HOH HOH . I 5 HOH A 2 302 5 HOH HOH . I 5 HOH A 3 303 6 HOH HOH . I 5 HOH A 4 304 7 HOH HOH . I 5 HOH A 5 305 8 HOH HOH . I 5 HOH A 6 306 9 HOH HOH . I 5 HOH A 7 307 11 HOH HOH . I 5 HOH A 8 308 12 HOH HOH . I 5 HOH A 9 309 15 HOH HOH . I 5 HOH A 10 310 18 HOH HOH . I 5 HOH A 11 311 19 HOH HOH . I 5 HOH A 12 312 21 HOH HOH . I 5 HOH A 13 313 23 HOH HOH . I 5 HOH A 14 314 24 HOH HOH . I 5 HOH A 15 315 25 HOH HOH . I 5 HOH A 16 316 26 HOH HOH . I 5 HOH A 17 317 29 HOH HOH . I 5 HOH A 18 318 30 HOH HOH . I 5 HOH A 19 319 31 HOH HOH . I 5 HOH A 20 320 33 HOH HOH . I 5 HOH A 21 321 34 HOH HOH . I 5 HOH A 22 322 37 HOH HOH . I 5 HOH A 23 323 40 HOH HOH . I 5 HOH A 24 324 41 HOH HOH . I 5 HOH A 25 325 42 HOH HOH . I 5 HOH A 26 326 43 HOH HOH . I 5 HOH A 27 327 45 HOH HOH . I 5 HOH A 28 328 47 HOH HOH . I 5 HOH A 29 329 48 HOH HOH . I 5 HOH A 30 330 49 HOH HOH . I 5 HOH A 31 331 51 HOH HOH . I 5 HOH A 32 332 52 HOH HOH . I 5 HOH A 33 333 57 HOH HOH . I 5 HOH A 34 334 60 HOH HOH . I 5 HOH A 35 335 61 HOH HOH . I 5 HOH A 36 336 62 HOH HOH . I 5 HOH A 37 337 63 HOH HOH . I 5 HOH A 38 338 64 HOH HOH . I 5 HOH A 39 339 65 HOH HOH . I 5 HOH A 40 340 71 HOH HOH . I 5 HOH A 41 341 72 HOH HOH . I 5 HOH A 42 342 75 HOH HOH . I 5 HOH A 43 343 77 HOH HOH . I 5 HOH A 44 344 78 HOH HOH . I 5 HOH A 45 345 80 HOH HOH . I 5 HOH A 46 346 81 HOH HOH . I 5 HOH A 47 347 82 HOH HOH . I 5 HOH A 48 348 86 HOH HOH . I 5 HOH A 49 349 87 HOH HOH . I 5 HOH A 50 350 88 HOH HOH . I 5 HOH A 51 351 90 HOH HOH . I 5 HOH A 52 352 92 HOH HOH . I 5 HOH A 53 353 93 HOH HOH . I 5 HOH A 54 354 94 HOH HOH . I 5 HOH A 55 355 96 HOH HOH . I 5 HOH A 56 356 98 HOH HOH . I 5 HOH A 57 357 100 HOH HOH . I 5 HOH A 58 358 101 HOH HOH . I 5 HOH A 59 359 102 HOH HOH . I 5 HOH A 60 360 104 HOH HOH . I 5 HOH A 61 361 105 HOH HOH . I 5 HOH A 62 362 106 HOH HOH . I 5 HOH A 63 363 110 HOH HOH . I 5 HOH A 64 364 114 HOH HOH . I 5 HOH A 65 365 116 HOH HOH . I 5 HOH A 66 366 118 HOH HOH . I 5 HOH A 67 367 123 HOH HOH . I 5 HOH A 68 368 124 HOH HOH . I 5 HOH A 69 369 125 HOH HOH . J 5 HOH B 1 301 1 HOH HOH . J 5 HOH B 2 302 3 HOH HOH . J 5 HOH B 3 303 4 HOH HOH . J 5 HOH B 4 304 10 HOH HOH . J 5 HOH B 5 305 13 HOH HOH . J 5 HOH B 6 306 14 HOH HOH . J 5 HOH B 7 307 16 HOH HOH . J 5 HOH B 8 308 17 HOH HOH . J 5 HOH B 9 309 22 HOH HOH . J 5 HOH B 10 310 27 HOH HOH . J 5 HOH B 11 311 28 HOH HOH . J 5 HOH B 12 312 32 HOH HOH . J 5 HOH B 13 313 35 HOH HOH . J 5 HOH B 14 314 36 HOH HOH . J 5 HOH B 15 315 38 HOH HOH . J 5 HOH B 16 316 39 HOH HOH . J 5 HOH B 17 317 44 HOH HOH . J 5 HOH B 18 318 53 HOH HOH . J 5 HOH B 19 319 54 HOH HOH . J 5 HOH B 20 320 55 HOH HOH . J 5 HOH B 21 321 56 HOH HOH . J 5 HOH B 22 322 58 HOH HOH . J 5 HOH B 23 323 59 HOH HOH . J 5 HOH B 24 324 66 HOH HOH . J 5 HOH B 25 325 67 HOH HOH . J 5 HOH B 26 326 68 HOH HOH . J 5 HOH B 27 327 69 HOH HOH . J 5 HOH B 28 328 73 HOH HOH . J 5 HOH B 29 329 74 HOH HOH . J 5 HOH B 30 330 76 HOH HOH . J 5 HOH B 31 331 83 HOH HOH . J 5 HOH B 32 332 84 HOH HOH . J 5 HOH B 33 333 85 HOH HOH . J 5 HOH B 34 334 89 HOH HOH . J 5 HOH B 35 335 91 HOH HOH . J 5 HOH B 36 336 95 HOH HOH . J 5 HOH B 37 337 97 HOH HOH . J 5 HOH B 38 338 99 HOH HOH . J 5 HOH B 39 339 103 HOH HOH . J 5 HOH B 40 340 107 HOH HOH . J 5 HOH B 41 341 108 HOH HOH . J 5 HOH B 42 342 109 HOH HOH . J 5 HOH B 43 343 111 HOH HOH . J 5 HOH B 44 344 112 HOH HOH . J 5 HOH B 45 345 113 HOH HOH . J 5 HOH B 46 346 115 HOH HOH . J 5 HOH B 47 347 117 HOH HOH . J 5 HOH B 48 348 119 HOH HOH . J 5 HOH B 49 349 120 HOH HOH . J 5 HOH B 50 350 121 HOH HOH . J 5 HOH B 51 351 122 HOH HOH . K 5 HOH C 1 301 20 HOH HOH . K 5 HOH C 2 302 46 HOH HOH . K 5 HOH C 3 303 70 HOH HOH . L 5 HOH D 1 301 50 HOH HOH . L 5 HOH D 2 302 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 70.124 _atom_site.Cartn_y 26.69 _atom_site.Cartn_z 6.64 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #