data_4I3E
#
_model_server_result.job_id            EjEK91ckABnUJs0IwQbwgA 
_model_server_result.datetime_utc      '2024-11-06 00:15:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    4I3E 
#
_exptl.entry_id    4I3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4I3E 
_cell.length_a            60.327 
_cell.length_b            62.51 
_cell.length_c            140.925 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 76 A GLU 70 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc2 A OE2 GLU 76 A GLU 70 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc3 A OD2 ASP 94 A ASP 88 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 A OD1 ASP 94 A ASP 88 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
metalc ? metalc5 A O ILE 96 A ILE 90 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc6 A OD1 ASP 97 A ASP 91 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 A OD1 ASP 215 A ASP 209 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc8 C MG MG . A MG 301 1_555 D O1 PO4 . A PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc9 C MG MG . A MG 301 1_555 D O4 PO4 . A PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? 
metalc ? metalc10 C MG MG . A MG 301 1_555 M O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc11 C MG MG . A MG 301 1_555 M O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc12 C MG MG . A MG 301 1_555 M O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc13 D O4 PO4 . A PO4 302 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc14 D O3 PO4 . A PO4 302 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc15 E O2 GOL . A GOL 303 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc16 F MG MG . A MG 304 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc17 G MG MG . A MG 305 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc18 B OE1 GLU 76 B GLU 70 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc19 B OE2 GLU 76 B GLU 70 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc20 B OD2 ASP 94 B ASP 88 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc21 B OD1 ASP 94 B ASP 88 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc22 B O ILE 96 B ILE 90 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc23 B OD1 ASP 97 B ASP 91 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc24 B OD1 ASP 215 B ASP 209 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc25 H O2 PO4 . B PO4 301 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc26 H O4 PO4 . B PO4 301 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc27 H O1 PO4 . B PO4 301 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? 
metalc ? metalc28 H O4 PO4 . B PO4 301 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc29 H O1 PO4 . B PO4 301 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc30 I MG MG . B MG 302 1_555 N O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc31 I MG MG . B MG 302 1_555 N O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc32 J O2 GOL . B GOL 303 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc33 L MG MG . B MG 305 1_555 N O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4I3E 
_atom_sites.fract_transf_matrix[1][1]    0.016576 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015997 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 301 1 MG MG . 
D 3 PO4 A 1 302 1 PO4 PO4 . 
E 4 GOL A 1 303 1 GOL GOL . 
F 2 MG A 1 304 1 MG MG . 
G 2 MG A 1 305 1 MG MG . 
H 3 PO4 B 1 301 2 PO4 PO4 . 
I 2 MG B 1 302 1 MG MG . 
J 4 GOL B 1 303 1 GOL GOL . 
K 2 MG B 1 304 1 MG MG . 
L 2 MG B 1 305 1 MG MG . 
M 5 HOH A 1 401 6 HOH HOH . 
M 5 HOH A 2 402 7 HOH HOH . 
M 5 HOH A 3 403 8 HOH HOH . 
M 5 HOH A 4 404 9 HOH HOH . 
M 5 HOH A 5 405 10 HOH HOH . 
M 5 HOH A 6 406 11 HOH HOH . 
M 5 HOH A 7 407 13 HOH HOH . 
M 5 HOH A 8 408 14 HOH HOH . 
M 5 HOH A 9 409 15 HOH HOH . 
M 5 HOH A 10 410 16 HOH HOH . 
M 5 HOH A 11 411 17 HOH HOH . 
M 5 HOH A 12 412 21 HOH HOH . 
M 5 HOH A 13 413 24 HOH HOH . 
M 5 HOH A 14 414 28 HOH HOH . 
M 5 HOH A 15 415 31 HOH HOH . 
M 5 HOH A 16 416 33 HOH HOH . 
M 5 HOH A 17 417 34 HOH HOH . 
M 5 HOH A 18 418 38 HOH HOH . 
M 5 HOH A 19 419 44 HOH HOH . 
M 5 HOH A 20 420 45 HOH HOH . 
M 5 HOH A 21 421 48 HOH HOH . 
M 5 HOH A 22 422 50 HOH HOH . 
M 5 HOH A 23 423 52 HOH HOH . 
M 5 HOH A 24 424 55 HOH HOH . 
M 5 HOH A 25 425 57 HOH HOH . 
M 5 HOH A 26 426 60 HOH HOH . 
M 5 HOH A 27 427 62 HOH HOH . 
M 5 HOH A 28 428 64 HOH HOH . 
M 5 HOH A 29 429 65 HOH HOH . 
M 5 HOH A 30 430 66 HOH HOH . 
M 5 HOH A 31 431 68 HOH HOH . 
M 5 HOH A 32 432 70 HOH HOH . 
M 5 HOH A 33 433 72 HOH HOH . 
M 5 HOH A 34 434 74 HOH HOH . 
M 5 HOH A 35 435 76 HOH HOH . 
M 5 HOH A 36 436 77 HOH HOH . 
M 5 HOH A 37 437 79 HOH HOH . 
M 5 HOH A 38 438 82 HOH HOH . 
M 5 HOH A 39 439 86 HOH HOH . 
M 5 HOH A 40 440 91 HOH HOH . 
M 5 HOH A 41 441 92 HOH HOH . 
M 5 HOH A 42 442 93 HOH HOH . 
M 5 HOH A 43 443 95 HOH HOH . 
M 5 HOH A 44 444 98 HOH HOH . 
M 5 HOH A 45 445 100 HOH HOH . 
M 5 HOH A 46 446 102 HOH HOH . 
M 5 HOH A 47 447 104 HOH HOH . 
M 5 HOH A 48 448 106 HOH HOH . 
M 5 HOH A 49 449 107 HOH HOH . 
M 5 HOH A 50 450 109 HOH HOH . 
M 5 HOH A 51 451 110 HOH HOH . 
N 5 HOH B 1 401 1 HOH HOH . 
N 5 HOH B 2 402 3 HOH HOH . 
N 5 HOH B 3 403 4 HOH HOH . 
N 5 HOH B 4 404 18 HOH HOH . 
N 5 HOH B 5 405 19 HOH HOH . 
N 5 HOH B 6 406 20 HOH HOH . 
N 5 HOH B 7 407 22 HOH HOH . 
N 5 HOH B 8 408 23 HOH HOH . 
N 5 HOH B 9 409 25 HOH HOH . 
N 5 HOH B 10 410 26 HOH HOH . 
N 5 HOH B 11 411 27 HOH HOH . 
N 5 HOH B 12 412 29 HOH HOH . 
N 5 HOH B 13 413 30 HOH HOH . 
N 5 HOH B 14 414 32 HOH HOH . 
N 5 HOH B 15 415 35 HOH HOH . 
N 5 HOH B 16 416 36 HOH HOH . 
N 5 HOH B 17 417 37 HOH HOH . 
N 5 HOH B 18 418 40 HOH HOH . 
N 5 HOH B 19 419 42 HOH HOH . 
N 5 HOH B 20 420 43 HOH HOH . 
N 5 HOH B 21 421 46 HOH HOH . 
N 5 HOH B 22 422 47 HOH HOH . 
N 5 HOH B 23 423 49 HOH HOH . 
N 5 HOH B 24 424 51 HOH HOH . 
N 5 HOH B 25 425 53 HOH HOH . 
N 5 HOH B 26 426 54 HOH HOH . 
N 5 HOH B 27 427 56 HOH HOH . 
N 5 HOH B 28 428 58 HOH HOH . 
N 5 HOH B 29 429 61 HOH HOH . 
N 5 HOH B 30 430 67 HOH HOH . 
N 5 HOH B 31 431 69 HOH HOH . 
N 5 HOH B 32 432 71 HOH HOH . 
N 5 HOH B 33 433 73 HOH HOH . 
N 5 HOH B 34 434 75 HOH HOH . 
N 5 HOH B 35 435 78 HOH HOH . 
N 5 HOH B 36 436 80 HOH HOH . 
N 5 HOH B 37 437 81 HOH HOH . 
N 5 HOH B 38 438 83 HOH HOH . 
N 5 HOH B 39 439 84 HOH HOH . 
N 5 HOH B 40 440 85 HOH HOH . 
N 5 HOH B 41 441 87 HOH HOH . 
N 5 HOH B 42 442 88 HOH HOH . 
N 5 HOH B 43 443 89 HOH HOH . 
N 5 HOH B 44 444 90 HOH HOH . 
N 5 HOH B 45 445 94 HOH HOH . 
N 5 HOH B 46 446 97 HOH HOH . 
N 5 HOH B 47 447 99 HOH HOH . 
N 5 HOH B 48 448 101 HOH HOH . 
N 5 HOH B 49 449 103 HOH HOH . 
N 5 HOH B 50 450 105 HOH HOH . 
N 5 HOH B 51 451 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 3.451 22.933 14.738 1 35.3 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . E 4 4.618 22.387 14.124 1 35.1 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . E 4 3.737 24.269 15.387 1 34.29 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . E 4 2.579 24.694 16.082 1 36.08 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . E 4 4.835 24.151 16.418 1 34.39 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . E 4 5.883 23.324 15.926 1 34.72 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#