data_4I3K # _model_server_result.job_id BOda7t02H-xTjx55CWAFyw _model_server_result.datetime_utc '2025-01-12 19:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4I3K # _exptl.entry_id 4I3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I3K _cell.length_a 82.855 _cell.length_b 82.855 _cell.length_c 304.039 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 266 n n PA O2A NDP sing 267 n n PA O5B NDP sing 268 n n PA O3 NDP sing 269 n n O2A HOA2 NDP sing 270 n n O5B C5B NDP sing 271 n n C5B C4B NDP sing 272 n n C5B H51A NDP sing 273 n n C5B H52A NDP sing 274 n n C4B O4B NDP sing 275 n n C4B C3B NDP sing 276 n n C4B H4B NDP sing 277 n n O4B C1B NDP sing 278 n n C3B O3B NDP sing 279 n n C3B C2B NDP sing 280 n n C3B H3B NDP sing 281 n n O3B HO3A NDP sing 282 n n C2B O2B NDP sing 283 n n C2B C1B NDP sing 284 n n C2B H2B NDP sing 285 n n O2B P2B NDP sing 286 n n C1B N9A NDP sing 287 n n C1B H1B NDP sing 288 n n N9A C8A NDP sing 289 n y N9A C4A NDP sing 290 n y C8A N7A NDP doub 291 n y C8A H8A NDP sing 292 n n N7A C5A NDP sing 293 n y C5A C6A NDP sing 294 n y C5A C4A NDP doub 295 n y C6A N6A NDP sing 296 n n C6A N1A NDP doub 297 n y N6A H61A NDP sing 298 n n N6A H62A NDP sing 299 n n N1A C2A NDP sing 300 n y C2A N3A NDP doub 301 n y C2A H2A NDP sing 302 n n N3A C4A NDP sing 303 n y O3 PN NDP sing 304 n n PN O1N NDP doub 305 n n PN O2N NDP sing 306 n n PN O5D NDP sing 307 n n O2N H21N NDP sing 308 n n O5D C5D NDP sing 309 n n C5D C4D NDP sing 310 n n C5D H51N NDP sing 311 n n C5D H52N NDP sing 312 n n C4D O4D NDP sing 313 n n C4D C3D NDP sing 314 n n C4D H4D NDP sing 315 n n O4D C1D NDP sing 316 n n C3D O3D NDP sing 317 n n C3D C2D NDP sing 318 n n C3D H3D NDP sing 319 n n O3D HO3N NDP sing 320 n n C2D O2D NDP sing 321 n n C2D C1D NDP sing 322 n n C2D H2D NDP sing 323 n n O2D HO2N NDP sing 324 n n C1D N1N NDP sing 325 n n C1D H1D NDP sing 326 n n N1N C2N NDP sing 327 n n N1N C6N NDP sing 328 n n C2N C3N NDP doub 329 n n C2N H2N NDP sing 330 n n C3N C7N NDP sing 331 n n C3N C4N NDP sing 332 n n C7N O7N NDP doub 333 n n C7N N7N NDP sing 334 n n N7N H71N NDP sing 335 n n N7N H72N NDP sing 336 n n C4N C5N NDP sing 337 n n C4N H41N NDP sing 338 n n C4N H42N NDP sing 339 n n C5N C6N NDP doub 340 n n C5N H5N NDP sing 341 n n C6N H6N NDP sing 342 n n P2B O1X NDP doub 343 n n P2B O2X NDP sing 344 n n P2B O3X NDP sing 345 n n O2X HOP2 NDP sing 346 n n O3X HOP3 NDP sing 347 n n # _atom_sites.entry_id 4I3K _atom_sites.fract_transf_matrix[1][1] 0.012069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 SO4 A 1 502 700 SO4 SO4 . E 3 SO4 A 1 503 701 SO4 SO4 . F 3 SO4 A 1 504 704 SO4 SO4 . G 4 1BX A 1 505 1 1BX 1BX . H 2 NDP B 1 501 502 NDP NDP . I 3 SO4 B 1 502 702 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 28.987 -16.574 -14.417 1 14.35 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . C 2 30.072 -15.813 -13.721 1 10.85 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . C 2 28.683 -15.762 -15.579 1 13.91 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . C 2 27.673 -16.697 -13.532 1 26.37 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . C 2 27.275 -18.067 -13.247 1 17.62 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . C 2 25.893 -18.085 -12.699 1 13.08 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . C 2 25.458 -16.757 -12.193 1 13.28 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . C 2 25.003 -18.411 -13.794 1 13.62 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . C 2 24.977 -19.839 -14.003 1 12.76 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . C 2 23.734 -17.845 -13.308 1 18.05 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . C 2 23.249 -18.68 -12.24 1 18.27 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . C 2 24.138 -16.528 -12.761 1 19.79 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . C 2 24.205 -15.541 -13.802 1 25.88 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . C 2 25.277 -14.69 -14.144 1 13.55 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . C 2 24.938 -13.907 -15.196 1 7.49 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . C 2 23.615 -14.23 -15.576 1 5.78 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . C 2 22.699 -13.785 -16.567 1 6.9 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . C 2 23.065 -12.74 -17.518 1 10.53 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . C 2 21.461 -14.374 -16.609 1 7.62 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . C 2 21.092 -15.341 -15.757 1 11.26 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . C 2 21.89 -15.799 -14.813 1 13.01 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . C 2 23.151 -15.294 -14.666 1 14.71 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . C 2 29.377 -18.071 -14.815 1 10.48 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . C 2 30.823 -18.689 -14.572 1 26.89 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . C 2 31.51 -18.176 -13.353 1 15.11 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . C 2 30.699 -20.143 -14.3 1 20.51 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . C 2 31.741 -18.352 -15.842 1 33.76 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . C 2 32.331 -19.381 -16.666 1 21.2 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . C 2 33.455 -18.799 -17.43 1 16.32 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . C 2 33.209 -17.339 -17.588 1 19.65 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . C 2 34.767 -18.96 -16.711 1 29.65 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . C 2 35.695 -19.808 -17.435 1 15.84 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . C 2 35.285 -17.606 -16.494 1 27.23 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . C 2 36.733 -17.49 -16.639 1 15.92 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . C 2 34.578 -16.779 -17.503 1 26.55 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . C 2 34.607 -15.405 -17.174 1 34.36 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . C 2 35.087 -14.509 -18.121 1 19.66 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . C 2 34.914 -13.133 -18.023 1 25.24 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . C 2 35.51 -12.3 -19.151 1 29.26 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . C 2 34.991 -11.246 -19.515 1 26.56 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . C 2 36.698 -12.81 -19.786 1 24.08 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . C 2 34.149 -12.475 -16.835 1 33.06 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . C 2 33.987 -13.594 -15.757 1 37.07 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . C 2 34.203 -14.941 -15.941 1 42.68 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . C 2 22.185 -19.787 -12.56 1 30.04 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . C 2 21.433 -20.256 -11.351 1 30.47 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . C 2 21.164 -19.336 -13.546 1 14.2 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . C 2 22.749 -21.059 -13.102 1 22.7 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #