data_4I3K
#
_model_server_result.job_id            mZVwpLFO96dlkVArXi93HA 
_model_server_result.datetime_utc      '2025-01-12 19:33:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    4I3K 
#
_exptl.entry_id    4I3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4I3K 
_cell.length_a            82.855 
_cell.length_b            82.855 
_cell.length_c            304.039 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 266 n n 
PA O2A NDP sing 267 n n 
PA O5B NDP sing 268 n n 
PA O3 NDP sing 269 n n 
O2A HOA2 NDP sing 270 n n 
O5B C5B NDP sing 271 n n 
C5B C4B NDP sing 272 n n 
C5B H51A NDP sing 273 n n 
C5B H52A NDP sing 274 n n 
C4B O4B NDP sing 275 n n 
C4B C3B NDP sing 276 n n 
C4B H4B NDP sing 277 n n 
O4B C1B NDP sing 278 n n 
C3B O3B NDP sing 279 n n 
C3B C2B NDP sing 280 n n 
C3B H3B NDP sing 281 n n 
O3B HO3A NDP sing 282 n n 
C2B O2B NDP sing 283 n n 
C2B C1B NDP sing 284 n n 
C2B H2B NDP sing 285 n n 
O2B P2B NDP sing 286 n n 
C1B N9A NDP sing 287 n n 
C1B H1B NDP sing 288 n n 
N9A C8A NDP sing 289 n y 
N9A C4A NDP sing 290 n y 
C8A N7A NDP doub 291 n y 
C8A H8A NDP sing 292 n n 
N7A C5A NDP sing 293 n y 
C5A C6A NDP sing 294 n y 
C5A C4A NDP doub 295 n y 
C6A N6A NDP sing 296 n n 
C6A N1A NDP doub 297 n y 
N6A H61A NDP sing 298 n n 
N6A H62A NDP sing 299 n n 
N1A C2A NDP sing 300 n y 
C2A N3A NDP doub 301 n y 
C2A H2A NDP sing 302 n n 
N3A C4A NDP sing 303 n y 
O3 PN NDP sing 304 n n 
PN O1N NDP doub 305 n n 
PN O2N NDP sing 306 n n 
PN O5D NDP sing 307 n n 
O2N H21N NDP sing 308 n n 
O5D C5D NDP sing 309 n n 
C5D C4D NDP sing 310 n n 
C5D H51N NDP sing 311 n n 
C5D H52N NDP sing 312 n n 
C4D O4D NDP sing 313 n n 
C4D C3D NDP sing 314 n n 
C4D H4D NDP sing 315 n n 
O4D C1D NDP sing 316 n n 
C3D O3D NDP sing 317 n n 
C3D C2D NDP sing 318 n n 
C3D H3D NDP sing 319 n n 
O3D HO3N NDP sing 320 n n 
C2D O2D NDP sing 321 n n 
C2D C1D NDP sing 322 n n 
C2D H2D NDP sing 323 n n 
O2D HO2N NDP sing 324 n n 
C1D N1N NDP sing 325 n n 
C1D H1D NDP sing 326 n n 
N1N C2N NDP sing 327 n n 
N1N C6N NDP sing 328 n n 
C2N C3N NDP doub 329 n n 
C2N H2N NDP sing 330 n n 
C3N C7N NDP sing 331 n n 
C3N C4N NDP sing 332 n n 
C7N O7N NDP doub 333 n n 
C7N N7N NDP sing 334 n n 
N7N H71N NDP sing 335 n n 
N7N H72N NDP sing 336 n n 
C4N C5N NDP sing 337 n n 
C4N H41N NDP sing 338 n n 
C4N H42N NDP sing 339 n n 
C5N C6N NDP doub 340 n n 
C5N H5N NDP sing 341 n n 
C6N H6N NDP sing 342 n n 
P2B O1X NDP doub 343 n n 
P2B O2X NDP sing 344 n n 
P2B O3X NDP sing 345 n n 
O2X HOP2 NDP sing 346 n n 
O3X HOP3 NDP sing 347 n n 
#
_atom_sites.entry_id                     4I3K 
_atom_sites.fract_transf_matrix[1][1]    0.012069 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 501 501 NDP NDP . 
D 3 SO4 A 1 502 700 SO4 SO4 . 
E 3 SO4 A 1 503 701 SO4 SO4 . 
F 3 SO4 A 1 504 704 SO4 SO4 . 
G 4 1BX A 1 505 1 1BX 1BX . 
H 2 NDP B 1 501 502 NDP NDP . 
I 3 SO4 B 1 502 702 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . H 2 23.462 3.781 15.342 1 12.38 ? PA NDP 501 B 1 
HETATM 2 O O1A NDP . . . H 2 24.784 3.1 15.318 1 17.16 ? O1A NDP 501 B 1 
HETATM 3 O O2A NDP . . . H 2 23.033 3.519 16.707 1 9.86 ? O2A NDP 501 B 1 
HETATM 4 O O5B NDP . . . H 2 22.481 3.168 14.225 1 11.19 ? O5B NDP 501 B 1 
HETATM 5 C C5B NDP . . . H 2 22.194 4.047 13.096 1 11.97 ? C5B NDP 501 B 1 
HETATM 6 C C4B NDP . . . H 2 20.768 3.898 12.69 1 10.07 ? C4B NDP 501 B 1 
HETATM 7 O O4B NDP . . . H 2 20.425 2.472 12.728 1 11 ? O4B NDP 501 B 1 
HETATM 8 C C3B NDP . . . H 2 19.863 4.54 13.643 1 11.26 ? C3B NDP 501 B 1 
HETATM 9 O O3B NDP . . . H 2 19.637 5.921 13.289 1 18.4 ? O3B NDP 501 B 1 
HETATM 10 C C2B NDP . . . H 2 18.616 3.756 13.57 1 9.78 ? C2B NDP 501 B 1 
HETATM 11 O O2B NDP . . . H 2 17.856 4.056 12.375 1 14.59 ? O2B NDP 501 B 1 
HETATM 12 C C1B NDP . . . H 2 19.109 2.393 13.345 1 10.08 ? C1B NDP 501 B 1 
HETATM 13 N N9A NDP . . . H 2 19.146 1.616 14.528 1 9.42 ? N9A NDP 501 B 1 
HETATM 14 C C8A NDP . . . H 2 20.253 1.036 15.17 1 7.9 ? C8A NDP 501 B 1 
HETATM 15 N N7A NDP . . . H 2 19.836 0.342 16.258 1 5.58 ? N7A NDP 501 B 1 
HETATM 16 C C5A NDP . . . H 2 18.423 0.452 16.334 1 6.17 ? C5A NDP 501 B 1 
HETATM 17 C C6A NDP . . . H 2 17.394 -0.021 17.196 1 5.6 ? C6A NDP 501 B 1 
HETATM 18 N N6A NDP . . . H 2 17.709 -0.852 18.364 1 3.84 ? N6A NDP 501 B 1 
HETATM 19 N N1A NDP . . . H 2 16.1 0.353 16.877 1 6.16 ? N1A NDP 501 B 1 
HETATM 20 C C2A NDP . . . H 2 15.755 1.114 15.829 1 5.5 ? C2A NDP 501 B 1 
HETATM 21 N N3A NDP . . . H 2 16.663 1.571 14.998 1 7.5 ? N3A NDP 501 B 1 
HETATM 22 C C4A NDP . . . H 2 17.988 1.284 15.191 1 8.81 ? C4A NDP 501 B 1 
HETATM 23 O O3 NDP . . . H 2 23.607 5.348 15.103 1 18.57 ? O3 NDP 501 B 1 
HETATM 24 P PN NDP . . . H 2 24.98 6.13 15.302 1 23.54 ? PN NDP 501 B 1 
HETATM 25 O O1N NDP . . . H 2 26.166 5.329 14.889 1 19.79 ? O1N NDP 501 B 1 
HETATM 26 O O2N NDP . . . H 2 25.101 7.292 14.378 1 32.54 ? O2N NDP 501 B 1 
HETATM 27 O O5D NDP . . . H 2 25.046 6.584 16.824 1 20.4 ? O5D NDP 501 B 1 
HETATM 28 C C5D NDP . . . H 2 26.001 7.582 17.238 1 20.3 ? C5D NDP 501 B 1 
HETATM 29 C C4D NDP . . . H 2 26.921 7 18.24 1 25.63 ? C4D NDP 501 B 1 
HETATM 30 O O4D NDP . . . H 2 26.896 5.5 18.231 1 24.03 ? O4D NDP 501 B 1 
HETATM 31 C C3D NDP . . . H 2 28.338 7.409 17.967 1 26.17 ? C3D NDP 501 B 1 
HETATM 32 O O3D NDP . . . H 2 28.721 8.593 18.725 1 13.33 ? O3D NDP 501 B 1 
HETATM 33 C C2D NDP . . . H 2 29.166 6.216 18.223 1 21.36 ? C2D NDP 501 B 1 
HETATM 34 O O2D NDP . . . H 2 30.254 6.503 19.151 1 11.02 ? O2D NDP 501 B 1 
HETATM 35 C C1D NDP . . . H 2 28.243 5.147 18.745 1 22.82 ? C1D NDP 501 B 1 
HETATM 36 N N1N NDP . . . H 2 28.633 3.79 18.479 1 34.49 ? N1N NDP 501 B 1 
HETATM 37 C C2N NDP . . . H 2 28.964 2.958 19.556 1 26.93 ? C2N NDP 501 B 1 
HETATM 38 C C3N NDP . . . H 2 29.111 1.565 19.453 1 28.19 ? C3N NDP 501 B 1 
HETATM 39 C C7N NDP . . . H 2 29.473 0.813 20.738 1 19.14 ? C7N NDP 501 B 1 
HETATM 40 O O7N NDP . . . H 2 29.088 -0.331 20.937 1 14.66 ? O7N NDP 501 B 1 
HETATM 41 N N7N NDP . . . H 2 30.274 1.486 21.718 1 11.53 ? N7N NDP 501 B 1 
HETATM 42 C C4N NDP . . . H 2 28.908 0.797 18.103 1 26.43 ? C4N NDP 501 B 1 
HETATM 43 C C5N NDP . . . H 2 28.858 1.892 16.979 1 45.69 ? C5N NDP 501 B 1 
HETATM 44 C C6N NDP . . . H 2 28.716 3.258 17.2 1 43.36 ? C6N NDP 501 B 1 
HETATM 45 P P2B NDP . . . H 2 16.854 5.261 12.21 1 23.9 ? P2B NDP 501 B 1 
HETATM 46 O O1X NDP . . . H 2 15.574 4.87 11.549 1 28.31 ? O1X NDP 501 B 1 
HETATM 47 O O2X NDP . . . H 2 16.419 5.897 13.477 1 11.23 ? O2X NDP 501 B 1 
HETATM 48 O O3X NDP . . . H 2 17.37 6.358 11.323 1 14.1 ? O3X NDP 501 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#