data_4I3L # _model_server_result.job_id C8YajH3JXfVUT8JNuSbJ3g _model_server_result.datetime_utc '2025-01-12 19:15:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 4I3L # _exptl.entry_id 4I3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I3L _cell.length_a 80.853 _cell.length_b 80.853 _cell.length_c 304.836 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 265 n n PA O2A NDP sing 266 n n PA O5B NDP sing 267 n n PA O3 NDP sing 268 n n O2A HOA2 NDP sing 269 n n O5B C5B NDP sing 270 n n C5B C4B NDP sing 271 n n C5B H51A NDP sing 272 n n C5B H52A NDP sing 273 n n C4B O4B NDP sing 274 n n C4B C3B NDP sing 275 n n C4B H4B NDP sing 276 n n O4B C1B NDP sing 277 n n C3B O3B NDP sing 278 n n C3B C2B NDP sing 279 n n C3B H3B NDP sing 280 n n O3B HO3A NDP sing 281 n n C2B O2B NDP sing 282 n n C2B C1B NDP sing 283 n n C2B H2B NDP sing 284 n n O2B P2B NDP sing 285 n n C1B N9A NDP sing 286 n n C1B H1B NDP sing 287 n n N9A C8A NDP sing 288 n y N9A C4A NDP sing 289 n y C8A N7A NDP doub 290 n y C8A H8A NDP sing 291 n n N7A C5A NDP sing 292 n y C5A C6A NDP sing 293 n y C5A C4A NDP doub 294 n y C6A N6A NDP sing 295 n n C6A N1A NDP doub 296 n y N6A H61A NDP sing 297 n n N6A H62A NDP sing 298 n n N1A C2A NDP sing 299 n y C2A N3A NDP doub 300 n y C2A H2A NDP sing 301 n n N3A C4A NDP sing 302 n y O3 PN NDP sing 303 n n PN O1N NDP doub 304 n n PN O2N NDP sing 305 n n PN O5D NDP sing 306 n n O2N H21N NDP sing 307 n n O5D C5D NDP sing 308 n n C5D C4D NDP sing 309 n n C5D H51N NDP sing 310 n n C5D H52N NDP sing 311 n n C4D O4D NDP sing 312 n n C4D C3D NDP sing 313 n n C4D H4D NDP sing 314 n n O4D C1D NDP sing 315 n n C3D O3D NDP sing 316 n n C3D C2D NDP sing 317 n n C3D H3D NDP sing 318 n n O3D HO3N NDP sing 319 n n C2D O2D NDP sing 320 n n C2D C1D NDP sing 321 n n C2D H2D NDP sing 322 n n O2D HO2N NDP sing 323 n n C1D N1N NDP sing 324 n n C1D H1D NDP sing 325 n n N1N C2N NDP sing 326 n n N1N C6N NDP sing 327 n n C2N C3N NDP doub 328 n n C2N H2N NDP sing 329 n n C3N C7N NDP sing 330 n n C3N C4N NDP sing 331 n n C7N O7N NDP doub 332 n n C7N N7N NDP sing 333 n n N7N H71N NDP sing 334 n n N7N H72N NDP sing 335 n n C4N C5N NDP sing 336 n n C4N H41N NDP sing 337 n n C4N H42N NDP sing 338 n n C5N C6N NDP doub 339 n n C5N H5N NDP sing 340 n n C6N H6N NDP sing 341 n n P2B O1X NDP doub 342 n n P2B O2X NDP sing 343 n n P2B O3X NDP sing 344 n n O2X HOP2 NDP sing 345 n n O3X HOP3 NDP sing 346 n n # _atom_sites.entry_id 4I3L _atom_sites.fract_transf_matrix[1][1] 0.012368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 SO4 A 1 502 700 SO4 SO4 . E 3 SO4 A 1 503 704 SO4 SO4 . F 4 1BZ A 1 504 1 1BZ 1BZ . G 2 NDP B 1 501 502 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . G 2 17.123 -43.626 15.146 1 45.94 ? PA NDP 501 B 1 HETATM 2 O O1A NDP . . . G 2 15.867 -42.897 14.744 1 46.73 ? O1A NDP 501 B 1 HETATM 3 O O2A NDP . . . G 2 17.683 -43.43 16.52 1 44.99 ? O2A NDP 501 B 1 HETATM 4 O O5B NDP . . . G 2 18.257 -43.288 14.089 1 44.66 ? O5B NDP 501 B 1 HETATM 5 C C5B NDP . . . G 2 18.458 -44.267 13.077 1 42.56 ? C5B NDP 501 B 1 HETATM 6 C C4B NDP . . . G 2 19.878 -44.158 12.551 1 43.43 ? C4B NDP 501 B 1 HETATM 7 O O4B NDP . . . G 2 20.283 -42.79 12.382 1 43.24 ? O4B NDP 501 B 1 HETATM 8 C C3B NDP . . . G 2 20.92 -44.731 13.504 1 44 ? C3B NDP 501 B 1 HETATM 9 O O3B NDP . . . G 2 21.037 -46.156 13.412 1 45.38 ? O3B NDP 501 B 1 HETATM 10 C C2B NDP . . . G 2 22.186 -43.978 13.102 1 42.6 ? C2B NDP 501 B 1 HETATM 11 O O2B NDP . . . G 2 22.696 -44.37 11.822 1 42.06 ? O2B NDP 501 B 1 HETATM 12 C C1B NDP . . . G 2 21.617 -42.595 12.895 1 40.79 ? C1B NDP 501 B 1 HETATM 13 N N9A NDP . . . G 2 21.567 -41.801 14.157 1 37.96 ? N9A NDP 501 B 1 HETATM 14 C C8A NDP . . . G 2 20.445 -41.314 14.728 1 36.07 ? C8A NDP 501 B 1 HETATM 15 N N7A NDP . . . G 2 20.735 -40.617 15.851 1 35.44 ? N7A NDP 501 B 1 HETATM 16 C C5A NDP . . . G 2 22.059 -40.645 16.017 1 34.42 ? C5A NDP 501 B 1 HETATM 17 C C6A NDP . . . G 2 22.99 -40.096 17.008 1 33.35 ? C6A NDP 501 B 1 HETATM 18 N N6A NDP . . . G 2 22.525 -39.378 18.047 1 32.82 ? N6A NDP 501 B 1 HETATM 19 N N1A NDP . . . G 2 24.299 -40.349 16.832 1 33.85 ? N1A NDP 501 B 1 HETATM 20 C C2A NDP . . . G 2 24.74 -41.079 15.788 1 35.58 ? C2A NDP 501 B 1 HETATM 21 N N3A NDP . . . G 2 23.947 -41.609 14.831 1 35.79 ? N3A NDP 501 B 1 HETATM 22 C C4A NDP . . . G 2 22.611 -41.424 14.898 1 35.99 ? C4A NDP 501 B 1 HETATM 23 O O3 NDP . . . G 2 17.032 -45.198 14.822 1 49.7 ? O3 NDP 501 B 1 HETATM 24 P PN NDP . . . G 2 15.655 -46.007 14.989 1 57.01 ? PN NDP 501 B 1 HETATM 25 O O1N NDP . . . G 2 14.522 -45.206 14.384 1 57.05 ? O1N NDP 501 B 1 HETATM 26 O O2N NDP . . . G 2 15.852 -47.428 14.525 1 58.13 ? O2N NDP 501 B 1 HETATM 27 O O5D NDP . . . G 2 15.492 -46.06 16.594 1 58.33 ? O5D NDP 501 B 1 HETATM 28 C C5D NDP . . . G 2 14.973 -47.238 17.22 1 57.48 ? C5D NDP 501 B 1 HETATM 29 C C4D NDP . . . G 2 13.829 -46.915 18.18 1 58.53 ? C4D NDP 501 B 1 HETATM 30 O O4D NDP . . . G 2 13.751 -45.506 18.434 1 60.99 ? O4D NDP 501 B 1 HETATM 31 C C3D NDP . . . G 2 12.459 -47.357 17.666 1 58.41 ? C3D NDP 501 B 1 HETATM 32 O O3D NDP . . . G 2 11.937 -48.414 18.49 1 55.94 ? O3D NDP 501 B 1 HETATM 33 C C2D NDP . . . G 2 11.571 -46.119 17.716 1 58.71 ? C2D NDP 501 B 1 HETATM 34 O O2D NDP . . . G 2 10.316 -46.389 18.343 1 53.13 ? O2D NDP 501 B 1 HETATM 35 C C1D NDP . . . G 2 12.372 -45.128 18.554 1 63.13 ? C1D NDP 501 B 1 HETATM 36 N N1N NDP . . . G 2 12.154 -43.695 18.247 1 69.16 ? N1N NDP 501 B 1 HETATM 37 C C2N NDP . . . G 2 11.989 -42.894 19.315 1 69.23 ? C2N NDP 501 B 1 HETATM 38 C C3N NDP . . . G 2 11.778 -41.517 19.211 1 69.32 ? C3N NDP 501 B 1 HETATM 39 C C7N NDP . . . G 2 11.608 -40.739 20.499 1 69.43 ? C7N NDP 501 B 1 HETATM 40 O O7N NDP . . . G 2 12.229 -39.696 20.671 1 69.2 ? O7N NDP 501 B 1 HETATM 41 N N7N NDP . . . G 2 10.787 -41.212 21.445 1 66.24 ? N7N NDP 501 B 1 HETATM 42 C C4N NDP . . . G 2 11.726 -40.844 17.839 1 69.23 ? C4N NDP 501 B 1 HETATM 43 C C5N NDP . . . G 2 11.924 -41.81 16.746 1 70.1 ? C5N NDP 501 B 1 HETATM 44 C C6N NDP . . . G 2 12.131 -43.182 16.988 1 70.54 ? C6N NDP 501 B 1 HETATM 45 P P2B NDP . . . G 2 23.413 -45.784 11.549 1 43.57 ? P2B NDP 501 B 1 HETATM 46 O O1X NDP . . . G 2 24.295 -45.512 10.367 1 42.18 ? O1X NDP 501 B 1 HETATM 47 O O2X NDP . . . G 2 24.146 -46.032 12.853 1 44.01 ? O2X NDP 501 B 1 HETATM 48 O O3X NDP . . . G 2 22.334 -46.791 11.222 1 41.41 ? O3X NDP 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #