data_4I3L # _model_server_result.job_id oDZfll1ibq38fy3B-4-N9A _model_server_result.datetime_utc '2025-01-12 19:18:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 4I3L # _exptl.entry_id 4I3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.248 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-benzyl-1-hydroxy-4-methylpyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I3L _cell.length_a 80.853 _cell.length_b 80.853 _cell.length_c 304.836 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N O2' _chem_comp.formula_weight 215.248 _chem_comp.id 1BZ _chem_comp.mon_nstd_flag . _chem_comp.name 6-benzyl-1-hydroxy-4-methylpyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 N1 1BZ sing 1 n n O1 C3 1BZ doub 2 n n N1 C3 1BZ sing 3 n n N1 C2 1BZ sing 4 n n C6 C2 1BZ sing 5 n n C6 C10 1BZ sing 6 n n C3 C4 1BZ sing 7 n n C2 C1 1BZ doub 8 n n C4 C5 1BZ doub 9 n n C1 C5 1BZ sing 10 n n C5 C13 1BZ sing 11 n n C10 C11 1BZ doub 12 n y C10 C9 1BZ sing 13 n y C11 C12 1BZ sing 14 n y C9 C8 1BZ doub 15 n y C12 C7 1BZ doub 16 n y C8 C7 1BZ sing 17 n y C1 H1 1BZ sing 18 n n C4 H3 1BZ sing 19 n n C6 H5 1BZ sing 20 n n C6 H6 1BZ sing 21 n n C7 H7 1BZ sing 22 n n C8 H8 1BZ sing 23 n n C9 H9 1BZ sing 24 n n C11 H10 1BZ sing 25 n n C12 H11 1BZ sing 26 n n C13 H12 1BZ sing 27 n n C13 H13 1BZ sing 28 n n C13 H14 1BZ sing 29 n n O2 H15 1BZ sing 30 n n # _atom_sites.entry_id 4I3L _atom_sites.fract_transf_matrix[1][1] 0.012368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 SO4 A 1 502 700 SO4 SO4 . E 3 SO4 A 1 503 704 SO4 SO4 . F 4 1BZ A 1 504 1 1BZ 1BZ . G 2 NDP B 1 501 502 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1BZ . . . F 4 2.012 -27.245 -14.713 1 100.48 ? C1 1BZ 504 A 1 HETATM 2 C C2 1BZ . . . F 4 2.477 -28.56 -14.868 1 101.2 ? C2 1BZ 504 A 1 HETATM 3 N N1 1BZ . . . F 4 1.57 -29.598 -14.99 1 99.16 ? N1 1BZ 504 A 1 HETATM 4 C C3 1BZ . . . F 4 0.211 -29.326 -14.962 1 96.52 ? C3 1BZ 504 A 1 HETATM 5 C C4 1BZ . . . F 4 -0.238 -28.006 -14.803 1 95.47 ? C4 1BZ 504 A 1 HETATM 6 C C5 1BZ . . . F 4 0.668 -26.973 -14.676 1 98.41 ? C5 1BZ 504 A 1 HETATM 7 O O1 1BZ . . . F 4 -0.613 -30.233 -15.077 1 90.55 ? O1 1BZ 504 A 1 HETATM 8 C C6 1BZ . . . F 4 3.957 -28.809 -14.872 1 95.84 ? C6 1BZ 504 A 1 HETATM 9 C C7 1BZ . . . F 4 5.438 -27.502 -11.032 1 88.46 ? C7 1BZ 504 A 1 HETATM 10 C C8 1BZ . . . F 4 4.868 -28.769 -11.169 1 89.48 ? C8 1BZ 504 A 1 HETATM 11 C C9 1BZ . . . F 4 4.387 -29.204 -12.41 1 92.42 ? C9 1BZ 504 A 1 HETATM 12 C C10 1BZ . . . F 4 4.481 -28.368 -13.533 1 95.79 ? C10 1BZ 504 A 1 HETATM 13 C C11 1BZ . . . F 4 5.047 -27.091 -13.38 1 94.63 ? C11 1BZ 504 A 1 HETATM 14 C C12 1BZ . . . F 4 5.527 -26.659 -12.14 1 91.97 ? C12 1BZ 504 A 1 HETATM 15 C C13 1BZ . . . F 4 0.218 -25.556 -14.504 1 93.53 ? C13 1BZ 504 A 1 HETATM 16 O O2 1BZ . . . F 4 2 -30.826 -15.135 1 93.49 ? O2 1BZ 504 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #