data_4I3Q # _model_server_result.job_id zDjf53bXoJ4NX9Pcr4g89A _model_server_result.datetime_utc '2024-12-21 15:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4I3Q # _exptl.entry_id 4I3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I3Q _cell.length_a 79.11 _cell.length_b 101.47 _cell.length_c 130.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 79.11 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 79.11 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4I3Q _atom_sites.fract_transf_matrix[1][1] 0.012641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 15.773 19.819 -10.124 1 57.9 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 16.736 22.677 -14.136 1 62.32 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 17.295 26.501 -11.199 1 64.29 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 16.002 23.69 -7.239 1 59.32 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 16.04 20.329 -11.46 1 60.85 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 16.031 19.379 -12.617 1 61.46 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 16.313 20.22 -13.781 1 62.1 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 16.454 21.595 -13.229 1 57.56 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 16.381 19.761 -15.221 1 63.97 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 15.773 17.892 -12.618 1 60.01 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 14.283 17.602 -12.672 1 67.67 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 14.139 16.129 -12.911 1 69.87 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 13.364 15.825 -13.827 1 67.89 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 14.801 15.311 -12.204 1 71.11 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 17.002 24.017 -13.659 1 66.67 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 17.484 25.012 -14.634 1 70.24 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 17.667 26.158 -13.747 1 69.31 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 17.264 25.662 -12.405 1 65.37 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 17.703 24.822 -16.114 1 71.54 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 18.152 27.516 -14.116 1 67.57 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 17.553 28.209 -15.063 1 62.26 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 16.817 26.069 -9.886 1 61.15 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 16.493 27.062 -8.825 1 60.97 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 16.119 26.207 -7.692 1 62.48 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 16.268 24.804 -8.145 1 62.03 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 16.51 28.565 -8.909 1 60.41 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 15.645 26.618 -6.336 1 63.21 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 16.214 27.609 -5.687 1 64.83 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 15.854 22.328 -7.721 1 62.88 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 15.65 21.235 -6.73 1 61.09 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 15.576 20.067 -7.598 1 59.63 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 15.734 20.669 -8.956 1 60.49 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 15.55 21.34 -5.237 1 62.66 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 15.351 18.629 -7.224 1 58.78 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 13.846 18.592 -6.967 1 63.21 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 13.377 17.34 -6.256 1 65.41 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 12.282 17.366 -5.672 1 63.74 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 14.08 16.302 -6.309 1 71.45 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 16.431 21.71 -11.783 1 58.98 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 16.92 24.366 -12.357 1 62.13 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 16.857 24.662 -9.475 1 62.03 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 15.948 22.002 -9.042 1 60.29 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 16.163 23.341 -10.679 1 60.76 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #