data_4I3Y # _model_server_result.job_id 06-ilpc7H_AW2UMqrcMFqw _model_server_result.datetime_utc '2024-10-28 02:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":304}' # _entry.id 4I3Y # _exptl.entry_id 4I3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I3Y _cell.length_a 60.136 _cell.length_b 62.819 _cell.length_c 141.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 A,C,D,E,F,G,H,I,J,Q 2 1 B,K,L,M,N,O,P,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 K N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 76 A GLU 70 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 A OE1 GLU 76 A GLU 70 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 A OD1 ASP 94 A ASP 88 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc4 A O ILE 96 A ILE 90 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 C O4 PO4 . A PO4 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc6 C O3 PO4 . A PO4 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc7 C O1 PO4 . A PO4 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc8 C O4 PO4 . A PO4 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc9 D MG MG . A MG 302 1_555 Q O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 F MG MG . A MG 304 1_555 Q O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc11 F MG MG . A MG 304 1_555 Q O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc12 F MG MG . A MG 304 1_555 Q O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 B OE2 GLU 76 B GLU 70 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc14 B OE1 GLU 76 B GLU 70 1_555 N MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc15 B OD1 ASP 94 B ASP 88 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc16 B O ILE 96 B ILE 90 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc17 K MG MG . B MG 301 1_555 L O2 PO4 . B PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc18 K MG MG . B MG 301 1_555 L O4 PO4 . B PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc19 K MG MG . B MG 301 1_555 R O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc20 L O1 PO4 . B PO4 302 1_555 N MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc21 L O4 PO4 . B PO4 302 1_555 N MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc22 N MG MG . B MG 304 1_555 R O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc23 N MG MG . B MG 304 1_555 R O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc24 N MG MG . B MG 304 1_555 R O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4I3Y _atom_sites.fract_transf_matrix[1][1] 0.016629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 2 PO4 PO4 . D 3 MG A 1 302 1 MG MG . E 4 GOL A 1 303 1 GOL GOL . F 3 MG A 1 304 1 MG MG . G 5 PG4 A 1 305 1 PG4 PG4 . H 5 PG4 A 1 306 1 PG4 PG4 . I 4 GOL A 1 307 1 GOL GOL . J 5 PG4 A 1 308 1 PG4 PG4 . K 3 MG B 1 301 1 MG MG . L 2 PO4 B 1 302 1 PO4 PO4 . M 4 GOL B 1 303 1 GOL GOL . N 3 MG B 1 304 1 MG MG . O 4 GOL B 1 305 1 GOL GOL . P 4 GOL B 1 306 1 GOL GOL . Q 6 HOH A 1 401 8 HOH HOH . Q 6 HOH A 2 402 9 HOH HOH . Q 6 HOH A 3 403 10 HOH HOH . Q 6 HOH A 4 404 11 HOH HOH . Q 6 HOH A 5 405 13 HOH HOH . Q 6 HOH A 6 406 14 HOH HOH . Q 6 HOH A 7 407 15 HOH HOH . Q 6 HOH A 8 408 16 HOH HOH . Q 6 HOH A 9 409 17 HOH HOH . Q 6 HOH A 10 410 20 HOH HOH . Q 6 HOH A 11 411 21 HOH HOH . Q 6 HOH A 12 412 25 HOH HOH . Q 6 HOH A 13 413 26 HOH HOH . Q 6 HOH A 14 414 27 HOH HOH . Q 6 HOH A 15 415 28 HOH HOH . Q 6 HOH A 16 416 29 HOH HOH . Q 6 HOH A 17 417 31 HOH HOH . Q 6 HOH A 18 418 32 HOH HOH . Q 6 HOH A 19 419 33 HOH HOH . Q 6 HOH A 20 420 34 HOH HOH . Q 6 HOH A 21 421 35 HOH HOH . Q 6 HOH A 22 422 41 HOH HOH . Q 6 HOH A 23 423 43 HOH HOH . Q 6 HOH A 24 424 46 HOH HOH . Q 6 HOH A 25 425 57 HOH HOH . Q 6 HOH A 26 426 61 HOH HOH . Q 6 HOH A 27 427 64 HOH HOH . Q 6 HOH A 28 428 65 HOH HOH . Q 6 HOH A 29 429 66 HOH HOH . Q 6 HOH A 30 430 67 HOH HOH . Q 6 HOH A 31 431 69 HOH HOH . Q 6 HOH A 32 432 70 HOH HOH . Q 6 HOH A 33 433 77 HOH HOH . Q 6 HOH A 34 434 78 HOH HOH . Q 6 HOH A 35 435 83 HOH HOH . Q 6 HOH A 36 436 84 HOH HOH . Q 6 HOH A 37 437 85 HOH HOH . Q 6 HOH A 38 438 86 HOH HOH . Q 6 HOH A 39 439 87 HOH HOH . Q 6 HOH A 40 440 94 HOH HOH . Q 6 HOH A 41 441 95 HOH HOH . Q 6 HOH A 42 442 96 HOH HOH . Q 6 HOH A 43 443 97 HOH HOH . Q 6 HOH A 44 444 103 HOH HOH . Q 6 HOH A 45 445 104 HOH HOH . Q 6 HOH A 46 446 105 HOH HOH . Q 6 HOH A 47 447 106 HOH HOH . Q 6 HOH A 48 448 107 HOH HOH . Q 6 HOH A 49 449 108 HOH HOH . Q 6 HOH A 50 450 119 HOH HOH . Q 6 HOH A 51 451 120 HOH HOH . Q 6 HOH A 52 452 121 HOH HOH . Q 6 HOH A 53 453 122 HOH HOH . Q 6 HOH A 54 454 123 HOH HOH . Q 6 HOH A 55 455 126 HOH HOH . Q 6 HOH A 56 456 127 HOH HOH . Q 6 HOH A 57 457 129 HOH HOH . Q 6 HOH A 58 458 131 HOH HOH . Q 6 HOH A 59 459 132 HOH HOH . Q 6 HOH A 60 460 133 HOH HOH . Q 6 HOH A 61 461 135 HOH HOH . Q 6 HOH A 62 462 136 HOH HOH . Q 6 HOH A 63 463 137 HOH HOH . Q 6 HOH A 64 464 145 HOH HOH . Q 6 HOH A 65 465 146 HOH HOH . Q 6 HOH A 66 466 149 HOH HOH . Q 6 HOH A 67 467 151 HOH HOH . Q 6 HOH A 68 468 152 HOH HOH . Q 6 HOH A 69 469 153 HOH HOH . Q 6 HOH A 70 470 154 HOH HOH . Q 6 HOH A 71 471 155 HOH HOH . Q 6 HOH A 72 472 156 HOH HOH . Q 6 HOH A 73 473 160 HOH HOH . Q 6 HOH A 74 474 161 HOH HOH . Q 6 HOH A 75 475 165 HOH HOH . Q 6 HOH A 76 476 168 HOH HOH . Q 6 HOH A 77 477 169 HOH HOH . Q 6 HOH A 78 478 171 HOH HOH . Q 6 HOH A 79 479 172 HOH HOH . Q 6 HOH A 80 480 178 HOH HOH . Q 6 HOH A 81 481 182 HOH HOH . Q 6 HOH A 82 482 185 HOH HOH . Q 6 HOH A 83 483 186 HOH HOH . Q 6 HOH A 84 484 187 HOH HOH . Q 6 HOH A 85 485 190 HOH HOH . Q 6 HOH A 86 486 191 HOH HOH . Q 6 HOH A 87 487 192 HOH HOH . Q 6 HOH A 88 488 193 HOH HOH . Q 6 HOH A 89 489 196 HOH HOH . Q 6 HOH A 90 490 197 HOH HOH . Q 6 HOH A 91 491 198 HOH HOH . Q 6 HOH A 92 492 199 HOH HOH . Q 6 HOH A 93 493 205 HOH HOH . Q 6 HOH A 94 494 206 HOH HOH . Q 6 HOH A 95 495 207 HOH HOH . Q 6 HOH A 96 496 208 HOH HOH . Q 6 HOH A 97 497 212 HOH HOH . Q 6 HOH A 98 498 213 HOH HOH . Q 6 HOH A 99 499 214 HOH HOH . Q 6 HOH A 100 500 215 HOH HOH . Q 6 HOH A 101 501 216 HOH HOH . Q 6 HOH A 102 502 218 HOH HOH . Q 6 HOH A 103 503 220 HOH HOH . Q 6 HOH A 104 504 221 HOH HOH . Q 6 HOH A 105 505 223 HOH HOH . R 6 HOH B 1 401 1 HOH HOH . R 6 HOH B 2 402 2 HOH HOH . R 6 HOH B 3 403 3 HOH HOH . R 6 HOH B 4 404 4 HOH HOH . R 6 HOH B 5 405 5 HOH HOH . R 6 HOH B 6 406 6 HOH HOH . R 6 HOH B 7 407 7 HOH HOH . R 6 HOH B 8 408 18 HOH HOH . R 6 HOH B 9 409 19 HOH HOH . R 6 HOH B 10 410 22 HOH HOH . R 6 HOH B 11 411 23 HOH HOH . R 6 HOH B 12 412 24 HOH HOH . R 6 HOH B 13 413 36 HOH HOH . R 6 HOH B 14 414 37 HOH HOH . R 6 HOH B 15 415 38 HOH HOH . R 6 HOH B 16 416 39 HOH HOH . R 6 HOH B 17 417 40 HOH HOH . R 6 HOH B 18 418 42 HOH HOH . R 6 HOH B 19 419 44 HOH HOH . R 6 HOH B 20 420 45 HOH HOH . R 6 HOH B 21 421 47 HOH HOH . R 6 HOH B 22 422 48 HOH HOH . R 6 HOH B 23 423 49 HOH HOH . R 6 HOH B 24 424 50 HOH HOH . R 6 HOH B 25 425 52 HOH HOH . R 6 HOH B 26 426 53 HOH HOH . R 6 HOH B 27 427 54 HOH HOH . R 6 HOH B 28 428 55 HOH HOH . R 6 HOH B 29 429 56 HOH HOH . R 6 HOH B 30 430 58 HOH HOH . R 6 HOH B 31 431 59 HOH HOH . R 6 HOH B 32 432 60 HOH HOH . R 6 HOH B 33 433 62 HOH HOH . R 6 HOH B 34 434 63 HOH HOH . R 6 HOH B 35 435 68 HOH HOH . R 6 HOH B 36 436 72 HOH HOH . R 6 HOH B 37 437 73 HOH HOH . R 6 HOH B 38 438 74 HOH HOH . R 6 HOH B 39 439 75 HOH HOH . R 6 HOH B 40 440 79 HOH HOH . R 6 HOH B 41 441 80 HOH HOH . R 6 HOH B 42 442 81 HOH HOH . R 6 HOH B 43 443 82 HOH HOH . R 6 HOH B 44 444 88 HOH HOH . R 6 HOH B 45 445 89 HOH HOH . R 6 HOH B 46 446 90 HOH HOH . R 6 HOH B 47 447 91 HOH HOH . R 6 HOH B 48 448 92 HOH HOH . R 6 HOH B 49 449 93 HOH HOH . R 6 HOH B 50 450 98 HOH HOH . R 6 HOH B 51 451 99 HOH HOH . R 6 HOH B 52 452 100 HOH HOH . R 6 HOH B 53 453 101 HOH HOH . R 6 HOH B 54 454 102 HOH HOH . R 6 HOH B 55 455 109 HOH HOH . R 6 HOH B 56 456 110 HOH HOH . R 6 HOH B 57 457 111 HOH HOH . R 6 HOH B 58 458 112 HOH HOH . R 6 HOH B 59 459 113 HOH HOH . R 6 HOH B 60 460 114 HOH HOH . R 6 HOH B 61 461 115 HOH HOH . R 6 HOH B 62 462 116 HOH HOH . R 6 HOH B 63 463 117 HOH HOH . R 6 HOH B 64 464 118 HOH HOH . R 6 HOH B 65 465 124 HOH HOH . R 6 HOH B 66 466 125 HOH HOH . R 6 HOH B 67 467 128 HOH HOH . R 6 HOH B 68 468 130 HOH HOH . R 6 HOH B 69 469 134 HOH HOH . R 6 HOH B 70 470 138 HOH HOH . R 6 HOH B 71 471 139 HOH HOH . R 6 HOH B 72 472 140 HOH HOH . R 6 HOH B 73 473 141 HOH HOH . R 6 HOH B 74 474 142 HOH HOH . R 6 HOH B 75 475 143 HOH HOH . R 6 HOH B 76 476 144 HOH HOH . R 6 HOH B 77 477 147 HOH HOH . R 6 HOH B 78 478 148 HOH HOH . R 6 HOH B 79 479 150 HOH HOH . R 6 HOH B 80 480 157 HOH HOH . R 6 HOH B 81 481 158 HOH HOH . R 6 HOH B 82 482 159 HOH HOH . R 6 HOH B 83 483 162 HOH HOH . R 6 HOH B 84 484 163 HOH HOH . R 6 HOH B 85 485 164 HOH HOH . R 6 HOH B 86 486 166 HOH HOH . R 6 HOH B 87 487 167 HOH HOH . R 6 HOH B 88 488 170 HOH HOH . R 6 HOH B 89 489 173 HOH HOH . R 6 HOH B 90 490 174 HOH HOH . R 6 HOH B 91 491 175 HOH HOH . R 6 HOH B 92 492 176 HOH HOH . R 6 HOH B 93 493 177 HOH HOH . R 6 HOH B 94 494 179 HOH HOH . R 6 HOH B 95 495 180 HOH HOH . R 6 HOH B 96 496 181 HOH HOH . R 6 HOH B 97 497 183 HOH HOH . R 6 HOH B 98 498 184 HOH HOH . R 6 HOH B 99 499 188 HOH HOH . R 6 HOH B 100 500 189 HOH HOH . R 6 HOH B 101 501 194 HOH HOH . R 6 HOH B 102 502 195 HOH HOH . R 6 HOH B 103 503 200 HOH HOH . R 6 HOH B 104 504 201 HOH HOH . R 6 HOH B 105 505 202 HOH HOH . R 6 HOH B 106 506 203 HOH HOH . R 6 HOH B 107 507 204 HOH HOH . R 6 HOH B 108 508 209 HOH HOH . R 6 HOH B 109 509 210 HOH HOH . R 6 HOH B 110 510 211 HOH HOH . R 6 HOH B 111 511 217 HOH HOH . R 6 HOH B 112 512 219 HOH HOH . R 6 HOH B 113 513 222 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.271 _atom_site.Cartn_y 23.662 _atom_site.Cartn_z 19.167 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #