data_4I41
#
_model_server_result.job_id            Wv2k85GfBzZVte1LThBQDQ 
_model_server_result.datetime_utc      '2025-01-10 10:01:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    4I41 
#
_exptl.entry_id    4I41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              444.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4I41 
_cell.length_a            98.652 
_cell.length_b            98.652 
_cell.length_c            80.924 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 236 A SER 260 1_555 A N SEP 237 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 A C SEP 237 A SEP 261 1_555 A N GLU 238 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
#
_chem_comp.formula           'C22 H28 N4 O6' 
_chem_comp.formula_weight    444.481 
_chem_comp.id                MIX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MITOXANTRONE;1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)ANTHRA-9,10-QUINONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAC CAK MIX sing 237 n n 
OAC HAC MIX sing 238 n n 
CAK CAM MIX sing 239 n n 
CAK HAK1 MIX sing 240 n n 
CAK HAK2 MIX sing 241 n n 
CAM NAS MIX sing 242 n n 
CAM HAM1 MIX sing 243 n n 
CAM HAM2 MIX sing 244 n n 
NAS CAO MIX sing 245 n n 
NAS HAS MIX sing 246 n n 
CAO CAQ MIX sing 247 n n 
CAO HAO1 MIX sing 248 n n 
CAO HAO2 MIX sing 249 n n 
CAQ NAU MIX sing 250 n n 
CAQ HAQ1 MIX sing 251 n n 
CAQ HAQ2 MIX sing 252 n n 
NAU CAY MIX sing 253 n n 
NAU HAU MIX sing 254 n n 
CAY CAI MIX doub 255 n y 
CAY CBE MIX sing 256 n y 
CAI CAJ MIX sing 257 n y 
CAI HAI MIX sing 258 n n 
CAJ CAZ MIX doub 259 n y 
CAJ HAJ MIX sing 260 n n 
CBE CBA MIX sing 261 n n 
CBE CBF MIX doub 262 n y 
CBA OAA MIX doub 263 n n 
CBA CBC MIX sing 264 n n 
CBC CAW MIX sing 265 n y 
CBC CBD MIX doub 266 n y 
CAW OAE MIX sing 267 n n 
CAW CAG MIX doub 268 n y 
OAE HAE MIX sing 269 n n 
CAG CAH MIX sing 270 n y 
CAG HAG MIX sing 271 n n 
CAH CAX MIX doub 272 n y 
CAH HAH MIX sing 273 n n 
CAX OAF MIX sing 274 n n 
CAX CBD MIX sing 275 n y 
OAF HAF MIX sing 276 n n 
CBD CBB MIX sing 277 n n 
CBB OAB MIX doub 278 n n 
CBB CBF MIX sing 279 n n 
CBF CAZ MIX sing 280 n y 
CAZ NAV MIX sing 281 n n 
NAV CAR MIX sing 282 n n 
NAV HAV MIX sing 283 n n 
CAR CAP MIX sing 284 n n 
CAR HAR1 MIX sing 285 n n 
CAR HAR2 MIX sing 286 n n 
CAP NAT MIX sing 287 n n 
CAP HAP1 MIX sing 288 n n 
CAP HAP2 MIX sing 289 n n 
NAT CAN MIX sing 290 n n 
NAT HAT MIX sing 291 n n 
CAN CAL MIX sing 292 n n 
CAN HAN1 MIX sing 293 n n 
CAN HAN2 MIX sing 294 n n 
CAL OAD MIX sing 295 n n 
CAL HAL1 MIX sing 296 n n 
CAL HAL2 MIX sing 297 n n 
OAD HAD MIX sing 298 n n 
#
_atom_sites.entry_id                     4I41 
_atom_sites.fract_transf_matrix[1][1]    0.010137 
_atom_sites.fract_transf_matrix[1][2]    0.005852 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MIX A 1 500 500 MIX MIX . 
C 2 MIX A 1 501 501 MIX MIX . 
D 3 HOH A 1 601 502 HOH HOH . 
D 3 HOH A 2 602 503 HOH HOH . 
D 3 HOH A 3 603 504 HOH HOH . 
D 3 HOH A 4 604 505 HOH HOH . 
D 3 HOH A 5 605 506 HOH HOH . 
D 3 HOH A 6 606 507 HOH HOH . 
D 3 HOH A 7 607 508 HOH HOH . 
D 3 HOH A 8 608 509 HOH HOH . 
D 3 HOH A 9 609 510 HOH HOH . 
D 3 HOH A 10 610 511 HOH HOH . 
D 3 HOH A 11 611 512 HOH HOH . 
D 3 HOH A 12 612 513 HOH HOH . 
D 3 HOH A 13 613 514 HOH HOH . 
D 3 HOH A 14 614 515 HOH HOH . 
D 3 HOH A 15 615 516 HOH HOH . 
D 3 HOH A 16 616 517 HOH HOH . 
D 3 HOH A 17 617 518 HOH HOH . 
D 3 HOH A 18 618 519 HOH HOH . 
D 3 HOH A 19 619 520 HOH HOH . 
D 3 HOH A 20 620 521 HOH HOH . 
D 3 HOH A 21 621 522 HOH HOH . 
D 3 HOH A 22 622 523 HOH HOH . 
D 3 HOH A 23 623 524 HOH HOH . 
D 3 HOH A 24 624 525 HOH HOH . 
D 3 HOH A 25 625 526 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAC MIX . . . B 2 -9.567 -33.651 4.717 1 60.78 ? OAC MIX 500 A 1 
HETATM 2 C CAK MIX . . . B 2 -10.684 -33.109 3.999 1 54.8 ? CAK MIX 500 A 1 
HETATM 3 C CAM MIX . . . B 2 -11.979 -33.662 4.569 1 49.13 ? CAM MIX 500 A 1 
HETATM 4 N NAS MIX . . . B 2 -12.691 -34.385 3.543 1 49.29 ? NAS MIX 500 A 1 
HETATM 5 C CAO MIX . . . B 2 -14.128 -34.51 3.617 1 48.34 ? CAO MIX 500 A 1 
HETATM 6 C CAQ MIX . . . B 2 -14.764 -34.773 2.248 1 47.43 ? CAQ MIX 500 A 1 
HETATM 7 N NAU MIX . . . B 2 -16.167 -34.377 2.152 1 41.74 ? NAU MIX 500 A 1 
HETATM 8 C CAY MIX . . . B 2 -17.128 -35.189 2.681 1 41.84 ? CAY MIX 500 A 1 
HETATM 9 C CAI MIX . . . B 2 -17.411 -35.203 4.075 1 42.25 ? CAI MIX 500 A 1 
HETATM 10 C CAJ MIX . . . B 2 -18.386 -36.027 4.66 1 39.39 ? CAJ MIX 500 A 1 
HETATM 11 C CBE MIX . . . B 2 -17.91 -36.091 1.782 1 38.78 ? CBE MIX 500 A 1 
HETATM 12 C CBA MIX . . . B 2 -17.669 -36.145 0.311 1 38.89 ? CBA MIX 500 A 1 
HETATM 13 O OAA MIX . . . B 2 -16.799 -35.407 -0.204 1 42.15 ? OAA MIX 500 A 1 
HETATM 14 C CBC MIX . . . B 2 -18.473 -37.086 -0.534 1 38.64 ? CBC MIX 500 A 1 
HETATM 15 C CAW MIX . . . B 2 -18.298 -37.191 -2.016 1 41.35 ? CAW MIX 500 A 1 
HETATM 16 O OAE MIX . . . B 2 -17.354 -36.415 -2.66 1 47.27 ? OAE MIX 500 A 1 
HETATM 17 C CAG MIX . . . B 2 -19.097 -38.096 -2.736 1 39.87 ? CAG MIX 500 A 1 
HETATM 18 C CAH MIX . . . B 2 -20.068 -38.904 -2.119 1 38.23 ? CAH MIX 500 A 1 
HETATM 19 C CAX MIX . . . B 2 -20.297 -38.846 -0.748 1 35.83 ? CAX MIX 500 A 1 
HETATM 20 O OAF MIX . . . B 2 -21.223 -39.638 -0.163 1 35.23 ? OAF MIX 500 A 1 
HETATM 21 C CBD MIX . . . B 2 -19.502 -37.942 0.099 1 35.97 ? CBD MIX 500 A 1 
HETATM 22 C CBB MIX . . . B 2 -19.739 -37.878 1.562 1 36.65 ? CBB MIX 500 A 1 
HETATM 23 O OAB MIX . . . B 2 -20.607 -38.596 2.081 1 36.71 ? OAB MIX 500 A 1 
HETATM 24 C CBF MIX . . . B 2 -18.943 -36.961 2.409 1 37.01 ? CBF MIX 500 A 1 
HETATM 25 C CAZ MIX . . . B 2 -19.157 -36.892 3.882 1 39.54 ? CAZ MIX 500 A 1 
HETATM 26 N NAV MIX . . . B 2 -20.079 -37.693 4.458 1 45.82 ? NAV MIX 500 A 1 
HETATM 27 C CAR MIX . . . B 2 -19.752 -39.114 4.524 1 50.37 ? CAR MIX 500 A 1 
HETATM 28 C CAP MIX . . . B 2 -20.585 -39.903 5.511 1 56.3 ? CAP MIX 500 A 1 
HETATM 29 N NAT MIX . . . B 2 -19.95 -39.882 6.821 1 57.16 ? NAT MIX 500 A 1 
HETATM 30 C CAN MIX . . . B 2 -20.625 -40.552 7.921 1 55.3 ? CAN MIX 500 A 1 
HETATM 31 C CAL MIX . . . B 2 -20.493 -42.063 7.812 1 53.22 ? CAL MIX 500 A 1 
HETATM 32 O OAD MIX . . . B 2 -19.098 -42.333 7.966 1 54.28 ? OAD MIX 500 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#