data_4I41 # _model_server_result.job_id II0FWOg3OALXv7ZArhA27w _model_server_result.datetime_utc '2024-11-04 20:55:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4I41 # _exptl.entry_id 4I41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I41 _cell.length_a 98.652 _cell.length_b 98.652 _cell.length_c 80.924 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 236 A SER 260 1_555 A N SEP 237 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale2 A C SEP 237 A SEP 261 1_555 A N GLU 238 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? # _chem_comp.formula 'C22 H28 N4 O6' _chem_comp.formula_weight 444.481 _chem_comp.id MIX _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MITOXANTRONE, 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)ANTHRA-9,10-QUINONE' # _atom_sites.entry_id 4I41 _atom_sites.fract_transf_matrix[1][1] 0.010137 _atom_sites.fract_transf_matrix[1][2] 0.005852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MIX A 1 500 500 MIX MIX . C 2 MIX A 1 501 501 MIX MIX . D 3 HOH A 1 601 502 HOH HOH . D 3 HOH A 2 602 503 HOH HOH . D 3 HOH A 3 603 504 HOH HOH . D 3 HOH A 4 604 505 HOH HOH . D 3 HOH A 5 605 506 HOH HOH . D 3 HOH A 6 606 507 HOH HOH . D 3 HOH A 7 607 508 HOH HOH . D 3 HOH A 8 608 509 HOH HOH . D 3 HOH A 9 609 510 HOH HOH . D 3 HOH A 10 610 511 HOH HOH . D 3 HOH A 11 611 512 HOH HOH . D 3 HOH A 12 612 513 HOH HOH . D 3 HOH A 13 613 514 HOH HOH . D 3 HOH A 14 614 515 HOH HOH . D 3 HOH A 15 615 516 HOH HOH . D 3 HOH A 16 616 517 HOH HOH . D 3 HOH A 17 617 518 HOH HOH . D 3 HOH A 18 618 519 HOH HOH . D 3 HOH A 19 619 520 HOH HOH . D 3 HOH A 20 620 521 HOH HOH . D 3 HOH A 21 621 522 HOH HOH . D 3 HOH A 22 622 523 HOH HOH . D 3 HOH A 23 623 524 HOH HOH . D 3 HOH A 24 624 525 HOH HOH . D 3 HOH A 25 625 526 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC MIX . . . C 2 1.55 -38.707 18.875 1 79.37 ? OAC MIX 501 A 1 HETATM 2 C CAK MIX . . . C 2 0.821 -39.918 19.112 1 75.98 ? CAK MIX 501 A 1 HETATM 3 C CAM MIX . . . C 2 0.128 -40.287 17.809 1 77.46 ? CAM MIX 501 A 1 HETATM 4 N NAS MIX . . . C 2 -1.277 -39.912 17.753 1 79.46 ? NAS MIX 501 A 1 HETATM 5 C CAO MIX . . . C 2 -1.778 -38.595 18.13 1 83.86 ? CAO MIX 501 A 1 HETATM 6 C CAQ MIX . . . C 2 -2.427 -37.843 16.968 1 85.41 ? CAQ MIX 501 A 1 HETATM 7 N NAU MIX . . . C 2 -3.873 -37.634 17.048 1 90.8 ? NAU MIX 501 A 1 HETATM 8 C CAY MIX . . . C 2 -4.63 -38.058 16.005 1 94.66 ? CAY MIX 501 A 1 HETATM 9 C CAI MIX . . . C 2 -4.994 -39.401 15.995 1 92.03 ? CAI MIX 501 A 1 HETATM 10 C CAJ MIX . . . C 2 -5.745 -39.965 14.966 1 99.01 ? CAJ MIX 501 A 1 HETATM 11 C CBE MIX . . . C 2 -5.055 -37.16 14.864 1 101.52 ? CBE MIX 501 A 1 HETATM 12 C CBA MIX . . . C 2 -4.695 -35.697 14.796 1 101.08 ? CBA MIX 501 A 1 HETATM 13 O OAA MIX . . . C 2 -4.009 -35.183 15.712 1 92.86 ? OAA MIX 501 A 1 HETATM 14 C CBC MIX . . . C 2 -5.153 -34.852 13.628 1 99.92 ? CBC MIX 501 A 1 HETATM 15 C CAW MIX . . . C 2 -4.826 -33.391 13.509 1 93.87 ? CAW MIX 501 A 1 HETATM 16 O OAE MIX . . . C 2 -4.091 -32.799 14.478 1 86.59 ? OAE MIX 501 A 1 HETATM 17 C CAG MIX . . . C 2 -5.259 -32.624 12.42 1 91.45 ? CAG MIX 501 A 1 HETATM 18 C CAH MIX . . . C 2 -6.015 -33.184 11.39 1 93.31 ? CAH MIX 501 A 1 HETATM 19 C CAX MIX . . . C 2 -6.379 -34.536 11.391 1 96.58 ? CAX MIX 501 A 1 HETATM 20 O OAF MIX . . . C 2 -7.114 -34.995 10.345 1 94.46 ? OAF MIX 501 A 1 HETATM 21 C CBD MIX . . . C 2 -5.965 -35.45 12.522 1 100.86 ? CBD MIX 501 A 1 HETATM 22 C CBB MIX . . . C 2 -6.32 -36.91 12.584 1 98.86 ? CBB MIX 501 A 1 HETATM 23 O OAB MIX . . . C 2 -6.991 -37.407 11.654 1 97.31 ? OAB MIX 501 A 1 HETATM 24 C CBF MIX . . . C 2 -5.87 -37.765 13.75 1 102.09 ? CBF MIX 501 A 1 HETATM 25 C CAZ MIX . . . C 2 -6.201 -39.235 13.861 1 99.91 ? CAZ MIX 501 A 1 HETATM 26 N NAV MIX . . . C 2 -6.925 -39.884 12.91 1 93.53 ? NAV MIX 501 A 1 HETATM 27 C CAR MIX . . . C 2 -8.005 -40.785 13.267 1 85.94 ? CAR MIX 501 A 1 HETATM 28 C CAP MIX . . . C 2 -7.819 -42.21 12.762 1 83.71 ? CAP MIX 501 A 1 HETATM 29 N NAT MIX . . . C 2 -9.07 -42.955 12.706 1 82.55 ? NAT MIX 501 A 1 HETATM 30 C CAN MIX . . . C 2 -9.508 -43.735 13.855 1 85.89 ? CAN MIX 501 A 1 HETATM 31 C CAL MIX . . . C 2 -10.318 -42.936 14.883 1 89.89 ? CAL MIX 501 A 1 HETATM 32 O OAD MIX . . . C 2 -9.772 -43.064 16.205 1 82.61 ? OAD MIX 501 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #