data_4I4G # _model_server_result.job_id geg8_g5MkRLDXC_ubi-NDQ _model_server_result.datetime_utc '2024-12-21 16:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4I4G # _exptl.entry_id 4I4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I4G _cell.length_a 76.655 _cell.length_b 99.585 _cell.length_c 126.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N35 Z8Z . A Z8Z 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4I4G _atom_sites.fract_transf_matrix[1][1] 0.013045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 Z8Z A 1 602 600 Z8Z Z8Z . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.262 19.742 -9.014 1 54.21 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.612 22.655 -13.067 1 52.3 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -21.99 26.454 -10.114 1 56.51 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.068 23.589 -6.164 1 59.03 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.103 20.288 -10.348 1 54.9 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.235 19.374 -11.498 1 51.07 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -23.042 20.212 -12.672 1 47.84 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.82 21.562 -12.138 1 52.46 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -23.112 19.786 -14.092 1 48 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.538 17.907 -11.437 1 48.91 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -25.039 17.727 -11.539 1 54.44 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.231 16.306 -11.997 1 58.19 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -24.268 15.567 -11.769 1 61.15 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -26.287 15.911 -12.561 1 58.94 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.373 23.986 -12.579 1 55.13 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -21.954 25.023 -13.538 1 58.08 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.749 26.156 -12.627 1 60.12 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.09 25.617 -11.3 1 56.77 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -21.784 24.862 -15.025 1 58.31 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.308 27.548 -12.928 1 62.33 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.713 28.183 -14.014 1 57.87 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.338 25.982 -8.786 1 56.82 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.571 26.952 -7.683 1 57.92 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.884 26.065 -6.547 1 58.21 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.825 24.69 -7.049 1 55.58 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.526 28.452 -7.754 1 55.94 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -23.251 26.446 -5.173 1 56.76 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -22.403 27.169 -4.487 1 61.57 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.188 22.218 -6.634 1 58.37 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.289 21.145 -5.622 1 57.83 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.336 19.976 -6.483 1 58.19 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.291 20.571 -7.845 1 53.95 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.309 21.269 -4.12 1 59.31 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.488 18.533 -6.1 1 59.94 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.007 18.346 -6.087 1 59.46 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.423 17.172 -5.227 1 66.35 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.504 17.229 -4.576 1 60.69 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.66 16.176 -5.213 1 68.43 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.702 21.646 -10.683 1 53.72 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.416 24.302 -11.27 1 54.9 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.349 24.564 -8.413 1 55.41 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.15 21.883 -7.942 1 53.97 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -23.072 23.211 -9.588 1 58.63 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1126 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #