data_4I4L # _model_server_result.job_id f7gjoBhB3XJv9HUgLWFrCw _model_server_result.datetime_utc '2025-07-07 23:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 4I4L # _exptl.entry_id 4I4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I4L _cell.length_a 55.942 _cell.length_b 181.903 _cell.length_c 201.378 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4I4L _atom_sites.fract_transf_matrix[1][1] 0.017876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 600 600 ADP ADP . H 3 SO4 B 1 500 500 SO4 SO4 . I 3 SO4 C 1 501 501 SO4 SO4 . J 3 SO4 C 1 502 505 SO4 SO4 . K 3 SO4 D 1 501 502 SO4 SO4 . L 3 SO4 E 1 501 503 SO4 SO4 . M 3 SO4 F 1 501 504 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 2 8.818 -38.748 -19.488 1 113.07 ? PB ADP 600 A 1 HETATM 2 O O1B ADP . . . G 2 9.917 -38.557 -20.506 1 123.19 ? O1B ADP 600 A 1 HETATM 3 O O2B ADP . . . G 2 7.747 -37.69 -19.558 1 108.35 ? O2B ADP 600 A 1 HETATM 4 O O3B ADP . . . G 2 9.288 -39.039 -18.084 1 110.55 ? O3B ADP 600 A 1 HETATM 5 P PA ADP . . . G 2 7.523 -40.353 -21.434 1 117.03 ? PA ADP 600 A 1 HETATM 6 O O1A ADP . . . G 2 6.105 -39.842 -21.532 1 112.55 ? O1A ADP 600 A 1 HETATM 7 O O2A ADP . . . G 2 8.57 -39.925 -22.434 1 126.03 ? O2A ADP 600 A 1 HETATM 8 O O3A ADP . . . G 2 8.055 -40.101 -19.93 1 112.2 ? O3A ADP 600 A 1 HETATM 9 O O5' ADP . . . G 2 7.445 -41.95 -21.575 1 119.3 ? O5' ADP 600 A 1 HETATM 10 C C5' ADP . . . G 2 7.479 -42.483 -22.897 1 127.24 ? C5' ADP 600 A 1 HETATM 11 C C4' ADP . . . G 2 6.76 -43.82 -22.929 1 126.97 ? C4' ADP 600 A 1 HETATM 12 O O4' ADP . . . G 2 6.866 -44.46 -21.659 1 121.44 ? O4' ADP 600 A 1 HETATM 13 C C3' ADP . . . G 2 5.277 -43.648 -23.216 1 124.74 ? C3' ADP 600 A 1 HETATM 14 O O3' ADP . . . G 2 4.981 -44.069 -24.548 1 133.35 ? O3' ADP 600 A 1 HETATM 15 C C2' ADP . . . G 2 4.557 -44.539 -22.227 1 119.33 ? C2' ADP 600 A 1 HETATM 16 O O2' ADP . . . G 2 3.867 -45.594 -22.906 1 124.24 ? O2' ADP 600 A 1 HETATM 17 C C1' ADP . . . G 2 5.643 -45.125 -21.345 1 117.6 ? C1' ADP 600 A 1 HETATM 18 N N9 ADP . . . G 2 5.311 -44.825 -19.941 1 109.95 ? N9 ADP 600 A 1 HETATM 19 C C8 ADP . . . G 2 5.869 -43.839 -19.218 1 106.76 ? C8 ADP 600 A 1 HETATM 20 N N7 ADP . . . G 2 5.362 -43.81 -17.962 1 101.19 ? N7 ADP 600 A 1 HETATM 21 C C5 ADP . . . G 2 4.456 -44.798 -17.877 1 100.94 ? C5 ADP 600 A 1 HETATM 22 C C6 ADP . . . G 2 3.558 -45.317 -16.827 1 98.04 ? C6 ADP 600 A 1 HETATM 23 N N6 ADP . . . G 2 3.544 -44.745 -15.602 1 94.27 ? N6 ADP 600 A 1 HETATM 24 N N1 ADP . . . G 2 2.765 -46.368 -17.133 1 100.77 ? N1 ADP 600 A 1 HETATM 25 C C2 ADP . . . G 2 2.785 -46.936 -18.355 1 105.71 ? C2 ADP 600 A 1 HETATM 26 N N3 ADP . . . G 2 3.578 -46.517 -19.359 1 108.57 ? N3 ADP 600 A 1 HETATM 27 C C4 ADP . . . G 2 4.423 -45.47 -19.184 1 106.59 ? C4 ADP 600 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #