data_4I54
#
_model_server_result.job_id            8Ir4Rj-jalJRNcELoXAk5w 
_model_server_result.datetime_utc      '2024-11-28 07:48:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4I54 
#
_exptl.entry_id    4I54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.89 
_cell.angle_gamma         90 
_cell.entry_id            4I54 
_cell.length_a            65.324 
_cell.length_b            68.775 
_cell.length_c            94.443 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,W 1 1 
B,M,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 76 A CYS 119 1_555 A SG CYS 89 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf5 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 A SG CYS 245 A CYS 378 1_555 A SG CYS 306 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 A SG CYS 252 A CYS 385 1_555 A SG CYS 279 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 B SG CYS 11 B CYS 54 1_555 B SG CYS 31 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf9 B SG CYS 76 B CYS 119 1_555 B SG CYS 89 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 B SG CYS 102 B CYS 218 1_555 B SG CYS 131 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf11 B SG CYS 112 B CYS 228 1_555 B SG CYS 123 B CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 B SG CYS 180 B CYS 296 1_555 B SG CYS 199 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf13 B SG CYS 245 B CYS 378 1_555 B SG CYS 306 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 B SG CYS 252 B CYS 385 1_555 B SG CYS 279 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 118 A ASN 234 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 146 A ASN 262 1_555 F C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 A ND2 ASN 160 A ASN 276 1_555 G C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 A ND2 ASN 173 A ASN 289 1_555 H C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? 
covale ? covale5 A ND2 ASN 179 A ASN 295 1_555 I C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale6 A ND2 ASN 202 A ASN 334 1_555 J C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale7 A ND2 ASN 223 A ASN 355 1_555 K C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? 
covale ? covale8 A ND2 ASN 253 A ASN 386 1_555 L C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale9 B ND2 ASN 118 B ASN 234 1_555 N C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
covale ? covale10 B ND2 ASN 125 B ASN 241 1_555 T C1 NAG . B NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale11 B ND2 ASN 146 B ASN 262 1_555 O C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale12 B ND2 ASN 160 B ASN 276 1_555 P C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale13 B ND2 ASN 173 B ASN 289 1_555 Q C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale14 B ND2 ASN 179 B ASN 295 1_555 R C1 NAG . B NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale15 B ND2 ASN 253 B ASN 386 1_555 S C1 NAG . B NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale16 B ND2 ASN 309 B ASN 448 1_555 U C1 NAG . B NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 133 n n 
N1 C6 EPE sing 134 n n 
N1 C9 EPE sing 135 n n 
C2 C3 EPE sing 136 n n 
C2 H21 EPE sing 137 n n 
C2 H22 EPE sing 138 n n 
C3 N4 EPE sing 139 n n 
C3 H31 EPE sing 140 n n 
C3 H32 EPE sing 141 n n 
N4 C5 EPE sing 142 n n 
N4 C7 EPE sing 143 n n 
C5 C6 EPE sing 144 n n 
C5 H51 EPE sing 145 n n 
C5 H52 EPE sing 146 n n 
C6 H61 EPE sing 147 n n 
C6 H62 EPE sing 148 n n 
C7 C8 EPE sing 149 n n 
C7 H71 EPE sing 150 n n 
C7 H72 EPE sing 151 n n 
C8 O8 EPE sing 152 n n 
C8 H81 EPE sing 153 n n 
C8 H82 EPE sing 154 n n 
O8 HO8 EPE sing 155 n n 
C9 C10 EPE sing 156 n n 
C9 H91 EPE sing 157 n n 
C9 H92 EPE sing 158 n n 
C10 S EPE sing 159 n n 
C10 H101 EPE sing 160 n n 
C10 H102 EPE sing 161 n n 
S O1S EPE doub 162 n n 
S O2S EPE doub 163 n n 
S O3S EPE sing 164 n n 
O3S HOS3 EPE sing 165 n n 
#
_atom_sites.entry_id                     4I54 
_atom_sites.fract_transf_matrix[1][1]    0.015308 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000238 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01059 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1C1 A 1 501 1 1C1 D1C . 
D 3 EPE A 1 502 500 EPE EPE . 
E 4 NAG A 1 503 501 NAG NAG . 
F 4 NAG A 1 504 502 NAG NAG . 
G 4 NAG A 1 505 503 NAG NAG . 
H 4 NAG A 1 506 506 NAG NAG . 
I 4 NAG A 1 507 505 NAG NAG . 
J 4 NAG A 1 508 506 NAG NAG . 
K 4 NAG A 1 509 509 NAG NAG . 
L 4 NAG A 1 510 508 NAG NAG . 
M 2 1C1 B 1 501 1 1C1 D1C . 
N 4 NAG B 1 502 502 NAG NAG . 
O 4 NAG B 1 503 502 NAG NAG . 
P 4 NAG B 1 504 503 NAG NAG . 
Q 4 NAG B 1 505 504 NAG NAG . 
R 4 NAG B 1 506 505 NAG NAG . 
S 4 NAG B 1 507 506 NAG NAG . 
T 4 NAG B 1 508 507 NAG NAG . 
U 4 NAG B 1 509 508 NAG NAG . 
V 3 EPE B 1 510 509 EPE EPE . 
W 5 HOH A 1 601 1 HOH HOH . 
W 5 HOH A 2 602 2 HOH HOH . 
W 5 HOH A 3 603 3 HOH HOH . 
W 5 HOH A 4 604 5 HOH HOH . 
W 5 HOH A 5 605 6 HOH HOH . 
W 5 HOH A 6 606 7 HOH HOH . 
W 5 HOH A 7 607 14 HOH HOH . 
W 5 HOH A 8 608 15 HOH HOH . 
W 5 HOH A 9 609 16 HOH HOH . 
W 5 HOH A 10 610 17 HOH HOH . 
W 5 HOH A 11 611 18 HOH HOH . 
W 5 HOH A 12 612 19 HOH HOH . 
W 5 HOH A 13 613 20 HOH HOH . 
W 5 HOH A 14 614 23 HOH HOH . 
W 5 HOH A 15 615 24 HOH HOH . 
W 5 HOH A 16 616 25 HOH HOH . 
W 5 HOH A 17 617 26 HOH HOH . 
X 5 HOH B 1 601 4 HOH HOH . 
X 5 HOH B 2 602 8 HOH HOH . 
X 5 HOH B 3 603 9 HOH HOH . 
X 5 HOH B 4 604 10 HOH HOH . 
X 5 HOH B 5 605 11 HOH HOH . 
X 5 HOH B 6 606 12 HOH HOH . 
X 5 HOH B 7 607 13 HOH HOH . 
X 5 HOH B 8 608 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . D 3 -3.877 8.156 -4.964 1 43.73 ? N1 EPE 502 A 1 
HETATM 2 C C2 EPE . . . D 3 -4.833 7.379 -4.165 1 32.55 ? C2 EPE 502 A 1 
HETATM 3 C C3 EPE . . . D 3 -6.112 7.253 -4.986 1 48.86 ? C3 EPE 502 A 1 
HETATM 4 N N4 EPE . . . D 3 -5.906 6.919 -6.39 1 48.78 ? N4 EPE 502 A 1 
HETATM 5 C C5 EPE . . . D 3 -4.759 7.503 -7.07 1 32.88 ? C5 EPE 502 A 1 
HETATM 6 C C6 EPE . . . D 3 -3.534 7.416 -6.191 1 41.17 ? C6 EPE 502 A 1 
HETATM 7 C C7 EPE . . . D 3 -7.113 6.645 -7.173 1 51.61 ? C7 EPE 502 A 1 
HETATM 8 C C8 EPE . . . D 3 -6.993 5.596 -8.287 1 34.99 ? C8 EPE 502 A 1 
HETATM 9 O O8 EPE . . . D 3 -6.15 6.028 -9.345 1 33.38 ? O8 EPE 502 A 1 
HETATM 10 C C9 EPE . . . D 3 -2.666 8.477 -4.21 1 37.54 ? C9 EPE 502 A 1 
HETATM 11 C C10 EPE . . . D 3 -3.062 9.413 -3.076 1 36.3 ? C10 EPE 502 A 1 
HETATM 12 S S EPE . . . D 3 -1.587 10.134 -2.344 1 50.22 ? S EPE 502 A 1 
HETATM 13 O O1S EPE . . . D 3 -0.844 10.878 -3.354 1 65.19 ? O1S EPE 502 A 1 
HETATM 14 O O2S EPE . . . D 3 -0.735 9.043 -1.877 1 35.21 ? O2S EPE 502 A 1 
HETATM 15 O O3S EPE . . . D 3 -1.964 11.054 -1.291 1 52.77 ? O3S EPE 502 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#