data_4I5V # _model_server_result.job_id Jl352gAPtTVx1HQenxxxiQ _model_server_result.datetime_utc '2024-11-23 00:55:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4I5V # _exptl.entry_id 4I5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 836.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.92 _cell.angle_gamma 90 _cell.entry_id 4I5V _cell.length_a 203.353 _cell.length_b 52.781 _cell.length_c 70.764 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,B,C,D,E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 140 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 148 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 140 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 N10 O19 P4' _chem_comp.formula_weight 836.387 _chem_comp.id B4P _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A B4P doub 70 n n PA O2A B4P sing 71 n n PA O3A B4P sing 72 n n PA O5E B4P sing 73 n n O2A HOA2 B4P sing 74 n n O3A PB B4P sing 75 n n PB O1B B4P doub 76 n n PB O2B B4P sing 77 n n PB O3B B4P sing 78 n n O2B HOB2 B4P sing 79 n n O3B PG B4P sing 80 n n PG O1G B4P doub 81 n n PG O2G B4P sing 82 n n PG O3G B4P sing 83 n n O2G HOG2 B4P sing 84 n n O3G PD B4P sing 85 n n PD O1D B4P doub 86 n n PD O2D B4P sing 87 n n PD O5F B4P sing 88 n n O2D HOD2 B4P sing 89 n n O5E C5E B4P sing 90 n n C5E C4E B4P sing 91 n n C5E H51A B4P sing 92 n n C5E H52A B4P sing 93 n n C4E O4E B4P sing 94 n n C4E C3E B4P sing 95 n n C4E H4E B4P sing 96 n n O4E C1E B4P sing 97 n n C3E O3E B4P sing 98 n n C3E C2E B4P sing 99 n n C3E H3E B4P sing 100 n n O3E HO3A B4P sing 101 n n C2E O2E B4P sing 102 n n C2E C1E B4P sing 103 n n C2E H2E B4P sing 104 n n O2E HO2A B4P sing 105 n n C1E N9A B4P sing 106 n n C1E H1E B4P sing 107 n n N9A C8A B4P sing 108 n y N9A C4A B4P sing 109 n y C8A N7A B4P doub 110 n y C8A H8A B4P sing 111 n n N7A C5A B4P sing 112 n y C5A C6A B4P sing 113 n y C5A C4A B4P doub 114 n y C6A N6A B4P sing 115 n n C6A N1A B4P doub 116 n y N6A H61A B4P sing 117 n n N6A H62A B4P sing 118 n n N1A C2A B4P sing 119 n y C2A N3A B4P doub 120 n y C2A H2A B4P sing 121 n n N3A C4A B4P sing 122 n y O5F C5F B4P sing 123 n n C5F C4F B4P sing 124 n n C5F H51B B4P sing 125 n n C5F H52B B4P sing 126 n n C4F O4F B4P sing 127 n n C4F C3F B4P sing 128 n n C4F H4F B4P sing 129 n n O4F C1F B4P sing 130 n n C3F O3F B4P sing 131 n n C3F C2F B4P sing 132 n n C3F H3F B4P sing 133 n n O3F HO3B B4P sing 134 n n C2F O2F B4P sing 135 n n C2F C1F B4P sing 136 n n C2F H2F B4P sing 137 n n O2F HO2B B4P sing 138 n n C1F N9B B4P sing 139 n n C1F H1F B4P sing 140 n n N9B C8B B4P sing 141 n y N9B C4B B4P sing 142 n y C8B N7B B4P doub 143 n y C8B H8B B4P sing 144 n n N7B C5B B4P sing 145 n y C5B C6B B4P sing 146 n y C5B C4B B4P doub 147 n y C6B N6B B4P sing 148 n n C6B N1B B4P doub 149 n y N6B H61B B4P sing 150 n n N6B H62B B4P sing 151 n n N1B C2B B4P sing 152 n y C2B N3B B4P doub 153 n y C2B H2B B4P sing 154 n n N3B C4B B4P sing 155 n y # _atom_sites.entry_id 4I5V _atom_sites.fract_transf_matrix[1][1] 0.004918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00086 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B4P A 1 401 1 B4P B4P . D 2 B4P B 1 401 1 B4P B4P . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 3 HOH HOH . E 3 HOH A 3 503 5 HOH HOH . E 3 HOH A 4 504 6 HOH HOH . E 3 HOH A 5 505 8 HOH HOH . E 3 HOH A 6 506 10 HOH HOH . E 3 HOH A 7 507 11 HOH HOH . E 3 HOH A 8 508 12 HOH HOH . E 3 HOH A 9 509 13 HOH HOH . E 3 HOH A 10 510 14 HOH HOH . E 3 HOH A 11 511 18 HOH HOH . E 3 HOH A 12 512 19 HOH HOH . E 3 HOH A 13 513 20 HOH HOH . E 3 HOH A 14 514 21 HOH HOH . E 3 HOH A 15 515 22 HOH HOH . E 3 HOH A 16 516 23 HOH HOH . E 3 HOH A 17 517 24 HOH HOH . E 3 HOH A 18 518 25 HOH HOH . E 3 HOH A 19 519 27 HOH HOH . E 3 HOH A 20 520 28 HOH HOH . E 3 HOH A 21 521 29 HOH HOH . E 3 HOH A 22 522 30 HOH HOH . E 3 HOH A 23 523 31 HOH HOH . E 3 HOH A 24 524 32 HOH HOH . E 3 HOH A 25 525 33 HOH HOH . E 3 HOH A 26 526 34 HOH HOH . E 3 HOH A 27 527 35 HOH HOH . E 3 HOH A 28 528 37 HOH HOH . E 3 HOH A 29 529 38 HOH HOH . E 3 HOH A 30 530 46 HOH HOH . E 3 HOH A 31 531 52 HOH HOH . E 3 HOH A 32 532 53 HOH HOH . E 3 HOH A 33 533 54 HOH HOH . E 3 HOH A 34 534 55 HOH HOH . E 3 HOH A 35 535 59 HOH HOH . E 3 HOH A 36 536 60 HOH HOH . E 3 HOH A 37 537 61 HOH HOH . F 3 HOH B 1 501 2 HOH HOH . F 3 HOH B 2 502 4 HOH HOH . F 3 HOH B 3 503 7 HOH HOH . F 3 HOH B 4 504 9 HOH HOH . F 3 HOH B 5 505 15 HOH HOH . F 3 HOH B 6 506 17 HOH HOH . F 3 HOH B 7 507 26 HOH HOH . F 3 HOH B 8 508 42 HOH HOH . F 3 HOH B 9 509 43 HOH HOH . F 3 HOH B 10 510 44 HOH HOH . F 3 HOH B 11 511 48 HOH HOH . F 3 HOH B 12 512 51 HOH HOH . F 3 HOH B 13 513 56 HOH HOH . F 3 HOH B 14 514 57 HOH HOH . F 3 HOH B 15 515 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA B4P . . . D 2 -1.412 8.997 47.572 1 86.67 ? PA B4P 401 B 1 HETATM 2 O O1A B4P . . . D 2 -2.521 9.601 46.72 1 80.1 ? O1A B4P 401 B 1 HETATM 3 O O2A B4P . . . D 2 -0.198 9.913 47.65 1 84.78 ? O2A B4P 401 B 1 HETATM 4 O O3A B4P . . . D 2 -1.9 8.802 49.06 1 80.53 ? O3A B4P 401 B 1 HETATM 5 P PB B4P . . . D 2 -1.935 7.355 49.717 1 77.3 ? PB B4P 401 B 1 HETATM 6 O O1B B4P . . . D 2 -2.816 6.376 48.97 1 59.03 ? O1B B4P 401 B 1 HETATM 7 O O2B B4P . . . D 2 -2.364 7.59 51.207 1 88.78 ? O2B B4P 401 B 1 HETATM 8 O O3B B4P . . . D 2 -0.536 6.68 49.649 1 80.45 ? O3B B4P 401 B 1 HETATM 9 P PG B4P . . . D 2 0.299 6.754 50.942 1 75.45 ? PG B4P 401 B 1 HETATM 10 O O1G B4P . . . D 2 1.532 5.816 50.786 1 81.97 ? O1G B4P 401 B 1 HETATM 11 O O2G B4P . . . D 2 0.6 8.307 51.189 1 65.56 ? O2G B4P 401 B 1 HETATM 12 O O3G B4P . . . D 2 -0.602 6.107 52.014 1 86.18 ? O3G B4P 401 B 1 HETATM 13 P PD B4P . . . D 2 -0.094 5.464 53.326 1 86.18 ? PD B4P 401 B 1 HETATM 14 O O1D B4P . . . D 2 1.063 6.272 53.877 1 80.72 ? O1D B4P 401 B 1 HETATM 15 O O2D B4P . . . D 2 -1.284 5.474 54.303 1 84.91 ? O2D B4P 401 B 1 HETATM 16 O O5E B4P . . . D 2 -0.993 7.517 47.037 1 67.22 ? O5E B4P 401 B 1 HETATM 17 C C5E B4P . . . D 2 -0.16 7.492 45.933 1 68.68 ? C5E B4P 401 B 1 HETATM 18 C C4E B4P . . . D 2 0.656 6.287 45.752 1 71.42 ? C4E B4P 401 B 1 HETATM 19 O O4E B4P . . . D 2 1.858 6.593 45.127 1 62.67 ? O4E B4P 401 B 1 HETATM 20 C C3E B4P . . . D 2 1.036 5.74 47.087 1 79.73 ? C3E B4P 401 B 1 HETATM 21 O O3E B4P . . . D 2 1.374 4.436 46.942 1 73.15 ? O3E B4P 401 B 1 HETATM 22 C C2E B4P . . . D 2 2.16 6.578 47.443 1 69.76 ? C2E B4P 401 B 1 HETATM 23 O O2E B4P . . . D 2 2.909 5.901 48.464 1 69.97 ? O2E B4P 401 B 1 HETATM 24 C C1E B4P . . . D 2 2.886 6.726 46.16 1 68.05 ? C1E B4P 401 B 1 HETATM 25 N N9A B4P . . . D 2 3.605 7.949 46.027 1 62.76 ? N9A B4P 401 B 1 HETATM 26 C C8A B4P . . . D 2 3.405 9.088 46.701 1 65.5 ? C8A B4P 401 B 1 HETATM 27 N N7A B4P . . . D 2 4.259 10.015 46.239 1 61.08 ? N7A B4P 401 B 1 HETATM 28 C C5A B4P . . . D 2 5 9.472 45.251 1 60.12 ? C5A B4P 401 B 1 HETATM 29 C C6A B4P . . . D 2 6.013 9.961 44.434 1 59.51 ? C6A B4P 401 B 1 HETATM 30 N N6A B4P . . . D 2 6.476 11.304 44.558 1 65.25 ? N6A B4P 401 B 1 HETATM 31 N N1A B4P . . . D 2 6.544 9.127 43.518 1 54.63 ? N1A B4P 401 B 1 HETATM 32 C C2A B4P . . . D 2 6.126 7.86 43.397 1 54.17 ? C2A B4P 401 B 1 HETATM 33 N N3A B4P . . . D 2 5.152 7.382 44.19 1 59.71 ? N3A B4P 401 B 1 HETATM 34 C C4A B4P . . . D 2 4.575 8.163 45.124 1 62.22 ? C4A B4P 401 B 1 HETATM 35 O O5F B4P . . . D 2 0.259 3.94 53.153 1 79.48 ? O5F B4P 401 B 1 HETATM 36 C C5F B4P . . . D 2 -0.567 3.136 52.429 1 80.98 ? C5F B4P 401 B 1 HETATM 37 C C4F B4P . . . D 2 0.062 2.418 51.246 1 81.17 ? C4F B4P 401 B 1 HETATM 38 O O4F B4P . . . D 2 -0.625 1.147 51.124 1 86.46 ? O4F B4P 401 B 1 HETATM 39 C C3F B4P . . . D 2 0.001 3.066 49.912 1 84.47 ? C3F B4P 401 B 1 HETATM 40 O O3F B4P . . . D 2 1.111 2.677 49.178 1 86.45 ? O3F B4P 401 B 1 HETATM 41 C C2F B4P . . . D 2 -1.158 2.491 49.307 1 89.52 ? C2F B4P 401 B 1 HETATM 42 O O2F B4P . . . D 2 -1.019 2.36 47.973 1 76.81 ? O2F B4P 401 B 1 HETATM 43 C C1F B4P . . . D 2 -1.188 1.101 49.862 1 91.26 ? C1F B4P 401 B 1 HETATM 44 N N9B B4P . . . D 2 -2.554 0.534 49.819 1 99.68 ? N9B B4P 401 B 1 HETATM 45 C C8B B4P . . . D 2 -3.798 0.997 49.996 1 99.98 ? C8B B4P 401 B 1 HETATM 46 N N7B B4P . . . D 2 -4.616 -0.054 49.789 1 102.84 ? N7B B4P 401 B 1 HETATM 47 C C5B B4P . . . D 2 -3.862 -1.152 49.479 1 101.28 ? C5B B4P 401 B 1 HETATM 48 C C6B B4P . . . D 2 -4.154 -2.471 49.175 1 101.85 ? C6B B4P 401 B 1 HETATM 49 N N6B B4P . . . D 2 -5.508 -2.915 49.146 1 105.42 ? N6B B4P 401 B 1 HETATM 50 N N1B B4P . . . D 2 -3.156 -3.332 48.904 1 100.78 ? N1B B4P 401 B 1 HETATM 51 C C2B B4P . . . D 2 -1.876 -2.939 48.921 1 97.43 ? C2B B4P 401 B 1 HETATM 52 N N3B B4P . . . D 2 -1.569 -1.671 49.215 1 96.52 ? N3B B4P 401 B 1 HETATM 53 C C4B B4P . . . D 2 -2.538 -0.773 49.491 1 98.7 ? C4B B4P 401 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #