data_4I5W # _model_server_result.job_id up30g6qk4hNXGXNDlCBiKQ _model_server_result.datetime_utc '2024-11-23 05:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4I5W # _exptl.entry_id 4I5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I5W _cell.length_a 52.846 _cell.length_b 70.327 _cell.length_c 174.237 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 140 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 148 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 140 _struct_conn.ptnr2_symmetry 1_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.067 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4I5W _atom_sites.fract_transf_matrix[1][1] 0.018923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 401 2 PO4 PO4 . D 3 AMP A 1 402 1 AMP AMP . E 3 AMP A 1 403 1 AMP AMP . F 3 AMP B 1 401 1 AMP AMP . G 3 AMP B 1 402 1 AMP AMP . H 4 HOH A 1 501 3 HOH HOH . H 4 HOH A 2 502 5 HOH HOH . H 4 HOH A 3 503 7 HOH HOH . H 4 HOH A 4 504 8 HOH HOH . H 4 HOH A 5 505 12 HOH HOH . H 4 HOH A 6 506 13 HOH HOH . H 4 HOH A 7 507 18 HOH HOH . H 4 HOH A 8 508 20 HOH HOH . H 4 HOH A 9 509 24 HOH HOH . H 4 HOH A 10 510 25 HOH HOH . H 4 HOH A 11 511 26 HOH HOH . H 4 HOH A 12 512 28 HOH HOH . H 4 HOH A 13 513 37 HOH HOH . H 4 HOH A 14 514 40 HOH HOH . H 4 HOH A 15 515 42 HOH HOH . H 4 HOH A 16 516 47 HOH HOH . H 4 HOH A 17 517 53 HOH HOH . H 4 HOH A 18 518 54 HOH HOH . H 4 HOH A 19 519 56 HOH HOH . H 4 HOH A 20 520 59 HOH HOH . H 4 HOH A 21 521 60 HOH HOH . H 4 HOH A 22 522 62 HOH HOH . H 4 HOH A 23 523 65 HOH HOH . H 4 HOH A 24 524 66 HOH HOH . H 4 HOH A 25 525 68 HOH HOH . H 4 HOH A 26 526 69 HOH HOH . H 4 HOH A 27 527 70 HOH HOH . H 4 HOH A 28 528 76 HOH HOH . H 4 HOH A 29 529 80 HOH HOH . I 4 HOH B 1 501 1 HOH HOH . I 4 HOH B 2 502 4 HOH HOH . I 4 HOH B 3 503 9 HOH HOH . I 4 HOH B 4 504 10 HOH HOH . I 4 HOH B 5 505 11 HOH HOH . I 4 HOH B 6 506 14 HOH HOH . I 4 HOH B 7 507 15 HOH HOH . I 4 HOH B 8 508 17 HOH HOH . I 4 HOH B 9 509 19 HOH HOH . I 4 HOH B 10 510 21 HOH HOH . I 4 HOH B 11 511 22 HOH HOH . I 4 HOH B 12 512 23 HOH HOH . I 4 HOH B 13 513 29 HOH HOH . I 4 HOH B 14 514 30 HOH HOH . I 4 HOH B 15 515 33 HOH HOH . I 4 HOH B 16 516 34 HOH HOH . I 4 HOH B 17 517 35 HOH HOH . I 4 HOH B 18 518 36 HOH HOH . I 4 HOH B 19 519 43 HOH HOH . I 4 HOH B 20 520 44 HOH HOH . I 4 HOH B 21 521 48 HOH HOH . I 4 HOH B 22 522 51 HOH HOH . I 4 HOH B 23 523 55 HOH HOH . I 4 HOH B 24 524 58 HOH HOH . I 4 HOH B 25 525 78 HOH HOH . I 4 HOH B 26 526 79 HOH HOH . I 4 HOH B 27 527 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 3 4.796 -28.515 39.216 1 57.59 ? P AMP 401 B 1 HETATM 2 O O1P AMP . . . F 3 4.017 -29.454 38.314 1 52.32 ? O1P AMP 401 B 1 HETATM 3 O O2P AMP . . . F 3 4.713 -27.025 38.948 1 53.99 ? O2P AMP 401 B 1 HETATM 4 O O3P AMP . . . F 3 4.355 -28.796 40.628 1 61.53 ? O3P AMP 401 B 1 HETATM 5 O O5' AMP . . . F 3 6.326 -28.958 39.249 1 58.27 ? O5' AMP 401 B 1 HETATM 6 C C5' AMP . . . F 3 7.048 -29.049 40.474 1 57.25 ? C5' AMP 401 B 1 HETATM 7 C C4' AMP . . . F 3 7.831 -30.334 40.552 1 57.45 ? C4' AMP 401 B 1 HETATM 8 O O4' AMP . . . F 3 8.844 -30.232 41.591 1 59.53 ? O4' AMP 401 B 1 HETATM 9 C C3' AMP . . . F 3 7.002 -31.585 40.885 1 56.52 ? C3' AMP 401 B 1 HETATM 10 O O3' AMP . . . F 3 7.444 -32.67 40.07 1 62.87 ? O3' AMP 401 B 1 HETATM 11 C C2' AMP . . . F 3 7.377 -31.859 42.339 1 57.45 ? C2' AMP 401 B 1 HETATM 12 O O2' AMP . . . F 3 7.219 -33.201 42.749 1 60.27 ? O2' AMP 401 B 1 HETATM 13 C C1' AMP . . . F 3 8.834 -31.425 42.334 1 64.79 ? C1' AMP 401 B 1 HETATM 14 N N9 AMP . . . F 3 9.407 -31.166 43.654 1 65.65 ? N9 AMP 401 B 1 HETATM 15 C C8 AMP . . . F 3 8.779 -30.79 44.784 1 61.42 ? C8 AMP 401 B 1 HETATM 16 N N7 AMP . . . F 3 9.662 -30.681 45.812 1 63.58 ? N7 AMP 401 B 1 HETATM 17 C C5 AMP . . . F 3 10.883 -31 45.339 1 67.26 ? C5 AMP 401 B 1 HETATM 18 C C6 AMP . . . F 3 12.262 -31.093 45.874 1 66.75 ? C6 AMP 401 B 1 HETATM 19 N N6 AMP . . . F 3 12.547 -30.816 47.168 1 61.67 ? N6 AMP 401 B 1 HETATM 20 N N1 AMP . . . F 3 13.238 -31.468 45.022 1 70.81 ? N1 AMP 401 B 1 HETATM 21 C C2 AMP . . . F 3 12.993 -31.759 43.734 1 66.84 ? C2 AMP 401 B 1 HETATM 22 N N3 AMP . . . F 3 11.773 -31.7 43.185 1 67.37 ? N3 AMP 401 B 1 HETATM 23 C C4 AMP . . . F 3 10.701 -31.331 43.92 1 67.83 ? C4 AMP 401 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #