data_4I5X # _model_server_result.job_id JqgTMgeSWg2Icw8NF0v5Dg _model_server_result.datetime_utc '2024-11-24 18:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4I5X # _exptl.entry_id 4I5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I5X _cell.length_a 89.402 _cell.length_b 89.402 _cell.length_c 77.874 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 268 n n PA O2A NAP sing 269 n n PA O5B NAP sing 270 n n PA O3 NAP sing 271 n n O2A HOA2 NAP sing 272 n n O5B C5B NAP sing 273 n n C5B C4B NAP sing 274 n n C5B H51A NAP sing 275 n n C5B H52A NAP sing 276 n n C4B O4B NAP sing 277 n n C4B C3B NAP sing 278 n n C4B H4B NAP sing 279 n n O4B C1B NAP sing 280 n n C3B O3B NAP sing 281 n n C3B C2B NAP sing 282 n n C3B H3B NAP sing 283 n n O3B HO3A NAP sing 284 n n C2B O2B NAP sing 285 n n C2B C1B NAP sing 286 n n C2B H2B NAP sing 287 n n O2B P2B NAP sing 288 n n C1B N9A NAP sing 289 n n C1B H1B NAP sing 290 n n N9A C8A NAP sing 291 n y N9A C4A NAP sing 292 n y C8A N7A NAP doub 293 n y C8A H8A NAP sing 294 n n N7A C5A NAP sing 295 n y C5A C6A NAP sing 296 n y C5A C4A NAP doub 297 n y C6A N6A NAP sing 298 n n C6A N1A NAP doub 299 n y N6A H61A NAP sing 300 n n N6A H62A NAP sing 301 n n N1A C2A NAP sing 302 n y C2A N3A NAP doub 303 n y C2A H2A NAP sing 304 n n N3A C4A NAP sing 305 n y O3 PN NAP sing 306 n n PN O1N NAP doub 307 n n PN O2N NAP sing 308 n n PN O5D NAP sing 309 n n O5D C5D NAP sing 310 n n C5D C4D NAP sing 311 n n C5D H51N NAP sing 312 n n C5D H52N NAP sing 313 n n C4D O4D NAP sing 314 n n C4D C3D NAP sing 315 n n C4D H4D NAP sing 316 n n O4D C1D NAP sing 317 n n C3D O3D NAP sing 318 n n C3D C2D NAP sing 319 n n C3D H3D NAP sing 320 n n O3D HO3N NAP sing 321 n n C2D O2D NAP sing 322 n n C2D C1D NAP sing 323 n n C2D H2D NAP sing 324 n n O2D HO2N NAP sing 325 n n C1D N1N NAP sing 326 n n C1D H1D NAP sing 327 n n N1N C2N NAP sing 328 n y N1N C6N NAP doub 329 n y C2N C3N NAP doub 330 n y C2N H2N NAP sing 331 n n C3N C7N NAP sing 332 n n C3N C4N NAP sing 333 n y C7N O7N NAP doub 334 n n C7N N7N NAP sing 335 n n N7N H71N NAP sing 336 n n N7N H72N NAP sing 337 n n C4N C5N NAP doub 338 n y C4N H4N NAP sing 339 n n C5N C6N NAP sing 340 n y C5N H5N NAP sing 341 n n C6N H6N NAP sing 342 n n P2B O1X NAP doub 343 n n P2B O2X NAP sing 344 n n P2B O3X NAP sing 345 n n O2X HOP2 NAP sing 346 n n O3X HOP3 NAP sing 347 n n # _atom_sites.entry_id 4I5X _atom_sites.fract_transf_matrix[1][1] 0.011185 _atom_sites.fract_transf_matrix[1][2] 0.006458 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLF A 1 401 317 FLF FLF . C 3 NAP A 1 402 350 NAP NAP . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 5 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 9 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 12 HOH HOH . D 4 HOH A 12 512 13 HOH HOH . D 4 HOH A 13 513 14 HOH HOH . D 4 HOH A 14 514 15 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 18 HOH HOH . D 4 HOH A 18 518 19 HOH HOH . D 4 HOH A 19 519 20 HOH HOH . D 4 HOH A 20 520 21 HOH HOH . D 4 HOH A 21 521 22 HOH HOH . D 4 HOH A 22 522 23 HOH HOH . D 4 HOH A 23 523 24 HOH HOH . D 4 HOH A 24 524 25 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 30 HOH HOH . D 4 HOH A 30 530 31 HOH HOH . D 4 HOH A 31 531 32 HOH HOH . D 4 HOH A 32 532 33 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 35 HOH HOH . D 4 HOH A 35 535 36 HOH HOH . D 4 HOH A 36 536 37 HOH HOH . D 4 HOH A 37 537 38 HOH HOH . D 4 HOH A 38 538 39 HOH HOH . D 4 HOH A 39 539 40 HOH HOH . D 4 HOH A 40 540 41 HOH HOH . D 4 HOH A 41 541 42 HOH HOH . D 4 HOH A 42 542 43 HOH HOH . D 4 HOH A 43 543 44 HOH HOH . D 4 HOH A 44 544 45 HOH HOH . D 4 HOH A 45 545 46 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 48 HOH HOH . D 4 HOH A 48 548 49 HOH HOH . D 4 HOH A 49 549 50 HOH HOH . D 4 HOH A 50 550 51 HOH HOH . D 4 HOH A 51 551 52 HOH HOH . D 4 HOH A 52 552 53 HOH HOH . D 4 HOH A 53 553 54 HOH HOH . D 4 HOH A 54 554 55 HOH HOH . D 4 HOH A 55 555 56 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 58 HOH HOH . D 4 HOH A 58 558 59 HOH HOH . D 4 HOH A 59 559 60 HOH HOH . D 4 HOH A 60 560 61 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 64 HOH HOH . D 4 HOH A 64 564 65 HOH HOH . D 4 HOH A 65 565 66 HOH HOH . D 4 HOH A 66 566 67 HOH HOH . D 4 HOH A 67 567 68 HOH HOH . D 4 HOH A 68 568 69 HOH HOH . D 4 HOH A 69 569 70 HOH HOH . D 4 HOH A 70 570 71 HOH HOH . D 4 HOH A 71 571 72 HOH HOH . D 4 HOH A 72 572 73 HOH HOH . D 4 HOH A 73 573 74 HOH HOH . D 4 HOH A 74 574 75 HOH HOH . D 4 HOH A 75 575 76 HOH HOH . D 4 HOH A 76 576 77 HOH HOH . D 4 HOH A 77 577 78 HOH HOH . D 4 HOH A 78 578 79 HOH HOH . D 4 HOH A 79 579 80 HOH HOH . D 4 HOH A 80 580 81 HOH HOH . D 4 HOH A 81 581 82 HOH HOH . D 4 HOH A 82 582 83 HOH HOH . D 4 HOH A 83 583 84 HOH HOH . D 4 HOH A 84 584 85 HOH HOH . D 4 HOH A 85 585 86 HOH HOH . D 4 HOH A 86 586 87 HOH HOH . D 4 HOH A 87 587 88 HOH HOH . D 4 HOH A 88 588 89 HOH HOH . D 4 HOH A 89 589 90 HOH HOH . D 4 HOH A 90 590 91 HOH HOH . D 4 HOH A 91 591 92 HOH HOH . D 4 HOH A 92 592 93 HOH HOH . D 4 HOH A 93 593 94 HOH HOH . D 4 HOH A 94 594 95 HOH HOH . D 4 HOH A 95 595 96 HOH HOH . D 4 HOH A 96 596 97 HOH HOH . D 4 HOH A 97 597 98 HOH HOH . D 4 HOH A 98 598 99 HOH HOH . D 4 HOH A 99 599 100 HOH HOH . D 4 HOH A 100 600 101 HOH HOH . D 4 HOH A 101 601 102 HOH HOH . D 4 HOH A 102 602 103 HOH HOH . D 4 HOH A 103 603 104 HOH HOH . D 4 HOH A 104 604 105 HOH HOH . D 4 HOH A 105 605 106 HOH HOH . D 4 HOH A 106 606 107 HOH HOH . D 4 HOH A 107 607 108 HOH HOH . D 4 HOH A 108 608 109 HOH HOH . D 4 HOH A 109 609 110 HOH HOH . D 4 HOH A 110 610 111 HOH HOH . D 4 HOH A 111 611 112 HOH HOH . D 4 HOH A 112 612 113 HOH HOH . D 4 HOH A 113 613 114 HOH HOH . D 4 HOH A 114 614 115 HOH HOH . D 4 HOH A 115 615 116 HOH HOH . D 4 HOH A 116 616 117 HOH HOH . D 4 HOH A 117 617 118 HOH HOH . D 4 HOH A 118 618 119 HOH HOH . D 4 HOH A 119 619 120 HOH HOH . D 4 HOH A 120 620 121 HOH HOH . D 4 HOH A 121 621 122 HOH HOH . D 4 HOH A 122 622 123 HOH HOH . D 4 HOH A 123 623 124 HOH HOH . D 4 HOH A 124 624 125 HOH HOH . D 4 HOH A 125 625 126 HOH HOH . D 4 HOH A 126 626 127 HOH HOH . D 4 HOH A 127 627 128 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 130 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 132 HOH HOH . D 4 HOH A 132 632 133 HOH HOH . D 4 HOH A 133 633 134 HOH HOH . D 4 HOH A 134 634 135 HOH HOH . D 4 HOH A 135 635 136 HOH HOH . D 4 HOH A 136 636 137 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 139 HOH HOH . D 4 HOH A 139 639 140 HOH HOH . D 4 HOH A 140 640 141 HOH HOH . D 4 HOH A 141 641 142 HOH HOH . D 4 HOH A 142 642 143 HOH HOH . D 4 HOH A 143 643 144 HOH HOH . D 4 HOH A 144 644 145 HOH HOH . D 4 HOH A 145 645 146 HOH HOH . D 4 HOH A 146 646 147 HOH HOH . D 4 HOH A 147 647 148 HOH HOH . D 4 HOH A 148 648 149 HOH HOH . D 4 HOH A 149 649 150 HOH HOH . D 4 HOH A 150 650 151 HOH HOH . D 4 HOH A 151 651 152 HOH HOH . D 4 HOH A 152 652 153 HOH HOH . D 4 HOH A 153 653 154 HOH HOH . D 4 HOH A 154 654 155 HOH HOH . D 4 HOH A 155 655 156 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 158 HOH HOH . D 4 HOH A 158 658 159 HOH HOH . D 4 HOH A 159 659 160 HOH HOH . D 4 HOH A 160 660 161 HOH HOH . D 4 HOH A 161 661 162 HOH HOH . D 4 HOH A 162 662 163 HOH HOH . D 4 HOH A 163 663 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 31.622 -26.096 -0.535 1 13.62 ? PA NAP 402 A 1 HETATM 2 O O1A NAP . . . C 3 32.413 -27.309 -0.122 1 14.5 ? O1A NAP 402 A 1 HETATM 3 O O2A NAP . . . C 3 30.696 -26.183 -1.706 1 14.65 ? O2A NAP 402 A 1 HETATM 4 O O5B NAP . . . C 3 32.701 -24.926 -0.858 1 17.32 ? O5B NAP 402 A 1 HETATM 5 C C5B NAP . . . C 3 32.264 -23.642 -1.309 1 18.67 ? C5B NAP 402 A 1 HETATM 6 C C4B NAP . . . C 3 33.452 -22.673 -1.374 1 22.97 ? C4B NAP 402 A 1 HETATM 7 O O4B NAP . . . C 3 34.406 -23.13 -2.335 1 20.78 ? O4B NAP 402 A 1 HETATM 8 C C3B NAP . . . C 3 33.062 -21.267 -1.805 1 21.3 ? C3B NAP 402 A 1 HETATM 9 O O3B NAP . . . C 3 33.79 -20.353 -0.973 1 22.87 ? O3B NAP 402 A 1 HETATM 10 C C2B NAP . . . C 3 33.493 -21.161 -3.256 1 22.69 ? C2B NAP 402 A 1 HETATM 11 O O2B NAP . . . C 3 34.013 -19.882 -3.588 1 26.49 ? O2B NAP 402 A 1 HETATM 12 C C1B NAP . . . C 3 34.621 -22.154 -3.35 1 20.33 ? C1B NAP 402 A 1 HETATM 13 N N9A NAP . . . C 3 34.635 -22.863 -4.649 1 21.16 ? N9A NAP 402 A 1 HETATM 14 C C8A NAP . . . C 3 33.568 -23.306 -5.337 1 18.32 ? C8A NAP 402 A 1 HETATM 15 N N7A NAP . . . C 3 33.956 -23.938 -6.468 1 20.62 ? N7A NAP 402 A 1 HETATM 16 C C5A NAP . . . C 3 35.306 -23.871 -6.517 1 19.54 ? C5A NAP 402 A 1 HETATM 17 C C6A NAP . . . C 3 36.357 -24.316 -7.454 1 18.74 ? C6A NAP 402 A 1 HETATM 18 N N6A NAP . . . C 3 36.015 -24.98 -8.586 1 15.02 ? N6A NAP 402 A 1 HETATM 19 N N1A NAP . . . C 3 37.646 -24.058 -7.132 1 17.72 ? N1A NAP 402 A 1 HETATM 20 C C2A NAP . . . C 3 37.978 -23.404 -6.003 1 23.24 ? C2A NAP 402 A 1 HETATM 21 N N3A NAP . . . C 3 37.072 -22.954 -5.106 1 25.23 ? N3A NAP 402 A 1 HETATM 22 C C4A NAP . . . C 3 35.746 -23.162 -5.316 1 19.76 ? C4A NAP 402 A 1 HETATM 23 O O3 NAP . . . C 3 30.972 -25.534 0.835 1 18.95 ? O3 NAP 402 A 1 HETATM 24 P PN NAP . . . C 3 29.439 -25.249 1.273 1 17.97 ? PN NAP 402 A 1 HETATM 25 O O1N NAP . . . C 3 28.9 -24.017 0.614 1 20.62 ? O1N NAP 402 A 1 HETATM 26 O O2N NAP . . . C 3 29.436 -25.3 2.78 1 21.76 ? O2N NAP 402 A 1 HETATM 27 O O5D NAP . . . C 3 28.619 -26.538 0.767 1 18.44 ? O5D NAP 402 A 1 HETATM 28 C C5D NAP . . . C 3 27.925 -26.455 -0.47 1 15.61 ? C5D NAP 402 A 1 HETATM 29 C C4D NAP . . . C 3 26.424 -26.332 -0.257 1 16.83 ? C4D NAP 402 A 1 HETATM 30 O O4D NAP . . . C 3 25.914 -27.38 0.561 1 17.07 ? O4D NAP 402 A 1 HETATM 31 C C3D NAP . . . C 3 26.011 -25.059 0.45 1 17.34 ? C3D NAP 402 A 1 HETATM 32 O O3D NAP . . . C 3 26.001 -23.904 -0.39 1 22.18 ? O3D NAP 402 A 1 HETATM 33 C C2D NAP . . . C 3 24.631 -25.439 0.921 1 17.56 ? C2D NAP 402 A 1 HETATM 34 O O2D NAP . . . C 3 23.763 -25.391 -0.212 1 18.84 ? O2D NAP 402 A 1 HETATM 35 C C1D NAP . . . C 3 24.794 -26.892 1.31 1 14.43 ? C1D NAP 402 A 1 HETATM 36 N N1N NAP . . . C 3 25.052 -27.055 2.748 1 18.97 ? N1N NAP 402 A 1 HETATM 37 C C2N NAP . . . C 3 24.125 -27.658 3.497 1 16.48 ? C2N NAP 402 A 1 HETATM 38 C C3N NAP . . . C 3 24.303 -27.859 4.861 1 21.2 ? C3N NAP 402 A 1 HETATM 39 C C7N NAP . . . C 3 23.22 -28.541 5.672 1 19.3 ? C7N NAP 402 A 1 HETATM 40 O O7N NAP . . . C 3 22.263 -29.035 5.1 1 18.87 ? O7N NAP 402 A 1 HETATM 41 N N7N NAP . . . C 3 23.331 -28.605 6.994 1 16.13 ? N7N NAP 402 A 1 HETATM 42 C C4N NAP . . . C 3 25.476 -27.417 5.459 1 19.03 ? C4N NAP 402 A 1 HETATM 43 C C5N NAP . . . C 3 26.436 -26.793 4.672 1 22.99 ? C5N NAP 402 A 1 HETATM 44 C C6N NAP . . . C 3 26.2 -26.629 3.309 1 18.19 ? C6N NAP 402 A 1 HETATM 45 P P2B NAP . . . C 3 33.225 -18.866 -4.553 1 22.34 ? P2B NAP 402 A 1 HETATM 46 O O1X NAP . . . C 3 31.776 -19.014 -4.205 1 26.32 ? O1X NAP 402 A 1 HETATM 47 O O2X NAP . . . C 3 33.803 -17.536 -4.138 1 32.3 ? O2X NAP 402 A 1 HETATM 48 O O3X NAP . . . C 3 33.573 -19.307 -5.956 1 22.24 ? O3X NAP 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #