data_4I6F # _model_server_result.job_id fDhBNDjWaiiLO9h9N-E0zA _model_server_result.datetime_utc '2024-10-19 12:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4I6F # _exptl.entry_id 4I6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.492 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-8-cyclopentyl-7-ethyl-5-methyl-2-(2-phenyl-1H-imidazol-1-yl)-7,8-dihydropteridin-6(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.14 _cell.angle_gamma 90 _cell.entry_id 4I6F _cell.length_a 103.824 _cell.length_b 60.123 _cell.length_c 53.119 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 N6 O' _chem_comp.formula_weight 402.492 _chem_comp.id 1C7 _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-8-cyclopentyl-7-ethyl-5-methyl-2-(2-phenyl-1H-imidazol-1-yl)-7,8-dihydropteridin-6(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 1C7 sing 1 n n C16 C9 1C7 sing 2 n n C24 C23 1C7 doub 3 n y C24 N20 1C7 sing 4 n y C19 N7 1C7 sing 5 n n C1 N6 1C7 doub 6 n y C1 C2 1C7 sing 7 n y N6 C5 1C7 sing 8 n y C12 C13 1C7 sing 9 n n C12 C11 1C7 sing 10 n n N7 C2 1C7 sing 11 n n N7 C8 1C7 sing 12 n n C23 N22 1C7 sing 13 n y C2 C3 1C7 doub 14 n y O18 C8 1C7 doub 15 n n C8 C9 1C7 sing 16 n n C5 N20 1C7 sing 17 n n C5 N4 1C7 doub 18 n y N20 C21 1C7 sing 19 n y C3 N4 1C7 sing 20 n y C3 N10 1C7 sing 21 n n C9 N10 1C7 sing 22 n n N10 C11 1C7 sing 23 n n C13 C14 1C7 sing 24 n n N22 C21 1C7 doub 25 n y C11 C15 1C7 sing 26 n n C21 C25 1C7 sing 27 n n C15 C14 1C7 sing 28 n n C25 C30 1C7 doub 29 n y C25 C26 1C7 sing 30 n y C30 C29 1C7 sing 31 n y C26 C27 1C7 doub 32 n y C29 C28 1C7 doub 33 n y C27 C28 1C7 sing 34 n y C19 H1 1C7 sing 35 n n C19 H2 1C7 sing 36 n n C19 H3 1C7 sing 37 n n C9 H4 1C7 sing 38 n n C16 H5 1C7 sing 39 n n C16 H6 1C7 sing 40 n n C17 H7 1C7 sing 41 n n C17 H8 1C7 sing 42 n n C17 H9 1C7 sing 43 n n C11 H10 1C7 sing 44 n n C15 H11 1C7 sing 45 n n C15 H12 1C7 sing 46 n n C14 H13 1C7 sing 47 n n C14 H14 1C7 sing 48 n n C13 H15 1C7 sing 49 n n C13 H16 1C7 sing 50 n n C12 H17 1C7 sing 51 n n C12 H18 1C7 sing 52 n n C1 H19 1C7 sing 53 n n C24 H20 1C7 sing 54 n n C23 H21 1C7 sing 55 n n C30 H22 1C7 sing 56 n n C29 H23 1C7 sing 57 n n C28 H24 1C7 sing 58 n n C27 H25 1C7 sing 59 n n C26 H26 1C7 sing 60 n n # _atom_sites.entry_id 4I6F _atom_sites.fract_transf_matrix[1][1] 0.009632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00297 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1C7 A 1 401 1 1C7 LIG . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 14 HOH HOH . C 3 HOH A 9 509 15 HOH HOH . C 3 HOH A 10 510 16 HOH HOH . C 3 HOH A 11 511 21 HOH HOH . C 3 HOH A 12 512 26 HOH HOH . C 3 HOH A 13 513 28 HOH HOH . C 3 HOH A 14 514 30 HOH HOH . C 3 HOH A 15 515 32 HOH HOH . C 3 HOH A 16 516 35 HOH HOH . C 3 HOH A 17 517 36 HOH HOH . C 3 HOH A 18 518 45 HOH HOH . C 3 HOH A 19 519 47 HOH HOH . C 3 HOH A 20 520 49 HOH HOH . C 3 HOH A 21 521 51 HOH HOH . C 3 HOH A 22 522 53 HOH HOH . C 3 HOH A 23 523 63 HOH HOH . C 3 HOH A 24 524 67 HOH HOH . C 3 HOH A 25 525 69 HOH HOH . C 3 HOH A 26 526 76 HOH HOH . C 3 HOH A 27 527 89 HOH HOH . C 3 HOH A 28 528 90 HOH HOH . C 3 HOH A 29 529 91 HOH HOH . C 3 HOH A 30 530 92 HOH HOH . C 3 HOH A 31 531 93 HOH HOH . C 3 HOH A 32 532 94 HOH HOH . C 3 HOH A 33 533 95 HOH HOH . C 3 HOH A 34 534 96 HOH HOH . C 3 HOH A 35 535 97 HOH HOH . C 3 HOH A 36 536 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O18 1C7 . . . B 2 13.442 4.086 10.07 1 14.53 ? O18 1C7 401 A 1 HETATM 2 C C8 1C7 . . . B 2 12.403 4.696 10.167 1 15.84 ? C8 1C7 401 A 1 HETATM 3 N N7 1C7 . . . B 2 11.211 4.042 9.96 1 15.77 ? N7 1C7 401 A 1 HETATM 4 C C19 1C7 . . . B 2 11.215 2.65 9.648 1 15.54 ? C19 1C7 401 A 1 HETATM 5 C C2 1C7 . . . B 2 10.019 4.721 10.03 1 13.98 ? C2 1C7 401 A 1 HETATM 6 C C9 1C7 . . . B 2 12.509 6.103 10.46 1 14.92 ? C9 1C7 401 A 1 HETATM 7 C C16 1C7 . . . B 2 13.224 6.594 9.231 1 13.68 ? C16 1C7 401 A 1 HETATM 8 C C17 1C7 . . . B 2 12.395 6.435 7.995 1 11.37 ? C17 1C7 401 A 1 HETATM 9 N N10 1C7 . . . B 2 11.247 6.793 10.556 1 14.61 ? N10 1C7 401 A 1 HETATM 10 C C11 1C7 . . . B 2 11.277 8.188 10.918 1 14.95 ? C11 1C7 401 A 1 HETATM 11 C C15 1C7 . . . B 2 12.466 8.467 11.758 1 12.43 ? C15 1C7 401 A 1 HETATM 12 C C14 1C7 . . . B 2 12.528 9.954 11.878 1 13.21 ? C14 1C7 401 A 1 HETATM 13 C C13 1C7 . . . B 2 11.73 10.484 10.741 1 14.26 ? C13 1C7 401 A 1 HETATM 14 C C12 1C7 . . . B 2 11.26 9.305 9.93 1 14.1 ? C12 1C7 401 A 1 HETATM 15 C C3 1C7 . . . B 2 10.036 6.121 10.355 1 14.47 ? C3 1C7 401 A 1 HETATM 16 N N4 1C7 . . . B 2 8.868 6.716 10.428 1 16.36 ? N4 1C7 401 A 1 HETATM 17 C C5 1C7 . . . B 2 7.774 6.044 10.196 1 15.51 ? C5 1C7 401 A 1 HETATM 18 N N6 1C7 . . . B 2 7.753 4.781 9.905 1 16.18 ? N6 1C7 401 A 1 HETATM 19 C C1 1C7 . . . B 2 8.85 4.109 9.815 1 14.04 ? C1 1C7 401 A 1 HETATM 20 N N20 1C7 . . . B 2 6.673 6.705 10.287 1 15.31 ? N20 1C7 401 A 1 HETATM 21 C C24 1C7 . . . B 2 5.637 6.439 9.603 1 17.87 ? C24 1C7 401 A 1 HETATM 22 C C23 1C7 . . . B 2 4.732 7.35 9.978 1 16.52 ? C23 1C7 401 A 1 HETATM 23 N N22 1C7 . . . B 2 5.319 8.071 10.889 1 20.48 ? N22 1C7 401 A 1 HETATM 24 C C21 1C7 . . . B 2 6.571 7.705 11.06 1 17.75 ? C21 1C7 401 A 1 HETATM 25 C C25 1C7 . . . B 2 7.509 8.266 12.049 1 16.25 ? C25 1C7 401 A 1 HETATM 26 C C30 1C7 . . . B 2 7.601 9.586 12.294 1 15.82 ? C30 1C7 401 A 1 HETATM 27 C C29 1C7 . . . B 2 8.44 10.004 13.266 1 17.71 ? C29 1C7 401 A 1 HETATM 28 C C28 1C7 . . . B 2 9.18 9.15 14.009 1 16.8 ? C28 1C7 401 A 1 HETATM 29 C C27 1C7 . . . B 2 9.071 7.835 13.795 1 17.62 ? C27 1C7 401 A 1 HETATM 30 C C26 1C7 . . . B 2 8.214 7.411 12.824 1 18.41 ? C26 1C7 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #