data_4I7C # _model_server_result.job_id V9d6ktjvsJh2bk4L3YcamQ _model_server_result.datetime_utc '2025-07-03 23:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 4I7C # _exptl.entry_id 4I7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I7C _cell.length_a 164.23 _cell.length_b 164.23 _cell.length_c 164.23 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 70 A CYS 156 1_555 B CZ 23P 7 B 23P 118 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.758 ? covale ? covale2 A SG CYS 70 A CYS 156 1_555 B CZ 23P 7 B 23P 118 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.761 ? covale ? covale3 B C VAL 6 B VAL 117 1_555 B N 23P 7 B 23P 118 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C VAL 6 B VAL 117 1_555 B N 23P 7 B 23P 118 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C 23P 7 B 23P 118 1_555 B N MET 8 B MET 119 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C 23P 7 B 23P 118 1_555 B N MET 8 B MET 119 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 C SG CYS 70 C CYS 156 1_555 D CZ 23P 7 D 23P 118 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.753 ? covale ? covale8 C SG CYS 70 C CYS 156 1_555 D CZ 23P 7 D 23P 118 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.75 ? covale ? covale9 D C VAL 6 D VAL 117 1_555 D N 23P 7 D 23P 118 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale10 D C VAL 6 D VAL 117 1_555 D N 23P 7 D 23P 118 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale11 D C 23P 7 D 23P 118 1_555 D N MET 8 D MET 119 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 D C 23P 7 D 23P 118 1_555 D N MET 8 D MET 119 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A SG CYS 12 A CYS 98 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A SG CYS 19 A CYS 105 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A NE2 HIS 31 A HIS 117 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A SG CYS 35 A CYS 121 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 A SG CYS 42 A CYS 128 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 A SG CYS 49 A CYS 135 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 A NE2 HIS 61 A HIS 147 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 A NE2 HIS 66 A HIS 152 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc9 C SG CYS 12 C CYS 98 1_555 I ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 C SG CYS 19 C CYS 105 1_555 I ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 C NE2 HIS 31 C HIS 117 1_555 I ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc12 C SG CYS 35 C CYS 121 1_555 I ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C SG CYS 42 C CYS 128 1_555 H ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc14 C SG CYS 49 C CYS 135 1_555 H ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc15 C NE2 HIS 61 C HIS 147 1_555 H ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc16 C NE2 HIS 66 C HIS 152 1_555 H ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 265 n n C1 H11 MPD sing 266 n n C1 H12 MPD sing 267 n n C1 H13 MPD sing 268 n n C2 O2 MPD sing 269 n n C2 CM MPD sing 270 n n C2 C3 MPD sing 271 n n O2 HO2 MPD sing 272 n n CM HM1 MPD sing 273 n n CM HM2 MPD sing 274 n n CM HM3 MPD sing 275 n n C3 C4 MPD sing 276 n n C3 H31 MPD sing 277 n n C3 H32 MPD sing 278 n n C4 O4 MPD sing 279 n n C4 C5 MPD sing 280 n n C4 H4 MPD sing 281 n n O4 HO4 MPD sing 282 n n C5 H51 MPD sing 283 n n C5 H52 MPD sing 284 n n C5 H53 MPD sing 285 n n # _atom_sites.entry_id 4I7C _atom_sites.fract_transf_matrix[1][1] 0.006089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 601 601 ZN ZN . F 3 ZN A 1 602 603 ZN ZN . G 4 MPD A 1 603 1 MPD MPD . H 3 ZN C 1 601 601 ZN ZN . I 3 ZN C 1 602 603 ZN ZN . J 4 MPD C 1 603 1 MPD MPD . K 5 HOH A 1 701 1 HOH HOH . K 5 HOH A 2 702 2 HOH HOH . K 5 HOH A 3 703 3 HOH HOH . K 5 HOH A 4 704 7 HOH HOH . L 5 HOH B 1 201 5 HOH HOH . M 5 HOH C 1 701 4 HOH HOH . M 5 HOH C 2 702 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 4 -52.96 78.177 -19.341 1 56.59 ? C1 MPD 603 A 1 HETATM 2 C C2 MPD . . . G 4 -53.538 77.437 -18.115 1 107.97 ? C2 MPD 603 A 1 HETATM 3 O O2 MPD . . . G 4 -52.444 77.084 -17.227 1 60.65 ? O2 MPD 603 A 1 HETATM 4 C CM MPD . . . G 4 -54.508 78.357 -17.346 1 53.17 ? CM MPD 603 A 1 HETATM 5 C C3 MPD . . . G 4 -54.242 76.119 -18.547 1 54.97 ? C3 MPD 603 A 1 HETATM 6 C C4 MPD . . . G 4 -53.211 75.057 -18.996 1 61.98 ? C4 MPD 603 A 1 HETATM 7 O O4 MPD . . . G 4 -52.402 74.628 -17.866 1 64.81 ? O4 MPD 603 A 1 HETATM 8 C C5 MPD . . . G 4 -53.881 73.833 -19.635 1 62.43 ? C5 MPD 603 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #