data_4I7Z # _model_server_result.job_id seYduJWGkBwcfllUQnFpvg _model_server_result.datetime_utc '2024-11-26 02:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":101}' # _entry.id 4I7Z # _exptl.entry_id 4I7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I7Z _cell.length_a 159.451 _cell.length_b 159.451 _cell.length_c 362.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 # _struct_asym.details ? _struct_asym.entity_id 17 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 705 n n C1 H11 OCT sing 706 n n C1 H12 OCT sing 707 n n C1 H13 OCT sing 708 n n C2 C3 OCT sing 709 n n C2 H21 OCT sing 710 n n C2 H22 OCT sing 711 n n C3 C4 OCT sing 712 n n C3 H31 OCT sing 713 n n C3 H32 OCT sing 714 n n C4 C5 OCT sing 715 n n C4 H41 OCT sing 716 n n C4 H42 OCT sing 717 n n C5 C6 OCT sing 718 n n C5 H51 OCT sing 719 n n C5 H52 OCT sing 720 n n C6 C7 OCT sing 721 n n C6 H61 OCT sing 722 n n C6 H62 OCT sing 723 n n C7 C8 OCT sing 724 n n C7 H71 OCT sing 725 n n C7 H72 OCT sing 726 n n C8 H81 OCT sing 727 n n C8 H82 OCT sing 728 n n C8 H83 OCT sing 729 n n # _atom_sites.entry_id 4I7Z _atom_sites.fract_transf_matrix[1][1] 0.006272 _atom_sites.fract_transf_matrix[1][2] 0.003621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 MYS A 1 304 306 MYS MYS . M 11 8K6 A 1 305 308 8K6 8K6 . N 12 UMQ A 1 306 1102 UMQ UMQ . O 12 UMQ A 1 307 1103 UMQ UMQ . P 12 UMQ A 1 308 1104 UMQ UMQ . Q 13 CD A 1 309 1 CD CD . R 14 CLA B 1 201 201 CLA CLA . S 13 CD B 1 202 2 CD CD . T 15 OZ2 B 1 203 3 OZ2 OZ2 . U 9 HEM C 1 301 301 HEM HEM . V 13 CD C 1 302 3 CD CD . W 15 OZ2 C 1 303 1 OZ2 OZ2 . X 16 1E2 D 1 201 201 1E2 1E2 . Y 17 OCT F 1 101 102 OCT OCT . Z 18 BCR G 1 101 101 BCR BCR . AA 15 OZ2 G 1 102 2 OZ2 OZ2 . BA 19 HOH A 1 401 3 HOH HOH . BA 19 HOH A 2 402 4 HOH HOH . BA 19 HOH A 3 403 6 HOH HOH . BA 19 HOH A 4 404 8 HOH HOH . BA 19 HOH A 5 405 10 HOH HOH . BA 19 HOH A 6 406 11 HOH HOH . BA 19 HOH A 7 407 12 HOH HOH . BA 19 HOH A 8 408 13 HOH HOH . CA 19 HOH B 1 301 1 HOH HOH . CA 19 HOH B 2 302 2 HOH HOH . CA 19 HOH B 3 303 5 HOH HOH . CA 19 HOH B 4 304 9 HOH HOH . DA 19 HOH C 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . Y 17 -30.308 86.742 -9.65 1 112.84 ? C1 OCT 101 F 1 HETATM 2 C C2 OCT . . . Y 17 -31.347 87.393 -8.796 1 111.11 ? C2 OCT 101 F 1 HETATM 3 C C3 OCT . . . Y 17 -32.671 87.465 -9.488 1 109.3 ? C3 OCT 101 F 1 HETATM 4 C C4 OCT . . . Y 17 -33.252 86.107 -9.707 1 107.01 ? C4 OCT 101 F 1 HETATM 5 C C5 OCT . . . Y 17 -34.669 86.232 -10.167 1 104.92 ? C5 OCT 101 F 1 HETATM 6 C C6 OCT . . . Y 17 -35.204 84.882 -10.51 1 103.05 ? C6 OCT 101 F 1 HETATM 7 C C7 OCT . . . Y 17 -36.569 85.001 -11.101 1 102.61 ? C7 OCT 101 F 1 HETATM 8 C C8 OCT . . . Y 17 -36.881 83.775 -11.893 1 102.52 ? C8 OCT 101 F 1 HETATM 9 H H11 OCT . . . Y 17 -30.587 85.839 -9.868 1 135.41 ? H11 OCT 101 F 1 HETATM 10 H H12 OCT . . . Y 17 -29.466 86.714 -9.169 1 135.41 ? H12 OCT 101 F 1 HETATM 11 H H13 OCT . . . Y 17 -30.196 87.252 -10.468 1 135.41 ? H13 OCT 101 F 1 HETATM 12 H H21 OCT . . . Y 17 -31.444 86.891 -7.971 1 133.33 ? H21 OCT 101 F 1 HETATM 13 H H22 OCT . . . Y 17 -31.053 88.294 -8.589 1 133.33 ? H22 OCT 101 F 1 HETATM 14 H H31 OCT . . . Y 17 -33.287 87.988 -8.951 1 131.16 ? H31 OCT 101 F 1 HETATM 15 H H32 OCT . . . Y 17 -32.562 87.905 -10.346 1 131.16 ? H32 OCT 101 F 1 HETATM 16 H H41 OCT . . . Y 17 -32.733 85.639 -10.379 1 128.41 ? H41 OCT 101 F 1 HETATM 17 H H42 OCT . . . Y 17 -33.228 85.608 -8.875 1 128.41 ? H42 OCT 101 F 1 HETATM 18 H H51 OCT . . . Y 17 -35.207 86.625 -9.461 1 125.9 ? H51 OCT 101 F 1 HETATM 19 H H52 OCT . . . Y 17 -34.702 86.8 -10.952 1 125.9 ? H52 OCT 101 F 1 HETATM 20 H H61 OCT . . . Y 17 -34.616 84.449 -11.149 1 123.66 ? H61 OCT 101 F 1 HETATM 21 H H62 OCT . . . Y 17 -35.249 84.338 -9.708 1 123.66 ? H62 OCT 101 F 1 HETATM 22 H H71 OCT . . . Y 17 -36.599 85.773 -11.687 1 123.13 ? H71 OCT 101 F 1 HETATM 23 H H72 OCT . . . Y 17 -37.222 85.107 -10.392 1 123.13 ? H72 OCT 101 F 1 HETATM 24 H H81 OCT . . . Y 17 -36.847 82.998 -11.313 1 123.03 ? H81 OCT 101 F 1 HETATM 25 H H82 OCT . . . Y 17 -37.768 83.854 -12.276 1 123.03 ? H82 OCT 101 F 1 HETATM 26 H H83 OCT . . . Y 17 -36.229 83.676 -12.605 1 123.03 ? H83 OCT 101 F 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 182 _model_server_stats.query_time_ms 459 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #