data_4I7Z # _model_server_result.job_id M1bbNxQ8ns2y6l76cOFkFA _model_server_result.datetime_utc '2024-11-26 01:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":102}' # _entry.id 4I7Z # _exptl.entry_id 4I7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 704.912 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(R)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-[(6Z)-tridec-6-enoyloxy]propyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I7Z _cell.length_a 159.451 _cell.length_b 159.451 _cell.length_c 362.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 T N N ? 15 W N N ? 15 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C37 H69 O10 P' _chem_comp.formula_weight 704.912 _chem_comp.id OZ2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(R)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-[(6Z)-tridec-6-enoyloxy]propyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP1 P OZ2 doub 730 n n P OP3 OZ2 sing 731 n n P OP2 OZ2 sing 732 n n P O3G OZ2 sing 733 n n O1G C1 OZ2 sing 734 n n C2 C1 OZ2 sing 735 n n C1 O1 OZ2 doub 736 n n C3 C2 OZ2 sing 737 n n C2 H2 OZ2 sing 738 n n C2 H2A OZ2 sing 739 n n C3 C4 OZ2 sing 740 n n C3 H3 OZ2 sing 741 n n C3 H3A OZ2 sing 742 n n C5 C4 OZ2 sing 743 n n C4 H4 OZ2 sing 744 n n C4 H4A OZ2 sing 745 n n C5 C6 OZ2 sing 746 n n C5 H5 OZ2 sing 747 n n C5 H5A OZ2 sing 748 n n C7 C6 OZ2 sing 749 n n C6 H6 OZ2 sing 750 n n C6 H6A OZ2 sing 751 n n C7 C8 OZ2 sing 752 n n C7 H7 OZ2 sing 753 n n C7 H7A OZ2 sing 754 n n C9 C8 OZ2 sing 755 n n C8 H8 OZ2 sing 756 z n C8 H8A OZ2 sing 757 n n C9 C10 OZ2 doub 758 n n C9 H9 OZ2 sing 759 n n C10 C11 OZ2 sing 760 n n C10 H10 OZ2 sing 761 n n C11 C12 OZ2 sing 762 n n C11 H11 OZ2 sing 763 n n C11 H11A OZ2 sing 764 n n C13 C12 OZ2 sing 765 n n C12 H12 OZ2 sing 766 n n C12 H12A OZ2 sing 767 n n C13 C14 OZ2 sing 768 n n C13 H13 OZ2 sing 769 n n C13 H13A OZ2 sing 770 n n C15 C14 OZ2 sing 771 n n C14 H14 OZ2 sing 772 n n C14 H14A OZ2 sing 773 n n C15 C16 OZ2 sing 774 n n C15 H15 OZ2 sing 775 n n C15 H15A OZ2 sing 776 n n C16 C17 OZ2 sing 777 n n C16 H16 OZ2 sing 778 n n C16 H16A OZ2 sing 779 n n C17 C18 OZ2 sing 780 n n C17 H17 OZ2 sing 781 n n C17 H17A OZ2 sing 782 n n C18 H18 OZ2 sing 783 n n C18 H18A OZ2 sing 784 n n C18 H18B OZ2 sing 785 n n O2G C1B OZ2 sing 786 n n C1B O1B OZ2 doub 787 n n C1B C2B OZ2 sing 788 n n O1G C1G OZ2 sing 789 n n C1G C2G OZ2 sing 790 n n C1G H1G OZ2 sing 791 n n C1G H1GA OZ2 sing 792 n n C3B C2B OZ2 sing 793 n n C2B H2B OZ2 sing 794 n n C2B H2BA OZ2 sing 795 n n C2G C3G OZ2 sing 796 n n C2G O2G OZ2 sing 797 n n C2G H2G OZ2 sing 798 n n C3B C4B OZ2 sing 799 n n C3B H3B OZ2 sing 800 n n C3B H3BA OZ2 sing 801 n n O3G C3G OZ2 sing 802 n n C3G H3G OZ2 sing 803 n n C3G H3GA OZ2 sing 804 n n C5B C4B OZ2 sing 805 n n C4B H4B OZ2 sing 806 n n C4B H4BA OZ2 sing 807 n n C5B C6B OZ2 sing 808 n n C5B H5B OZ2 sing 809 n n C5B H5BA OZ2 sing 810 z n C6B C7B OZ2 doub 811 n n C6B H6B OZ2 sing 812 n n C8B C7B OZ2 sing 813 n n C7B H7B OZ2 sing 814 n n C8B C9B OZ2 sing 815 n n C8B H8B OZ2 sing 816 n n C8B H8BA OZ2 sing 817 n n C9B CB0 OZ2 sing 818 n n C9B H9B OZ2 sing 819 n n C9B H9BA OZ2 sing 820 n n CB0 CB1 OZ2 sing 821 n n CB0 HB0 OZ2 sing 822 n n CB0 HB0A OZ2 sing 823 n n CB1 CB2 OZ2 sing 824 n n CB1 HB1 OZ2 sing 825 n n CB1 HB1A OZ2 sing 826 n n CB2 CB3 OZ2 sing 827 n n CB2 HB2 OZ2 sing 828 n n CB2 HB2A OZ2 sing 829 n n CB3 HB3 OZ2 sing 830 n n CB3 HB3A OZ2 sing 831 n n CB3 HB3B OZ2 sing 832 n n CG2 CG1 OZ2 sing 833 n n CG1 OP3 OZ2 sing 834 n n CG1 HG1 OZ2 sing 835 n n CG1 HG1A OZ2 sing 836 n n CG3 CG2 OZ2 sing 837 n n OG2 CG2 OZ2 sing 838 n n CG2 HG2 OZ2 sing 839 n n OG2 HOG2 OZ2 sing 840 n n CG3 OG3 OZ2 sing 841 n n CG3 HG3 OZ2 sing 842 n n CG3 HG3A OZ2 sing 843 n n OG3 HOG3 OZ2 sing 844 n n OP2 HOP2 OZ2 sing 845 n n # _atom_sites.entry_id 4I7Z _atom_sites.fract_transf_matrix[1][1] 0.006272 _atom_sites.fract_transf_matrix[1][2] 0.003621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 MYS A 1 304 306 MYS MYS . M 11 8K6 A 1 305 308 8K6 8K6 . N 12 UMQ A 1 306 1102 UMQ UMQ . O 12 UMQ A 1 307 1103 UMQ UMQ . P 12 UMQ A 1 308 1104 UMQ UMQ . Q 13 CD A 1 309 1 CD CD . R 14 CLA B 1 201 201 CLA CLA . S 13 CD B 1 202 2 CD CD . T 15 OZ2 B 1 203 3 OZ2 OZ2 . U 9 HEM C 1 301 301 HEM HEM . V 13 CD C 1 302 3 CD CD . W 15 OZ2 C 1 303 1 OZ2 OZ2 . X 16 1E2 D 1 201 201 1E2 1E2 . Y 17 OCT F 1 101 102 OCT OCT . Z 18 BCR G 1 101 101 BCR BCR . AA 15 OZ2 G 1 102 2 OZ2 OZ2 . BA 19 HOH A 1 401 3 HOH HOH . BA 19 HOH A 2 402 4 HOH HOH . BA 19 HOH A 3 403 6 HOH HOH . BA 19 HOH A 4 404 8 HOH HOH . BA 19 HOH A 5 405 10 HOH HOH . BA 19 HOH A 6 406 11 HOH HOH . BA 19 HOH A 7 407 12 HOH HOH . BA 19 HOH A 8 408 13 HOH HOH . CA 19 HOH B 1 301 1 HOH HOH . CA 19 HOH B 2 302 2 HOH HOH . CA 19 HOH B 3 303 5 HOH HOH . CA 19 HOH B 4 304 9 HOH HOH . DA 19 HOH C 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P OZ2 . . . AA 15 -61.072 74.54 -6.541 1 168.11 ? P OZ2 102 G 1 HETATM 2 C C1 OZ2 . . . AA 15 -55.649 75.133 -4.453 1 119.86 ? C1 OZ2 102 G 1 HETATM 3 O O1 OZ2 . . . AA 15 -56.177 74.349 -3.669 1 120.66 ? O1 OZ2 102 G 1 HETATM 4 C C2 OZ2 . . . AA 15 -54.169 74.965 -4.825 1 113.88 ? C2 OZ2 102 G 1 HETATM 5 C C3 OZ2 . . . AA 15 -53.162 74.621 -3.732 1 106.1 ? C3 OZ2 102 G 1 HETATM 6 C C4 OZ2 . . . AA 15 -52.252 75.724 -3.241 1 99.55 ? C4 OZ2 102 G 1 HETATM 7 C C5 OZ2 . . . AA 15 -51.099 75.356 -2.349 1 91.32 ? C5 OZ2 102 G 1 HETATM 8 C C6 OZ2 . . . AA 15 -49.775 75.951 -2.682 1 85.47 ? C6 OZ2 102 G 1 HETATM 9 C C7 OZ2 . . . AA 15 -48.67 75.904 -1.673 1 78.77 ? C7 OZ2 102 G 1 HETATM 10 C C8 OZ2 . . . AA 15 -47.832 77.161 -1.584 1 74.42 ? C8 OZ2 102 G 1 HETATM 11 C C9 OZ2 . . . AA 15 -46.601 77.181 -0.702 1 70.59 ? C9 OZ2 102 G 1 HETATM 12 C C10 OZ2 . . . AA 15 -46.763 77.258 0.812 1 66.49 ? C10 OZ2 102 G 1 HETATM 13 C C11 OZ2 . . . AA 15 -45.478 77.155 1.622 1 64.54 ? C11 OZ2 102 G 1 HETATM 14 C C12 OZ2 . . . AA 15 -45.53 76.589 3.012 1 63.14 ? C12 OZ2 102 G 1 HETATM 15 C C13 OZ2 . . . AA 15 -44.499 77.069 3.993 1 62.16 ? C13 OZ2 102 G 1 HETATM 16 C C14 OZ2 . . . AA 15 -44.254 76.235 5.209 1 61.13 ? C14 OZ2 102 G 1 HETATM 17 C C15 OZ2 . . . AA 15 -43.075 76.56 6.079 1 60.26 ? C15 OZ2 102 G 1 HETATM 18 C C16 OZ2 . . . AA 15 -42.858 75.731 7.311 1 58.12 ? C16 OZ2 102 G 1 HETATM 19 C C1B OZ2 . . . AA 15 -56.749 78.799 -6.557 1 104.68 ? C1B OZ2 102 G 1 HETATM 20 O O1B OZ2 . . . AA 15 -56.857 79.414 -5.519 1 103.63 ? O1B OZ2 102 G 1 HETATM 21 C C1G OZ2 . . . AA 15 -57.795 76.207 -5.002 1 121.31 ? C1G OZ2 102 G 1 HETATM 22 O O1G OZ2 . . . AA 15 -56.45 75.903 -5.305 1 122.86 ? O1G OZ2 102 G 1 HETATM 23 C C2B OZ2 . . . AA 15 -55.916 79.375 -7.683 1 99.08 ? C2B OZ2 102 G 1 HETATM 24 C C2G OZ2 . . . AA 15 -58.467 77.258 -5.849 1 121.27 ? C2G OZ2 102 G 1 HETATM 25 O O2G OZ2 . . . AA 15 -57.583 77.721 -6.814 1 113.69 ? O2G OZ2 102 G 1 HETATM 26 C C3B OZ2 . . . AA 15 -54.708 80.208 -7.331 1 93.46 ? C3B OZ2 102 G 1 HETATM 27 C C3G OZ2 . . . AA 15 -59.644 76.66 -6.514 1 128.09 ? C3G OZ2 102 G 1 HETATM 28 O O3G OZ2 . . . AA 15 -60.361 75.711 -5.794 1 130.67 ? O3G OZ2 102 G 1 HETATM 29 C C4B OZ2 . . . AA 15 -53.475 80.062 -8.222 1 91.78 ? C4B OZ2 102 G 1 HETATM 30 C C5B OZ2 . . . AA 15 -52.41 81.125 -8.125 1 92.7 ? C5B OZ2 102 G 1 HETATM 31 C C6B OZ2 . . . AA 15 -51.401 81.247 -9.265 1 93.98 ? C6B OZ2 102 G 1 HETATM 32 C C7B OZ2 . . . AA 15 -50.36 82.345 -9.174 1 94.64 ? C7B OZ2 102 G 1 HETATM 33 C C8B OZ2 . . . AA 15 -49.488 82.597 -10.372 1 97.4 ? C8B OZ2 102 G 1 HETATM 34 C C9B OZ2 . . . AA 15 -48.564 83.806 -10.337 1 99.43 ? C9B OZ2 102 G 1 HETATM 35 C CB0 OZ2 . . . AA 15 -48.056 84.34 -11.627 1 102.26 ? CB0 OZ2 102 G 1 HETATM 36 C CB1 OZ2 . . . AA 15 -47.289 85.626 -11.601 1 102.45 ? CB1 OZ2 102 G 1 HETATM 37 C CG1 OZ2 . . . AA 15 -59.636 72.386 -6.355 1 165.54 ? CG1 OZ2 102 G 1 HETATM 38 C CG2 OZ2 . . . AA 15 -60.292 71.082 -6.708 1 163.91 ? CG2 OZ2 102 G 1 HETATM 39 O OG2 OZ2 . . . AA 15 -60.201 70.864 -8.071 1 165.22 ? OG2 OZ2 102 G 1 HETATM 40 C CG3 OZ2 . . . AA 15 -59.62 69.962 -5.986 1 160.42 ? CG3 OZ2 102 G 1 HETATM 41 O OG3 OZ2 . . . AA 15 -59.809 68.691 -6.472 1 159.21 ? OG3 OZ2 102 G 1 HETATM 42 O OP1 OZ2 . . . AA 15 -62.008 73.841 -5.585 1 166.23 ? OP1 OZ2 102 G 1 HETATM 43 O OP2 OZ2 . . . AA 15 -61.867 75.088 -7.696 1 169.52 ? OP2 OZ2 102 G 1 HETATM 44 O OP3 OZ2 . . . AA 15 -59.991 73.529 -7.084 1 168.01 ? OP3 OZ2 102 G 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #