data_4I7Z # _model_server_result.job_id Y8h5rdW4VvM5kqDoVQgouA _model_server_result.datetime_utc '2024-11-22 17:11:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":201}' # _entry.id 4I7Z # _exptl.entry_id 4I7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.335 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(acetyloxy)-2-hydroxypropyl 6-deoxy-6-sulfo-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I7Z _cell.length_a 159.451 _cell.length_b 159.451 _cell.length_c 362.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C11 H20 O11 S' _chem_comp.formula_weight 360.335 _chem_comp.id 1E2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(acetyloxy)-2-hydroxypropyl 6-deoxy-6-sulfo-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 S 1E2 doub 1 n n C6 S 1E2 sing 2 n n C6 C5 1E2 sing 3 n n O9 S 1E2 doub 4 n n S O8 1E2 sing 5 n n O4 C4 1E2 sing 6 n n C4 C5 1E2 sing 7 n n C4 C3 1E2 sing 8 n n C5 O5 1E2 sing 9 n n O5 C1 1E2 sing 10 n n O3 C3 1E2 sing 11 n n C3 C2 1E2 sing 12 n n C1 C2 1E2 sing 13 n n C1 O6 1E2 sing 14 n n C2 O2 1E2 sing 15 n n O6 C44 1E2 sing 16 n n C24 C23 1E2 sing 17 n n C44 C45 1E2 sing 18 n n C23 O10 1E2 doub 19 n n C23 O48 1E2 sing 20 n n O47 C45 1E2 sing 21 n n C45 C46 1E2 sing 22 n n O48 C46 1E2 sing 23 n n C2 H1 1E2 sing 24 n n C4 H2 1E2 sing 25 n n C6 H3 1E2 sing 26 n n C6 H4 1E2 sing 27 n n C5 H5 1E2 sing 28 n n C24 H6 1E2 sing 29 n n C24 H7 1E2 sing 30 n n C24 H8 1E2 sing 31 n n C46 H9 1E2 sing 32 n n C46 H10 1E2 sing 33 n n C45 H11 1E2 sing 34 n n O47 H12 1E2 sing 35 n n C44 H13 1E2 sing 36 n n C44 H14 1E2 sing 37 n n C1 H15 1E2 sing 38 n n O2 H16 1E2 sing 39 n n C3 H17 1E2 sing 40 n n O3 H18 1E2 sing 41 n n O4 H19 1E2 sing 42 n n O8 H20 1E2 sing 43 n n # _atom_sites.entry_id 4I7Z _atom_sites.fract_transf_matrix[1][1] 0.006272 _atom_sites.fract_transf_matrix[1][2] 0.003621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 MYS A 1 304 306 MYS MYS . M 11 8K6 A 1 305 308 8K6 8K6 . N 12 UMQ A 1 306 1102 UMQ UMQ . O 12 UMQ A 1 307 1103 UMQ UMQ . P 12 UMQ A 1 308 1104 UMQ UMQ . Q 13 CD A 1 309 1 CD CD . R 14 CLA B 1 201 201 CLA CLA . S 13 CD B 1 202 2 CD CD . T 15 OZ2 B 1 203 3 OZ2 OZ2 . U 9 HEM C 1 301 301 HEM HEM . V 13 CD C 1 302 3 CD CD . W 15 OZ2 C 1 303 1 OZ2 OZ2 . X 16 1E2 D 1 201 201 1E2 1E2 . Y 17 OCT F 1 101 102 OCT OCT . Z 18 BCR G 1 101 101 BCR BCR . AA 15 OZ2 G 1 102 2 OZ2 OZ2 . BA 19 HOH A 1 401 3 HOH HOH . BA 19 HOH A 2 402 4 HOH HOH . BA 19 HOH A 3 403 6 HOH HOH . BA 19 HOH A 4 404 8 HOH HOH . BA 19 HOH A 5 405 10 HOH HOH . BA 19 HOH A 6 406 11 HOH HOH . BA 19 HOH A 7 407 12 HOH HOH . BA 19 HOH A 8 408 13 HOH HOH . CA 19 HOH B 1 301 1 HOH HOH . CA 19 HOH B 2 302 2 HOH HOH . CA 19 HOH B 3 303 5 HOH HOH . CA 19 HOH B 4 304 9 HOH HOH . DA 19 HOH C 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1E2 . . . X 16 -31.124 97.784 20.35 1 106.88 ? C2 1E2 201 D 1 HETATM 2 C C4 1E2 . . . X 16 -30.128 98.566 18.206 1 110.72 ? C4 1E2 201 D 1 HETATM 3 C C6 1E2 . . . X 16 -31.126 100.961 18.42 1 110.18 ? C6 1E2 201 D 1 HETATM 4 C C5 1E2 . . . X 16 -31.35 99.492 18.045 1 109.94 ? C5 1E2 201 D 1 HETATM 5 O O10 1E2 . . . X 16 -38.34 99.794 22.891 1 118.71 ? O10 1E2 201 D 1 HETATM 6 C C23 1E2 . . . X 16 -37.517 99.54 22.038 1 119.77 ? C23 1E2 201 D 1 HETATM 7 C C24 1E2 . . . X 16 -37.848 98.525 20.948 1 117.7 ? C24 1E2 201 D 1 HETATM 8 O O48 1E2 . . . X 16 -36.182 100.005 22.173 1 122.31 ? O48 1E2 201 D 1 HETATM 9 C C46 1E2 . . . X 16 -35.546 99.594 23.402 1 123.15 ? C46 1E2 201 D 1 HETATM 10 C C45 1E2 . . . X 16 -34.341 98.647 23.097 1 134.95 ? C45 1E2 201 D 1 HETATM 11 O O47 1E2 . . . X 16 -34.714 97.565 22.627 1 133.02 ? O47 1E2 201 D 1 HETATM 12 C C44 1E2 . . . X 16 -33.364 99.396 22.121 1 111.86 ? C44 1E2 201 D 1 HETATM 13 O O6 1E2 . . . X 16 -33.273 98.658 20.9 1 111.12 ? O6 1E2 201 D 1 HETATM 14 C C1 1E2 . . . X 16 -32.081 98.902 20.155 1 109.39 ? C1 1E2 201 D 1 HETATM 15 O O2 1E2 . . . X 16 -30.848 97.574 21.708 1 104.87 ? O2 1E2 201 D 1 HETATM 16 C C3 1E2 . . . X 16 -29.852 98.157 19.645 1 110.08 ? C3 1E2 201 D 1 HETATM 17 O O3 1E2 . . . X 16 -29.004 97.03 19.662 1 110.18 ? O3 1E2 201 D 1 HETATM 18 O O4 1E2 . . . X 16 -28.995 99.214 17.718 1 112.51 ? O4 1E2 201 D 1 HETATM 19 O O5 1E2 . . . X 16 -32.372 98.905 18.808 1 109.59 ? O5 1E2 201 D 1 HETATM 20 S S 1E2 . . . X 16 -31.937 102.162 17.54 1 109.07 ? S 1E2 201 D 1 HETATM 21 O O9 1E2 . . . X 16 -33.283 101.742 17.813 1 108.4 ? O9 1E2 201 D 1 HETATM 22 O O7 1E2 . . . X 16 -32.012 102.003 16.103 1 108.94 ? O7 1E2 201 D 1 HETATM 23 O O8 1E2 . . . X 16 -32.054 103.479 18.166 1 111.7 ? O8 1E2 201 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #