data_4I7Z
#
_model_server_result.job_id            urBtHkgNFhqTN-0t871BLQ 
_model_server_result.datetime_utc      '2024-11-26 01:16:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i7z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":301}' 
#
_entry.id    4I7Z 
#
_exptl.entry_id    4I7Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4I7Z 
_cell.length_a            159.451 
_cell.length_b            159.451 
_cell.length_c            362.746 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I7Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 I N N 
? 9 J N N 
? 9 K N N 
? 9 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 469 n n 
CHA C4D HEM doub 470 n n 
CHA HHA HEM sing 471 n n 
CHB C4A HEM sing 472 n n 
CHB C1B HEM doub 473 n n 
CHB HHB HEM sing 474 n n 
CHC C4B HEM sing 475 n n 
CHC C1C HEM doub 476 n n 
CHC HHC HEM sing 477 n n 
CHD C4C HEM doub 478 n n 
CHD C1D HEM sing 479 n n 
CHD HHD HEM sing 480 n n 
C1A C2A HEM doub 481 n y 
C1A NA HEM sing 482 n y 
C2A C3A HEM sing 483 n y 
C2A CAA HEM sing 484 n n 
C3A C4A HEM doub 485 n y 
C3A CMA HEM sing 486 n n 
C4A NA HEM sing 487 n y 
CMA HMA HEM sing 488 n n 
CMA HMAA HEM sing 489 n n 
CMA HMAB HEM sing 490 n n 
CAA CBA HEM sing 491 n n 
CAA HAA HEM sing 492 n n 
CAA HAAA HEM sing 493 n n 
CBA CGA HEM sing 494 n n 
CBA HBA HEM sing 495 n n 
CBA HBAA HEM sing 496 n n 
CGA O1A HEM doub 497 n n 
CGA O2A HEM sing 498 n n 
C1B C2B HEM sing 499 n n 
C1B NB HEM sing 500 n n 
C2B C3B HEM doub 501 n n 
C2B CMB HEM sing 502 n n 
C3B C4B HEM sing 503 n n 
C3B CAB HEM sing 504 n n 
C4B NB HEM doub 505 n n 
CMB HMB HEM sing 506 n n 
CMB HMBA HEM sing 507 n n 
CMB HMBB HEM sing 508 n n 
CAB CBB HEM doub 509 n n 
CAB HAB HEM sing 510 n n 
CBB HBB HEM sing 511 n n 
CBB HBBA HEM sing 512 n n 
C1C C2C HEM sing 513 n y 
C1C NC HEM sing 514 n y 
C2C C3C HEM doub 515 n y 
C2C CMC HEM sing 516 n n 
C3C C4C HEM sing 517 n y 
C3C CAC HEM sing 518 n n 
C4C NC HEM sing 519 n y 
CMC HMC HEM sing 520 n n 
CMC HMCA HEM sing 521 n n 
CMC HMCB HEM sing 522 n n 
CAC CBC HEM doub 523 n n 
CAC HAC HEM sing 524 n n 
CBC HBC HEM sing 525 n n 
CBC HBCA HEM sing 526 n n 
C1D C2D HEM sing 527 n n 
C1D ND HEM doub 528 n n 
C2D C3D HEM doub 529 n n 
C2D CMD HEM sing 530 n n 
C3D C4D HEM sing 531 n n 
C3D CAD HEM sing 532 n n 
C4D ND HEM sing 533 n n 
CMD HMD HEM sing 534 n n 
CMD HMDA HEM sing 535 n n 
CMD HMDB HEM sing 536 n n 
CAD CBD HEM sing 537 n n 
CAD HAD HEM sing 538 n n 
CAD HADA HEM sing 539 n n 
CBD CGD HEM sing 540 n n 
CBD HBD HEM sing 541 n n 
CBD HBDA HEM sing 542 n n 
CGD O1D HEM doub 543 n n 
CGD O2D HEM sing 544 n n 
O2A H2A HEM sing 545 n n 
O2D H2D HEM sing 546 n n 
FE NA HEM sing 547 n n 
FE NB HEM sing 548 n n 
FE NC HEM sing 549 n n 
FE ND HEM sing 550 n n 
#
_atom_sites.entry_id                     4I7Z 
_atom_sites.fract_transf_matrix[1][1]    0.006272 
_atom_sites.fract_transf_matrix[1][2]    0.003621 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 HEM A 1 301 301 HEM HEM . 
J 9 HEM A 1 302 302 HEM HEM . 
K 9 HEM A 1 303 303 HEM HEM . 
L 10 MYS A 1 304 306 MYS MYS . 
M 11 8K6 A 1 305 308 8K6 8K6 . 
N 12 UMQ A 1 306 1102 UMQ UMQ . 
O 12 UMQ A 1 307 1103 UMQ UMQ . 
P 12 UMQ A 1 308 1104 UMQ UMQ . 
Q 13 CD A 1 309 1 CD CD . 
R 14 CLA B 1 201 201 CLA CLA . 
S 13 CD B 1 202 2 CD CD . 
T 15 OZ2 B 1 203 3 OZ2 OZ2 . 
U 9 HEM C 1 301 301 HEM HEM . 
V 13 CD C 1 302 3 CD CD . 
W 15 OZ2 C 1 303 1 OZ2 OZ2 . 
X 16 1E2 D 1 201 201 1E2 1E2 . 
Y 17 OCT F 1 101 102 OCT OCT . 
Z 18 BCR G 1 101 101 BCR BCR . 
AA 15 OZ2 G 1 102 2 OZ2 OZ2 . 
BA 19 HOH A 1 401 3 HOH HOH . 
BA 19 HOH A 2 402 4 HOH HOH . 
BA 19 HOH A 3 403 6 HOH HOH . 
BA 19 HOH A 4 404 8 HOH HOH . 
BA 19 HOH A 5 405 10 HOH HOH . 
BA 19 HOH A 6 406 11 HOH HOH . 
BA 19 HOH A 7 407 12 HOH HOH . 
BA 19 HOH A 8 408 13 HOH HOH . 
CA 19 HOH B 1 301 1 HOH HOH . 
CA 19 HOH B 2 302 2 HOH HOH . 
CA 19 HOH B 3 303 5 HOH HOH . 
CA 19 HOH B 4 304 9 HOH HOH . 
DA 19 HOH C 1 401 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . U 9 -76.355 44.573 -12.749 1 85.79 ? CHA HEM 301 C 1 
HETATM 2 C CHB HEM . . . U 9 -74.379 48.428 -10.558 1 79.24 ? CHB HEM 301 C 1 
HETATM 3 C CHC HEM . . . U 9 -74.55 46.099 -6.309 1 76.06 ? CHC HEM 301 C 1 
HETATM 4 C CHD HEM . . . U 9 -75.251 41.969 -8.782 1 80.87 ? CHD HEM 301 C 1 
HETATM 5 C C1A HEM . . . U 9 -75.866 45.838 -12.507 1 83.95 ? C1A HEM 301 C 1 
HETATM 6 C C2A HEM . . . U 9 -75.813 46.923 -13.463 1 84.11 ? C2A HEM 301 C 1 
HETATM 7 C C3A HEM . . . U 9 -75.27 47.985 -12.857 1 82.72 ? C3A HEM 301 C 1 
HETATM 8 C C4A HEM . . . U 9 -74.956 47.608 -11.498 1 81.4 ? C4A HEM 301 C 1 
HETATM 9 C CMA HEM . . . U 9 -75.006 49.378 -13.469 1 81.99 ? CMA HEM 301 C 1 
HETATM 10 C CAA HEM . . . U 9 -76.311 46.834 -14.92 1 81.17 ? CAA HEM 301 C 1 
HETATM 11 C CBA HEM . . . U 9 -75.119 46.862 -15.867 1 89.87 ? CBA HEM 301 C 1 
HETATM 12 C CGA HEM . . . U 9 -75.55 46.485 -17.26 1 95.48 ? CGA HEM 301 C 1 
HETATM 13 O O1A HEM . . . U 9 -76.757 46.178 -17.471 1 96.31 ? O1A HEM 301 C 1 
HETATM 14 O O2A HEM . . . U 9 -74.67 46.493 -18.16 1 96.08 ? O2A HEM 301 C 1 
HETATM 15 C C1B HEM . . . U 9 -74.317 48.166 -9.211 1 78.05 ? C1B HEM 301 C 1 
HETATM 16 C C2B HEM . . . U 9 -74.001 49.123 -8.177 1 77.83 ? C2B HEM 301 C 1 
HETATM 17 C C3B HEM . . . U 9 -74.062 48.497 -7.005 1 77.62 ? C3B HEM 301 C 1 
HETATM 18 C C4B HEM . . . U 9 -74.404 47.104 -7.244 1 76.22 ? C4B HEM 301 C 1 
HETATM 19 C CMB HEM . . . U 9 -73.67 50.62 -8.373 1 76.41 ? CMB HEM 301 C 1 
HETATM 20 C CAB HEM . . . U 9 -73.785 49.187 -5.654 1 81.14 ? CAB HEM 301 C 1 
HETATM 21 C CBB HEM . . . U 9 -74.143 48.602 -4.512 1 83.28 ? CBB HEM 301 C 1 
HETATM 22 C C1C HEM . . . U 9 -74.861 44.785 -6.607 1 78.1 ? C1C HEM 301 C 1 
HETATM 23 C C2C HEM . . . U 9 -75.323 43.774 -5.675 1 80.24 ? C2C HEM 301 C 1 
HETATM 24 C C3C HEM . . . U 9 -75.521 42.637 -6.362 1 83.05 ? C3C HEM 301 C 1 
HETATM 25 C C4C HEM . . . U 9 -75.189 42.885 -7.751 1 80.98 ? C4C HEM 301 C 1 
HETATM 26 C CMC HEM . . . U 9 -75.544 44 -4.162 1 79.87 ? CMC HEM 301 C 1 
HETATM 27 C CAC HEM . . . U 9 -76.025 41.277 -5.827 1 86.51 ? CAC HEM 301 C 1 
HETATM 28 C CBC HEM . . . U 9 -76.282 41.059 -4.534 1 87.66 ? CBC HEM 301 C 1 
HETATM 29 C C1D HEM . . . U 9 -75.641 42.236 -10.077 1 83.41 ? C1D HEM 301 C 1 
HETATM 30 C C2D HEM . . . U 9 -76.021 41.266 -11.092 1 86.35 ? C2D HEM 301 C 1 
HETATM 31 C C3D HEM . . . U 9 -76.364 42.097 -12.332 1 88.2 ? C3D HEM 301 C 1 
HETATM 32 C C4D HEM . . . U 9 -76.163 43.474 -11.943 1 85.94 ? C4D HEM 301 C 1 
HETATM 33 C CMD HEM . . . U 9 -76.074 39.725 -10.974 1 86.34 ? CMD HEM 301 C 1 
HETATM 34 C CAD HEM . . . U 9 -76.839 41.575 -13.697 1 93.61 ? CAD HEM 301 C 1 
HETATM 35 C CBD HEM . . . U 9 -78.002 40.612 -13.481 1 98.12 ? CBD HEM 301 C 1 
HETATM 36 C CGD HEM . . . U 9 -78.616 40.326 -14.822 1 103.6 ? CGD HEM 301 C 1 
HETATM 37 O O1D HEM . . . U 9 -79.58 39.518 -14.9 1 107.72 ? O1D HEM 301 C 1 
HETATM 38 O O2D HEM . . . U 9 -78.128 40.919 -15.817 1 103.8 ? O2D HEM 301 C 1 
HETATM 39 N NA HEM . . . U 9 -75.333 46.29 -11.316 1 81.82 ? NA HEM 301 C 1 
HETATM 40 N NB HEM . . . U 9 -74.554 46.942 -8.609 1 77.41 ? NB HEM 301 C 1 
HETATM 41 N NC HEM . . . U 9 -74.793 44.204 -7.861 1 78.48 ? NC HEM 301 C 1 
HETATM 42 N ND HEM . . . U 9 -75.737 43.511 -10.621 1 83.51 ? ND HEM 301 C 1 
HETATM 43 FE FE HEM . . . U 9 -75.182 45.18 -9.595 1 79.78 ? FE HEM 301 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           43 
#