data_4I7Z # _model_server_result.job_id gnMTj2yQRXE47-s2dq1fPg _model_server_result.datetime_utc '2024-11-22 17:22:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":303}' # _entry.id 4I7Z # _exptl.entry_id 4I7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I7Z _cell.length_a 159.451 _cell.length_b 159.451 _cell.length_c 362.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 K N N ? 9 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 469 n n CHA C4D HEM doub 470 n n CHA HHA HEM sing 471 n n CHB C4A HEM sing 472 n n CHB C1B HEM doub 473 n n CHB HHB HEM sing 474 n n CHC C4B HEM sing 475 n n CHC C1C HEM doub 476 n n CHC HHC HEM sing 477 n n CHD C4C HEM doub 478 n n CHD C1D HEM sing 479 n n CHD HHD HEM sing 480 n n C1A C2A HEM doub 481 n y C1A NA HEM sing 482 n y C2A C3A HEM sing 483 n y C2A CAA HEM sing 484 n n C3A C4A HEM doub 485 n y C3A CMA HEM sing 486 n n C4A NA HEM sing 487 n y CMA HMA HEM sing 488 n n CMA HMAA HEM sing 489 n n CMA HMAB HEM sing 490 n n CAA CBA HEM sing 491 n n CAA HAA HEM sing 492 n n CAA HAAA HEM sing 493 n n CBA CGA HEM sing 494 n n CBA HBA HEM sing 495 n n CBA HBAA HEM sing 496 n n CGA O1A HEM doub 497 n n CGA O2A HEM sing 498 n n C1B C2B HEM sing 499 n n C1B NB HEM sing 500 n n C2B C3B HEM doub 501 n n C2B CMB HEM sing 502 n n C3B C4B HEM sing 503 n n C3B CAB HEM sing 504 n n C4B NB HEM doub 505 n n CMB HMB HEM sing 506 n n CMB HMBA HEM sing 507 n n CMB HMBB HEM sing 508 n n CAB CBB HEM doub 509 n n CAB HAB HEM sing 510 n n CBB HBB HEM sing 511 n n CBB HBBA HEM sing 512 n n C1C C2C HEM sing 513 n y C1C NC HEM sing 514 n y C2C C3C HEM doub 515 n y C2C CMC HEM sing 516 n n C3C C4C HEM sing 517 n y C3C CAC HEM sing 518 n n C4C NC HEM sing 519 n y CMC HMC HEM sing 520 n n CMC HMCA HEM sing 521 n n CMC HMCB HEM sing 522 n n CAC CBC HEM doub 523 n n CAC HAC HEM sing 524 n n CBC HBC HEM sing 525 n n CBC HBCA HEM sing 526 n n C1D C2D HEM sing 527 n n C1D ND HEM doub 528 n n C2D C3D HEM doub 529 n n C2D CMD HEM sing 530 n n C3D C4D HEM sing 531 n n C3D CAD HEM sing 532 n n C4D ND HEM sing 533 n n CMD HMD HEM sing 534 n n CMD HMDA HEM sing 535 n n CMD HMDB HEM sing 536 n n CAD CBD HEM sing 537 n n CAD HAD HEM sing 538 n n CAD HADA HEM sing 539 n n CBD CGD HEM sing 540 n n CBD HBD HEM sing 541 n n CBD HBDA HEM sing 542 n n CGD O1D HEM doub 543 n n CGD O2D HEM sing 544 n n O2A H2A HEM sing 545 n n O2D H2D HEM sing 546 n n FE NA HEM sing 547 n n FE NB HEM sing 548 n n FE NC HEM sing 549 n n FE ND HEM sing 550 n n # _atom_sites.entry_id 4I7Z _atom_sites.fract_transf_matrix[1][1] 0.006272 _atom_sites.fract_transf_matrix[1][2] 0.003621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 MYS A 1 304 306 MYS MYS . M 11 8K6 A 1 305 308 8K6 8K6 . N 12 UMQ A 1 306 1102 UMQ UMQ . O 12 UMQ A 1 307 1103 UMQ UMQ . P 12 UMQ A 1 308 1104 UMQ UMQ . Q 13 CD A 1 309 1 CD CD . R 14 CLA B 1 201 201 CLA CLA . S 13 CD B 1 202 2 CD CD . T 15 OZ2 B 1 203 3 OZ2 OZ2 . U 9 HEM C 1 301 301 HEM HEM . V 13 CD C 1 302 3 CD CD . W 15 OZ2 C 1 303 1 OZ2 OZ2 . X 16 1E2 D 1 201 201 1E2 1E2 . Y 17 OCT F 1 101 102 OCT OCT . Z 18 BCR G 1 101 101 BCR BCR . AA 15 OZ2 G 1 102 2 OZ2 OZ2 . BA 19 HOH A 1 401 3 HOH HOH . BA 19 HOH A 2 402 4 HOH HOH . BA 19 HOH A 3 403 6 HOH HOH . BA 19 HOH A 4 404 8 HOH HOH . BA 19 HOH A 5 405 10 HOH HOH . BA 19 HOH A 6 406 11 HOH HOH . BA 19 HOH A 7 407 12 HOH HOH . BA 19 HOH A 8 408 13 HOH HOH . CA 19 HOH B 1 301 1 HOH HOH . CA 19 HOH B 2 302 2 HOH HOH . CA 19 HOH B 3 303 5 HOH HOH . CA 19 HOH B 4 304 9 HOH HOH . DA 19 HOH C 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 9 -27.716 79.206 15.001 1 74.92 ? CHA HEM 303 A 1 HETATM 2 C CHB HEM . . . K 9 -28.586 81.157 10.633 1 80.55 ? CHB HEM 303 A 1 HETATM 3 C CHC HEM . . . K 9 -33.24 81.897 11.795 1 69.56 ? CHC HEM 303 A 1 HETATM 4 C CHD HEM . . . K 9 -32.446 79.925 16.146 1 64.15 ? CHD HEM 303 A 1 HETATM 5 C C1A HEM . . . K 9 -27.507 79.786 13.76 1 78.11 ? C1A HEM 303 A 1 HETATM 6 C C2A HEM . . . K 9 -26.235 80.12 13.137 1 81.78 ? C2A HEM 303 A 1 HETATM 7 C C3A HEM . . . K 9 -26.477 80.66 11.942 1 81.75 ? C3A HEM 303 A 1 HETATM 8 C C4A HEM . . . K 9 -27.91 80.684 11.74 1 80.22 ? C4A HEM 303 A 1 HETATM 9 C CMA HEM . . . K 9 -25.401 81.158 10.953 1 83.14 ? CMA HEM 303 A 1 HETATM 10 C CAA HEM . . . K 9 -24.819 79.926 13.725 1 84.03 ? CAA HEM 303 A 1 HETATM 11 C CBA HEM . . . K 9 -24.77 80.59 15.094 1 86.18 ? CBA HEM 303 A 1 HETATM 12 C CGA HEM . . . K 9 -23.363 80.983 15.459 1 88.43 ? CGA HEM 303 A 1 HETATM 13 O O1A HEM . . . K 9 -22.457 80.903 14.584 1 88.68 ? O1A HEM 303 A 1 HETATM 14 O O2A HEM . . . K 9 -23.16 81.386 16.637 1 88.69 ? O2A HEM 303 A 1 HETATM 15 C C1B HEM . . . K 9 -29.867 81.672 10.655 1 77.84 ? C1B HEM 303 A 1 HETATM 16 C C2B HEM . . . K 9 -30.369 82.758 9.836 1 77.61 ? C2B HEM 303 A 1 HETATM 17 C C3B HEM . . . K 9 -31.653 82.964 10.16 1 75.91 ? C3B HEM 303 A 1 HETATM 18 C C4B HEM . . . K 9 -32.005 82.012 11.193 1 73.67 ? C4B HEM 303 A 1 HETATM 19 C CMB HEM . . . K 9 -29.533 83.521 8.785 1 77.11 ? CMB HEM 303 A 1 HETATM 20 C CAB HEM . . . K 9 -32.633 84.018 9.583 1 74.17 ? CAB HEM 303 A 1 HETATM 21 C CBB HEM . . . K 9 -32.271 84.891 8.638 1 75.25 ? CBB HEM 303 A 1 HETATM 22 C C1C HEM . . . K 9 -33.442 81.446 13.078 1 65.55 ? C1C HEM 303 A 1 HETATM 23 C C2C HEM . . . K 9 -34.67 81.532 13.844 1 62.92 ? C2C HEM 303 A 1 HETATM 24 C C3C HEM . . . K 9 -34.442 80.982 15.042 1 59.19 ? C3C HEM 303 A 1 HETATM 25 C C4C HEM . . . K 9 -33.064 80.538 15.079 1 61.52 ? C4C HEM 303 A 1 HETATM 26 C CMC HEM . . . K 9 -35.995 82.147 13.338 1 60.96 ? CMC HEM 303 A 1 HETATM 27 C CAC HEM . . . K 9 -35.438 80.835 16.211 1 52.67 ? CAC HEM 303 A 1 HETATM 28 C CBC HEM . . . K 9 -36.662 81.354 16.145 1 50.72 ? CBC HEM 303 A 1 HETATM 29 C C1D HEM . . . K 9 -31.138 79.492 16.229 1 68.35 ? C1D HEM 303 A 1 HETATM 30 C C2D HEM . . . K 9 -30.612 78.704 17.317 1 70.67 ? C2D HEM 303 A 1 HETATM 31 C C3D HEM . . . K 9 -29.141 78.472 16.985 1 74 ? C3D HEM 303 A 1 HETATM 32 C C4D HEM . . . K 9 -28.909 79.139 15.709 1 72.87 ? C4D HEM 303 A 1 HETATM 33 C CMD HEM . . . K 9 -31.356 78.195 18.57 1 70.54 ? CMD HEM 303 A 1 HETATM 34 C CAD HEM . . . K 9 -28.192 77.661 17.893 1 80.22 ? CAD HEM 303 A 1 HETATM 35 C CBD HEM . . . K 9 -26.738 78.018 17.632 1 85.94 ? CBD HEM 303 A 1 HETATM 36 C CGD HEM . . . K 9 -26.388 79.318 18.304 1 87.14 ? CGD HEM 303 A 1 HETATM 37 O O1D HEM . . . K 9 -25.356 79.899 17.888 1 89.25 ? O1D HEM 303 A 1 HETATM 38 O O2D HEM . . . K 9 -27.12 79.761 19.232 1 84.02 ? O2D HEM 303 A 1 HETATM 39 N NA HEM . . . K 9 -28.501 80.143 12.868 1 78.94 ? NA HEM 303 A 1 HETATM 40 N NB HEM . . . K 9 -30.892 81.241 11.476 1 73.37 ? NB HEM 303 A 1 HETATM 41 N NC HEM . . . K 9 -32.482 80.836 13.864 1 64.18 ? NC HEM 303 A 1 HETATM 42 N ND HEM . . . K 9 -30.114 79.724 15.308 1 69.89 ? ND HEM 303 A 1 HETATM 43 FE FE HEM . . . K 9 -30.502 80.417 13.351 1 71.71 ? FE HEM 303 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #